Wall clock time and date at job start Mon Mar 30 2020 03:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 110.36422 * 2 1 4 4 C 1.54382 * 110.50986 * 122.41405 * 2 1 3 5 5 H 1.09000 * 110.32278 * 23.69114 * 4 2 1 6 6 N 1.46897 * 110.32430 * 261.57983 * 4 2 1 7 7 C 1.54456 * 105.07671 * 142.78186 * 4 2 1 8 8 C 1.54378 * 104.96917 * 359.85175 * 7 4 2 9 9 N 1.48558 * 110.41431 * 237.64830 * 2 1 3 10 10 C 1.46903 * 110.99856 * 82.06217 * 9 2 1 11 11 C 1.53002 * 109.46921 * 192.64732 * 10 9 2 12 12 C 1.50694 * 115.55101 * 294.49107 * 11 10 9 13 13 H 1.08002 * 120.00018 * 145.04102 * 12 11 10 14 14 C 1.37872 * 120.00379 * 325.04357 * 12 11 10 15 15 N 1.31517 * 119.99751 * 354.41278 * 14 12 11 16 16 Si 1.86798 * 120.00481 * 174.41847 * 14 12 11 17 17 H 1.48499 * 109.47519 * 89.99814 * 16 14 12 18 18 H 1.48501 * 109.47215 * 210.00230 * 16 14 12 19 19 H 1.48500 * 109.46917 * 329.99518 * 16 14 12 20 20 C 1.53000 * 117.49636 * 148.81854 * 11 10 9 21 21 C 1.53005 * 117.49580 * 80.16194 * 11 10 9 22 22 H 1.09006 * 109.47379 * 182.34847 * 1 2 3 23 23 H 1.08996 * 109.47401 * 302.35015 * 1 2 3 24 24 H 1.09003 * 109.47354 * 62.35292 * 1 2 3 25 25 H 1.00900 * 110.99942 * 180.02562 * 6 4 2 26 26 H 1.00901 * 111.00140 * 303.95189 * 6 4 2 27 27 H 1.08997 * 110.29757 * 241.02289 * 7 4 2 28 28 H 1.08996 * 110.43558 * 118.74966 * 7 4 2 29 29 H 1.08993 * 110.41204 * 217.44749 * 8 7 4 30 30 H 1.09008 * 110.41314 * 95.11962 * 8 7 4 31 31 H 1.09000 * 109.47286 * 312.64487 * 10 9 2 32 32 H 1.08998 * 109.47235 * 72.65336 * 10 9 2 33 33 H 0.97002 * 120.00306 * 185.01418 * 15 14 12 34 34 H 1.09002 * 117.50298 * 0.02562 * 20 11 10 35 35 H 1.09001 * 117.49812 * 145.02136 * 20 11 10 36 36 H 1.08997 * 117.49828 * 214.97332 * 21 11 10 37 37 H 1.08993 * 117.50329 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0708 -0.7751 1.2207 5 1 1.3268 -1.4877 1.5767 6 7 2.4385 0.1570 2.2949 7 6 3.3240 -1.5153 0.7035 8 6 3.4301 -1.1265 -0.7867 9 7 2.0481 -0.7450 -1.1762 10 6 2.0542 0.1031 -2.3756 11 6 2.2868 -0.7657 -3.6134 12 6 3.6348 -1.4346 -3.6940 13 1 3.7239 -2.4192 -4.1290 14 6 4.7543 -0.7899 -3.2124 15 7 4.6655 0.4503 -2.7838 16 14 6.3972 -1.6777 -3.1689 17 1 7.1187 -1.4470 -4.4462 18 1 7.2107 -1.1585 -2.0401 19 1 6.1685 -3.1334 -2.9854 20 6 1.6433 -0.3128 -4.9254 21 6 1.0856 -1.5267 -4.1781 22 1 -0.3634 -1.0268 0.0421 23 1 -0.3634 0.5499 0.8681 24 1 -0.3634 0.4769 -0.9103 25 1 2.7941 -0.3393 3.0982 26 1 3.1052 0.8403 1.9682 27 1 3.1956 -2.5928 0.8054 28 1 4.2109 -1.1859 1.2447 29 1 3.7708 -1.9763 -1.3780 30 1 4.1072 -0.2814 -0.9119 31 1 1.0951 0.6132 -2.4648 32 1 2.8522 0.8411 -2.2947 33 1 5.4649 0.9284 -2.5133 34 1 1.0546 0.6044 -4.9070 35 1 2.1948 -0.4989 -5.8470 36 1 1.2704 -2.5109 -4.6084 37 1 0.1298 -1.4087 -3.6677 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307054406.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:38 Heat of formation + Delta-G solvation = 37.324633 kcal Electronic energy + Delta-G solvation = -16735.428388 eV Core-core repulsion = 14320.507839 eV Total energy + Delta-G solvation = -2414.920549 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.73695 -36.31099 -33.08411 -32.33021 -30.49396 -28.72037 -25.67840 -24.16094 -23.89681 -21.05424 -20.16981 -19.43797 -18.76502 -16.23037 -15.54241 -14.84711 -14.77613 -14.32967 -13.74583 -13.54573 -13.03361 -12.71262 -12.48867 -12.16924 -11.54832 -11.28249 -11.23366 -11.06515 -10.77185 -10.61688 -10.47206 -10.37165 -10.21696 -10.03261 -9.76403 -9.23353 -8.90200 -8.61582 -8.35635 -8.07959 -7.20285 -5.93828 -4.07547 3.20395 3.28711 3.33041 4.30241 4.70464 4.97212 5.19330 5.24407 5.44338 5.61644 5.74183 5.92829 6.07456 6.14712 6.21198 6.26819 6.34976 6.46945 6.52562 6.60754 6.73392 6.77101 6.83624 6.91079 7.03352 7.16345 7.28895 7.37575 7.41114 7.43455 7.57230 7.66421 7.97963 8.20558 8.38356 8.48380 8.86933 9.47253 10.90991 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.023186 B = 0.013035 C = 0.009330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.336828 B = 2147.600327 C = 3000.455007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.064 3.936 3 H 0.043 0.957 4 C 0.093 3.907 5 H 0.081 0.919 6 N -0.844 5.844 7 C -0.169 4.169 8 C 0.038 3.962 9 N -0.490 5.490 10 C 0.070 3.930 11 C 0.063 3.937 12 C -0.466 4.466 13 H 0.058 0.942 14 C 0.070 3.930 15 N -0.885 5.885 16 Si 0.884 3.116 17 H -0.280 1.280 18 H -0.284 1.284 19 H -0.272 1.272 20 C -0.208 4.208 21 C -0.200 4.200 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.334 0.666 26 H 0.338 0.662 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.024 0.976 32 H 0.106 0.894 33 H 0.260 0.740 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.649 -0.409 6.537 7.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.046 4.046 3 H 0.061 0.939 4 C -0.019 4.019 5 H 0.099 0.901 6 N -0.372 5.372 7 C -0.209 4.209 8 C -0.090 4.090 9 N -0.215 5.215 10 C -0.058 4.058 11 C 0.062 3.938 12 C -0.503 4.503 13 H 0.076 0.924 14 C -0.129 4.129 15 N -0.525 5.525 16 Si 0.712 3.288 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.196 1.196 20 C -0.247 4.247 21 C -0.238 4.238 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.146 0.854 26 H 0.151 0.849 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.124 0.876 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.642 -0.542 6.541 7.506 hybrid contribution 2.319 -0.142 -0.137 2.328 sum -1.323 -0.685 6.404 6.575 Atomic orbital electron populations 1.21607 0.94835 1.01448 1.00502 1.22505 0.95341 0.95819 0.90917 0.93870 1.22258 0.96008 0.92966 0.90717 0.90075 1.58949 1.50255 1.18970 1.09032 1.23356 0.97275 1.00623 0.99659 1.23412 0.91561 1.03055 0.90983 1.65255 1.18372 1.36520 1.01325 1.22182 0.99370 0.95805 0.88393 1.18863 0.90685 0.95425 0.88819 1.20616 0.90439 1.02144 1.37136 0.92420 1.24902 0.98596 0.94982 0.94465 1.69701 1.27926 1.09834 1.45069 0.86707 0.83938 0.80350 0.77839 1.20637 1.20974 1.19637 1.22963 1.06000 0.96446 0.99291 1.22753 0.99239 0.95013 1.06751 0.92635 0.93078 0.93186 0.85383 0.84906 0.92186 0.92959 0.89399 0.90801 0.95737 0.87649 0.92950 0.91970 0.90735 0.91211 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 9.36 37.15 0.35 -1.76 16 2 C 0.06 1.18 2.55 -66.07 -0.17 1.01 16 3 H 0.04 0.86 7.79 -51.93 -0.40 0.45 16 4 C 0.09 1.52 3.76 -66.23 -0.25 1.27 16 5 H 0.08 1.31 7.83 -51.93 -0.41 0.90 16 6 N -0.84 -11.88 9.18 -3.41 -0.03 -11.91 16 7 C -0.17 -2.99 6.77 -25.24 -0.17 -3.16 16 8 C 0.04 0.82 4.50 -2.18 -0.01 0.82 16 9 N -0.49 -10.59 5.00 -222.14 -1.11 -11.70 16 10 C 0.07 1.65 4.51 -3.82 -0.02 1.63 16 11 C 0.06 1.55 2.04 -155.66 -0.32 1.23 16 12 C -0.47 -12.26 7.44 -34.44 -0.26 -12.52 16 13 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 14 C 0.07 1.79 3.06 -17.82 -0.05 1.74 16 15 N -0.89 -22.89 8.42 55.43 0.47 -22.43 16 16 Si 0.88 20.19 29.34 -169.99 -4.99 15.20 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 C -0.21 -4.81 9.92 -26.69 -0.26 -5.07 16 21 C -0.20 -4.53 9.96 -26.69 -0.27 -4.79 16 22 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.85 7.26 -51.93 -0.38 0.48 16 25 H 0.33 3.99 9.08 -39.29 -0.36 3.64 16 26 H 0.34 4.79 8.87 -39.29 -0.35 4.44 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 0.86 7.95 -51.93 -0.41 0.44 16 29 H 0.09 2.13 5.90 -51.93 -0.31 1.82 16 30 H 0.07 1.75 5.42 -51.92 -0.28 1.47 16 31 H 0.02 0.56 7.05 -51.93 -0.37 0.19 16 32 H 0.11 2.73 5.02 -51.93 -0.26 2.47 16 33 H 0.26 6.50 8.32 -40.82 -0.34 6.16 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 36 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 37 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 282.41 15.07 4.26 4.26 Total: -1.00 -25.77 282.41 -8.86 -34.63 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -6.02 Total: 11.56 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -1.43 Total: -19.60 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -0.68 Total: -46.04 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.99 Total: 15.20 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -25.77 -8.86 -34.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307054406.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.952 kcal (2) G-P(sol) polarization free energy of solvation -25.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds