Wall clock time and date at job start Mon Mar 30 2020 02:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47217 * 180.02562 * 10 9 7 12 12 C 1.47108 * 110.99872 * 293.11235 * 11 10 9 13 13 C 1.52917 * 108.46724 * 171.61598 * 12 11 10 14 14 C 1.51496 * 110.85823 * 58.62648 * 13 12 11 15 15 H 1.08998 * 109.08086 * 187.40510 * 14 13 12 16 16 N 1.47024 * 112.48125 * 67.21256 * 14 13 12 17 17 C 1.47759 * 107.96147 * 211.88605 * 16 14 13 18 18 C 1.54452 * 107.13093 * 1.26324 * 17 16 14 19 19 C 1.54133 * 112.25275 * 308.35431 * 14 13 12 20 20 H 1.09001 * 112.57193 * 282.44387 * 19 14 13 21 21 C 1.46538 * 110.99959 * 170.00049 * 11 10 9 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 24 24 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 25 25 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 26 26 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 27 27 H 1.08998 * 109.63526 * 291.30727 * 12 11 10 28 28 H 1.08998 * 109.63529 * 51.92123 * 12 11 10 29 29 H 1.09000 * 109.20295 * 298.26921 * 13 12 11 30 30 H 1.09006 * 109.16270 * 178.95151 * 13 12 11 31 31 H 1.00904 * 111.00360 * 333.75419 * 16 14 13 32 32 H 1.08996 * 109.90926 * 120.63963 * 17 16 14 33 33 H 1.09009 * 109.90544 * 241.71086 * 17 16 14 34 34 H 1.09002 * 110.74476 * 264.43818 * 18 17 16 35 35 H 1.09002 * 110.73934 * 141.10065 * 18 17 16 36 36 H 1.08997 * 109.22405 * 307.34265 * 21 11 10 37 37 H 1.08997 * 109.22673 * 66.74263 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5107 -4.9343 -0.0012 12 6 0.7798 -5.1216 1.2617 13 6 -0.1241 -6.3470 1.1210 14 6 0.6891 -7.5824 0.7931 15 1 0.0112 -8.4063 0.5700 16 7 1.5632 -7.9909 1.9024 17 6 2.7765 -8.6047 1.3242 18 6 2.6350 -8.5323 -0.2121 19 6 1.6256 -7.3621 -0.4111 20 1 1.0985 -7.4042 -1.3643 21 6 2.4150 -6.0627 -0.2387 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6240 -2.5568 -0.8903 25 1 2.8719 -3.6044 -0.8906 26 1 2.8719 -3.6044 0.8894 27 1 1.4882 -5.2804 2.0748 28 1 0.1727 -4.2402 1.4677 29 1 -0.8456 -6.1705 0.3232 30 1 -0.6578 -6.5074 2.0579 31 1 1.7998 -7.2022 2.4857 32 1 3.6600 -8.0511 1.6420 33 1 2.8550 -9.6439 1.6438 34 1 2.2292 -9.4638 -0.6068 35 1 3.5929 -8.2994 -0.6774 36 1 2.9959 -5.8732 -1.1413 37 1 3.0923 -6.1646 0.6092 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306194486.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:40 Heat of formation + Delta-G solvation = -6.868634 kcal Electronic energy + Delta-G solvation = -15971.601829 eV Core-core repulsion = 13554.764917 eV Total energy + Delta-G solvation = -2416.836912 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.17140 -36.32243 -33.17184 -32.26620 -30.92490 -28.82310 -27.78226 -25.00120 -23.06435 -22.67270 -21.01207 -19.83642 -18.72444 -16.54192 -16.23821 -15.61447 -14.99947 -14.57611 -14.48062 -14.06335 -13.61800 -13.07265 -12.72268 -12.33465 -12.13743 -11.90695 -11.83950 -11.45852 -11.21106 -11.02442 -10.90343 -10.74373 -10.59689 -10.28590 -10.21489 -9.81123 -9.31201 -9.13648 -8.49852 -8.33360 -7.74045 -6.00115 -4.02731 3.32856 3.37360 3.39558 4.20929 4.28428 4.48712 4.71118 4.82650 4.88851 5.20300 5.33869 5.36565 5.39833 5.41537 5.48675 5.65284 5.72207 5.83531 5.88881 5.95488 6.05276 6.09841 6.21414 6.25311 6.37739 6.48803 6.52762 6.90198 6.95028 7.35294 7.49455 7.55370 7.78773 7.88575 8.07606 8.42599 9.04182 9.60871 11.11199 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.057059 B = 0.005631 C = 0.005411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.601785 B = 4971.039147 C = 5173.059472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.053 0.947 9 C 0.029 3.971 10 C 0.062 3.938 11 N -0.533 5.533 12 C 0.051 3.949 13 C -0.117 4.117 14 C 0.083 3.917 15 H 0.075 0.925 16 N -0.677 5.677 17 C 0.045 3.955 18 C -0.139 4.139 19 C -0.109 4.109 20 H 0.094 0.906 21 C 0.059 3.941 22 H 0.261 0.739 23 H 0.017 0.983 24 H 0.025 0.975 25 H 0.060 0.940 26 H 0.018 0.982 27 H 0.023 0.977 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.336 0.664 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.282 -15.461 1.352 15.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.212 1.212 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.071 0.929 9 C -0.008 4.008 10 C -0.064 4.064 11 N -0.257 5.257 12 C -0.078 4.078 13 C -0.155 4.155 14 C -0.027 4.027 15 H 0.093 0.907 16 N -0.307 5.307 17 C -0.084 4.084 18 C -0.178 4.178 19 C -0.130 4.130 20 H 0.112 0.888 21 C -0.069 4.069 22 H 0.071 0.929 23 H 0.035 0.965 24 H 0.043 0.957 25 H 0.078 0.922 26 H 0.036 0.964 27 H 0.041 0.959 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.153 0.847 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 2.449 -15.940 1.131 16.166 hybrid contribution 1.636 1.709 0.285 2.383 sum 4.085 -14.230 1.416 14.873 Atomic orbital electron populations 1.69962 1.06018 1.26707 1.50510 1.24986 0.94827 0.99146 0.95262 0.86658 0.79585 0.83162 0.78580 1.21233 1.20309 1.20240 1.21154 0.92915 0.91106 1.51093 0.92920 1.19083 0.93925 0.90012 0.97778 1.22341 0.96772 0.88483 0.98815 1.62248 1.27880 1.02197 1.33400 1.22203 0.96773 0.98786 0.89993 1.21378 0.98460 0.93231 1.02464 1.21816 0.94680 0.96937 0.89293 0.90654 1.62130 1.15214 1.33649 1.19662 1.22683 0.92159 1.00031 0.93556 1.22998 0.99750 0.98746 0.96287 1.22779 0.96297 0.93904 1.00000 0.88780 1.22057 0.93961 0.90823 1.00084 0.92920 0.96488 0.95705 0.92197 0.96384 0.95869 0.89071 0.90201 0.91259 0.84726 0.93254 0.90980 0.91109 0.91055 0.91242 0.96018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.03 0.77 4.93 -27.89 -0.14 0.63 16 10 C 0.06 1.33 4.89 -3.82 -0.02 1.31 16 11 N -0.53 -9.69 4.67 -234.80 -1.10 -10.79 16 12 C 0.05 0.85 5.23 -3.75 -0.02 0.83 16 13 C -0.12 -1.63 5.64 -27.53 -0.16 -1.78 16 14 C 0.08 1.06 3.19 -67.81 -0.22 0.84 16 15 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 16 N -0.68 -8.41 7.20 -105.34 -0.76 -9.17 16 17 C 0.05 0.49 6.83 -2.59 -0.02 0.48 16 18 C -0.14 -1.47 6.32 -24.46 -0.15 -1.62 16 19 C -0.11 -1.39 3.79 -88.51 -0.34 -1.73 16 20 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 21 C 0.06 0.89 4.46 -4.01 -0.02 0.87 16 22 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.02 0.46 6.43 -51.92 -0.33 0.13 16 24 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 1.27 7.96 -51.93 -0.41 0.85 16 26 H 0.02 0.38 8.11 -51.93 -0.42 -0.04 16 27 H 0.02 0.38 6.84 -51.93 -0.36 0.02 16 28 H 0.09 1.73 6.20 -51.93 -0.32 1.41 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.34 4.29 7.14 -39.29 -0.28 4.01 16 32 H 0.05 0.53 7.83 -51.93 -0.41 0.12 16 33 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.71 7.98 -51.93 -0.41 0.29 16 36 H 0.07 1.04 7.97 -51.93 -0.41 0.63 16 37 H 0.02 0.33 6.86 -51.93 -0.36 -0.03 16 LS Contribution 282.21 15.07 4.25 4.25 Total: -1.00 -29.44 282.21 -9.59 -39.03 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -6.22 Total: -0.04 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -1.48 Total: -13.79 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: -1.12 Total: -46.12 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.44 -9.59 -39.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306194486.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.157 kcal (2) G-P(sol) polarization free energy of solvation -29.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds