Wall clock time and date at job start Mon Mar 30 2020 02:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99793 * 2 1 4 4 H 1.48510 * 109.47027 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47284 * 299.99876 * 3 2 1 6 6 H 1.48502 * 109.47380 * 60.00040 * 3 2 1 7 7 C 1.37872 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00022 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00362 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47398 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47161 * 184.74422 * 10 9 7 12 12 C 1.47204 * 110.96313 * 303.19974 * 11 10 9 13 13 C 1.52875 * 108.08849 * 189.16422 * 12 11 10 14 14 C 1.51083 * 111.31231 * 301.56921 * 13 12 11 15 15 H 1.08998 * 109.30373 * 172.08104 * 14 13 12 16 16 C 1.53995 * 112.48736 * 294.10617 * 14 13 12 17 17 N 1.48181 * 104.15117 * 160.01773 * 16 14 13 18 18 C 1.47560 * 108.56806 * 336.59893 * 17 16 14 19 19 C 1.54163 * 113.13828 * 49.60934 * 14 13 12 20 20 H 1.09001 * 112.66517 * 80.40903 * 19 14 13 21 21 C 1.46455 * 110.99747 * 65.90822 * 11 10 9 22 22 H 0.97004 * 120.00211 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47190 * 59.99333 * 9 7 2 24 24 H 1.09003 * 109.47004 * 299.99836 * 9 7 2 25 25 H 1.09004 * 109.46891 * 64.74532 * 10 9 7 26 26 H 1.08997 * 109.46740 * 304.74769 * 10 9 7 27 27 H 1.08993 * 109.76868 * 69.50449 * 12 11 10 28 28 H 1.08996 * 109.76608 * 308.82326 * 12 11 10 29 29 H 1.09003 * 109.10902 * 181.09481 * 13 12 11 30 30 H 1.09000 * 109.06541 * 62.01204 * 13 12 11 31 31 H 1.09002 * 110.49503 * 41.35619 * 16 14 13 32 32 H 1.09001 * 110.60681 * 278.74530 * 16 14 13 33 33 H 1.00905 * 110.99493 * 98.86101 * 17 16 14 34 34 H 1.09004 * 109.92308 * 239.94043 * 18 17 16 35 35 H 1.08991 * 110.10893 * 118.70573 * 18 17 16 36 36 H 1.09001 * 109.15478 * 52.39565 * 21 11 10 37 37 H 1.08998 * 109.15302 * 293.16615 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5144 -4.9312 -0.1140 12 6 0.5288 -5.0711 0.9705 13 6 -0.0258 -6.4950 0.9270 14 6 -0.6624 -6.7958 -0.4097 15 1 -0.9190 -7.8542 -0.4566 16 6 -1.9208 -5.9464 -0.6672 17 7 -2.0989 -5.9991 -2.1373 18 6 -0.7954 -6.3046 -2.7579 19 6 0.2376 -6.4275 -1.6059 20 1 0.9960 -7.1835 -1.8094 21 6 0.8488 -5.0380 -1.4142 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 2.8146 -3.6533 0.9300 26 1 2.9265 -3.5576 -0.8439 27 1 -0.2812 -4.3561 0.8269 28 1 1.0108 -4.8930 1.9317 29 1 -0.7728 -6.6111 1.7124 30 1 0.7876 -7.1994 1.1015 31 1 -1.7618 -4.9193 -0.3387 32 1 -2.7850 -6.3782 -0.1623 33 1 -2.7913 -6.6871 -2.3932 34 1 -0.5065 -5.4978 -3.4315 35 1 -0.8529 -7.2442 -3.3072 36 1 1.5768 -4.8553 -2.2047 37 1 0.0596 -4.2886 -1.4747 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306251315.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:48 Heat of formation + Delta-G solvation = -28.065687 kcal Electronic energy + Delta-G solvation = -16237.789421 eV Core-core repulsion = 13820.033335 eV Total energy + Delta-G solvation = -2417.756086 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.24528 -37.91003 -35.21298 -33.66723 -32.07512 -30.48931 -28.41781 -26.72763 -24.61966 -24.25420 -22.34646 -21.68971 -19.31501 -18.57338 -17.76541 -16.69079 -16.48723 -16.29719 -15.56233 -15.13243 -14.79443 -14.51365 -14.20552 -14.05512 -13.67921 -13.38429 -13.17456 -12.91125 -12.75554 -12.52201 -12.35530 -12.18156 -11.94861 -11.64100 -11.60772 -11.29810 -11.22416 -11.05786 -10.59060 -9.39114 -9.10342 -8.23254 -6.36443 1.36744 1.37170 1.50957 2.37299 3.08689 3.08753 3.31388 3.60251 3.72880 4.00203 4.18817 4.29173 4.31305 4.42224 4.47883 4.53593 4.66192 4.67689 4.76552 4.81029 4.88237 4.96736 4.99572 5.07631 5.16151 5.18964 5.32397 5.41222 5.45480 5.55331 5.72671 5.88011 6.01083 6.23266 6.32753 6.58787 6.81492 7.33257 8.87718 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.038356 B = 0.006877 C = 0.006541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.836374 B = 4070.830130 C = 4279.696657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.007 3.993 10 C 0.067 3.933 11 N -0.526 5.526 12 C 0.049 3.951 13 C -0.093 4.093 14 C -0.105 4.105 15 H 0.097 0.903 16 C 0.050 3.950 17 N -0.701 5.701 18 C 0.051 3.949 19 C -0.090 4.090 20 H 0.106 0.894 21 C 0.062 3.938 22 H 0.263 0.737 23 H -0.015 1.015 24 H -0.011 1.011 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.012 0.988 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.039 0.961 32 H 0.087 0.913 33 H 0.350 0.650 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.583 -15.868 -1.611 16.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.183 1.183 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.032 4.032 10 C -0.061 4.061 11 N -0.248 5.248 12 C -0.079 4.079 13 C -0.131 4.131 14 C -0.124 4.124 15 H 0.115 0.885 16 C -0.079 4.079 17 N -0.331 5.331 18 C -0.079 4.079 19 C -0.109 4.109 20 H 0.125 0.875 21 C -0.066 4.066 22 H 0.072 0.928 23 H 0.003 0.997 24 H 0.008 0.992 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.030 0.970 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.105 0.895 33 H 0.167 0.833 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -1.352 -15.453 -1.696 15.605 hybrid contribution -0.342 1.270 0.122 1.321 sum -1.695 -14.184 -1.573 14.371 Atomic orbital electron populations 1.70129 1.07927 1.27677 1.51530 1.26024 0.95759 1.03542 0.94563 0.85364 0.79149 0.78531 0.77802 1.18344 1.20415 1.20242 1.21666 0.93595 0.92258 1.50710 0.91967 1.19463 0.94975 0.94338 0.94374 1.22122 0.96028 0.86819 1.01089 1.62756 1.26300 1.32940 1.02840 1.22175 0.93597 0.97424 0.94716 1.20951 1.00388 0.95001 0.96799 1.21913 0.95045 1.00680 0.94803 0.88498 1.22781 0.97771 0.99013 0.88312 1.61605 1.09170 1.54255 1.08070 1.22885 0.88031 1.00691 0.96259 1.22379 0.97304 0.95946 0.95303 0.87544 1.22044 0.96440 0.96716 0.91420 0.92843 0.99659 0.99229 0.91531 0.92007 0.96955 0.91341 0.90147 0.90167 0.94281 0.89501 0.83282 0.92540 0.90028 0.92063 0.97259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.66 13.29 21.45 0.28 -58.37 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.97 45.39 29.54 68.60 2.03 47.42 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.54 -31.98 9.11 25.60 0.23 -31.75 16 8 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.01 0.37 4.19 29.85 0.13 0.50 16 10 C 0.07 2.97 5.31 86.30 0.46 3.43 16 11 N -0.53 -19.72 4.90 -896.86 -4.40 -24.11 16 12 C 0.05 1.73 4.54 86.20 0.39 2.12 16 13 C -0.09 -2.37 5.55 29.93 0.17 -2.20 16 14 C -0.10 -2.48 2.95 -10.69 -0.03 -2.51 16 15 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 16 C 0.05 1.35 6.51 86.39 0.56 1.92 16 17 N -0.70 -18.24 7.41 -503.35 -3.73 -21.97 16 18 C 0.05 1.25 6.89 86.94 0.60 1.85 16 19 C -0.09 -2.36 3.71 -9.64 -0.04 -2.39 16 20 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 21 C 0.06 2.24 3.78 86.39 0.33 2.57 16 22 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 23 H -0.01 -0.91 6.48 -2.39 -0.02 -0.92 16 24 H -0.01 -0.63 6.85 -2.39 -0.02 -0.65 16 25 H 0.07 2.85 8.14 -2.38 -0.02 2.83 16 26 H 0.06 2.69 8.03 -2.39 -0.02 2.67 16 27 H 0.01 0.52 5.47 -2.39 -0.01 0.50 16 28 H 0.07 2.39 8.10 -2.39 -0.02 2.37 16 29 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.04 1.41 6.11 -2.39 -0.01 1.39 16 32 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.35 6.88 8.91 -89.69 -0.80 6.08 16 34 H 0.06 1.61 7.74 -2.39 -0.02 1.59 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 2.20 8.01 -2.39 -0.02 2.18 16 37 H 0.01 0.41 5.63 -2.39 -0.01 0.39 16 Total: -1.00 -67.92 278.84 -2.31 -70.23 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.24 Total: 12.88 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 3.26 Total: -26.07 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -7.84 Total: -104.46 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -67.92 -2.31 -70.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306251315.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.168 kcal (2) G-P(sol) polarization free energy of solvation -67.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds