Wall clock time and date at job start Mon Mar 30 2020 02:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47217 * 180.02562 * 10 9 7 12 12 C 1.47108 * 110.99872 * 293.11235 * 11 10 9 13 13 C 1.52917 * 108.46724 * 171.61598 * 12 11 10 14 14 C 1.51496 * 110.85823 * 58.62648 * 13 12 11 15 15 H 1.08998 * 109.08086 * 187.40510 * 14 13 12 16 16 N 1.47024 * 112.48125 * 67.21256 * 14 13 12 17 17 C 1.47759 * 107.96147 * 211.88605 * 16 14 13 18 18 C 1.54452 * 107.13093 * 1.26324 * 17 16 14 19 19 C 1.54133 * 112.25275 * 308.35431 * 14 13 12 20 20 H 1.09001 * 112.57193 * 282.44387 * 19 14 13 21 21 C 1.46538 * 110.99959 * 170.00049 * 11 10 9 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 24 24 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 25 25 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 26 26 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 27 27 H 1.08998 * 109.63526 * 291.30727 * 12 11 10 28 28 H 1.08998 * 109.63529 * 51.92123 * 12 11 10 29 29 H 1.09000 * 109.20295 * 298.26921 * 13 12 11 30 30 H 1.09006 * 109.16270 * 178.95151 * 13 12 11 31 31 H 1.00904 * 111.00360 * 333.75419 * 16 14 13 32 32 H 1.08996 * 109.90926 * 120.63963 * 17 16 14 33 33 H 1.09009 * 109.90544 * 241.71086 * 17 16 14 34 34 H 1.09002 * 110.74476 * 264.43818 * 18 17 16 35 35 H 1.09002 * 110.73934 * 141.10065 * 18 17 16 36 36 H 1.08997 * 109.22405 * 307.34265 * 21 11 10 37 37 H 1.08997 * 109.22673 * 66.74263 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5107 -4.9343 -0.0012 12 6 0.7798 -5.1216 1.2617 13 6 -0.1241 -6.3470 1.1210 14 6 0.6891 -7.5824 0.7931 15 1 0.0112 -8.4063 0.5700 16 7 1.5632 -7.9909 1.9024 17 6 2.7765 -8.6047 1.3242 18 6 2.6350 -8.5323 -0.2121 19 6 1.6256 -7.3621 -0.4111 20 1 1.0985 -7.4042 -1.3643 21 6 2.4150 -6.0627 -0.2387 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6240 -2.5568 -0.8903 25 1 2.8719 -3.6044 -0.8906 26 1 2.8719 -3.6044 0.8894 27 1 1.4882 -5.2804 2.0748 28 1 0.1727 -4.2402 1.4677 29 1 -0.8456 -6.1705 0.3232 30 1 -0.6578 -6.5074 2.0579 31 1 1.7998 -7.2022 2.4857 32 1 3.6600 -8.0511 1.6420 33 1 2.8550 -9.6439 1.6438 34 1 2.2292 -9.4638 -0.6068 35 1 3.5929 -8.2994 -0.6774 36 1 2.9959 -5.8732 -1.1413 37 1 3.0923 -6.1646 0.6092 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306194486.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:40 Heat of formation + Delta-G solvation = -27.588471 kcal Electronic energy + Delta-G solvation = -15972.500308 eV Core-core repulsion = 13554.764917 eV Total energy + Delta-G solvation = -2417.735392 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.28783 -37.71948 -35.18890 -33.49067 -32.38887 -30.41128 -28.83834 -26.81748 -24.35074 -24.18267 -22.24369 -21.28546 -19.86953 -18.60758 -17.37477 -16.67996 -16.56070 -16.35947 -15.85595 -15.41596 -14.87058 -14.42543 -14.27542 -13.92332 -13.48324 -13.33951 -13.04373 -12.87754 -12.72279 -12.55451 -12.38425 -12.18049 -11.81010 -11.79954 -11.71019 -11.40464 -11.17537 -10.99630 -10.53988 -9.47605 -9.18542 -8.21046 -6.32796 1.39444 1.42620 1.50653 2.39306 2.98985 3.12207 3.25852 3.69133 3.78231 3.86812 4.12871 4.15348 4.31255 4.35509 4.45473 4.45715 4.50796 4.57304 4.66575 4.81762 4.89190 5.01980 5.02705 5.08539 5.10961 5.15582 5.27321 5.31879 5.43755 5.64368 5.76571 5.95069 6.08452 6.27848 6.30558 6.37560 6.83917 7.36371 8.90881 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.057059 B = 0.005631 C = 0.005411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.601785 B = 4971.039147 C = 5173.059472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.966 3.034 4 H -0.282 1.282 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.038 3.962 10 C 0.079 3.921 11 N -0.545 5.545 12 C 0.053 3.947 13 C -0.109 4.109 14 C 0.086 3.914 15 H 0.086 0.914 16 N -0.681 5.681 17 C 0.043 3.957 18 C -0.129 4.129 19 C -0.110 4.110 20 H 0.095 0.905 21 C 0.061 3.939 22 H 0.264 0.736 23 H -0.005 1.005 24 H -0.008 1.008 25 H 0.061 0.939 26 H 0.017 0.983 27 H 0.030 0.970 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.332 0.668 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.586 -16.468 1.366 17.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.207 1.207 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.077 0.923 9 C 0.001 3.999 10 C -0.048 4.048 11 N -0.269 5.269 12 C -0.075 4.075 13 C -0.147 4.147 14 C -0.024 4.024 15 H 0.104 0.896 16 N -0.310 5.310 17 C -0.086 4.086 18 C -0.168 4.168 19 C -0.130 4.130 20 H 0.113 0.887 21 C -0.067 4.067 22 H 0.073 0.927 23 H 0.013 0.987 24 H 0.010 0.990 25 H 0.080 0.920 26 H 0.035 0.965 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.149 0.851 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.764 -16.975 1.144 17.425 hybrid contribution 1.196 1.988 0.290 2.338 sum 4.960 -14.986 1.435 15.851 Atomic orbital electron populations 1.70103 1.07830 1.27886 1.51247 1.25956 0.95739 1.03294 0.94523 0.85487 0.78272 0.78014 0.79177 1.20710 1.19183 1.19148 1.21593 0.93466 0.92346 1.51220 0.92303 1.18898 0.94136 0.91825 0.95048 1.21965 0.95400 0.88683 0.98779 1.62176 1.28422 1.02003 1.34287 1.22148 0.96833 0.98862 0.89683 1.21302 0.97955 0.92521 1.02921 1.21785 0.94830 0.96323 0.89494 0.89612 1.62180 1.15964 1.33386 1.19494 1.22777 0.91510 1.00608 0.93742 1.22966 0.99512 0.98222 0.96095 1.22778 0.96769 0.93400 1.00042 0.88703 1.22130 0.93831 0.90535 1.00167 0.92705 0.98685 0.99008 0.92018 0.96469 0.95183 0.92279 0.90896 0.90048 0.85147 0.93106 0.89735 0.89587 0.90151 0.91136 0.95650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 2 C 0.00 0.18 5.46 84.66 0.46 0.64 16 3 Si 0.97 44.48 29.54 68.60 2.03 46.51 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 5 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.55 -31.69 9.11 25.60 0.23 -31.46 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.04 2.08 4.93 29.85 0.15 2.23 16 10 C 0.08 3.43 4.89 86.30 0.42 3.85 16 11 N -0.54 -19.89 4.67 -896.78 -4.19 -24.08 16 12 C 0.05 1.79 5.23 86.24 0.45 2.24 16 13 C -0.11 -2.96 5.64 30.07 0.17 -2.79 16 14 C 0.09 2.02 3.19 44.78 0.14 2.16 16 15 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 16 N -0.68 -15.39 7.20 -487.19 -3.51 -18.90 16 17 C 0.04 0.81 6.83 86.63 0.59 1.40 16 18 C -0.13 -2.33 6.32 32.06 0.20 -2.13 16 19 C -0.11 -2.56 3.79 -9.43 -0.04 -2.60 16 20 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 21 C 0.06 1.76 4.46 86.38 0.39 2.15 16 22 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 23 H -0.01 -0.30 6.43 -2.38 -0.02 -0.31 16 24 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 25 H 0.06 2.62 7.96 -2.39 -0.02 2.60 16 26 H 0.02 0.74 8.11 -2.39 -0.02 0.72 16 27 H 0.03 0.97 6.84 -2.39 -0.02 0.95 16 28 H 0.06 2.37 6.20 -2.39 -0.01 2.36 16 29 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.33 7.92 7.14 -89.69 -0.64 7.28 16 32 H 0.05 0.95 7.83 -2.39 -0.02 0.94 16 33 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 1.33 7.98 -2.39 -0.02 1.31 16 36 H 0.07 2.01 7.97 -2.39 -0.02 1.99 16 37 H 0.03 0.72 6.86 -2.39 -0.02 0.70 16 Total: -1.00 -63.43 282.21 -1.82 -65.25 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.39 Total: 12.54 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: 3.17 Total: -24.29 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -7.41 Total: -100.01 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -63.43 -1.82 -65.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306194486.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.665 kcal (2) G-P(sol) polarization free energy of solvation -63.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds