Wall clock time and date at job start Mon Mar 30 2020 02:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46888 * 2 1 4 4 H 1.08995 * 109.46898 * 304.99382 * 3 2 1 5 5 C 1.50705 * 109.46766 * 184.99980 * 3 2 1 6 6 H 1.08002 * 119.99922 * 239.99892 * 5 3 2 7 7 C 1.37877 * 119.99843 * 60.00087 * 5 3 2 8 8 N 1.31514 * 120.00207 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99452 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47652 * 60.00061 * 9 7 5 11 11 H 1.48500 * 109.46748 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47224 * 299.99629 * 9 7 5 13 13 N 1.46900 * 109.47334 * 65.00080 * 3 2 1 14 14 C 1.47606 * 111.81301 * 71.25810 * 13 3 2 15 15 C 1.54914 * 103.61289 * 159.52373 * 14 13 3 16 16 C 1.54417 * 102.98288 * 322.87775 * 15 14 13 17 17 H 1.09000 * 112.26586 * 260.04715 * 16 15 14 18 18 C 1.54236 * 108.97924 * 134.45767 * 16 15 14 19 19 N 1.48562 * 104.54910 * 223.14377 * 18 16 15 20 20 C 1.48497 * 104.20504 * 39.99859 * 19 18 16 21 21 C 1.47886 * 110.99963 * 189.99856 * 13 3 2 22 22 H 1.09002 * 111.76220 * 336.94605 * 21 13 3 23 23 H 1.09001 * 109.47080 * 60.00089 * 1 2 3 24 24 H 1.09000 * 109.46963 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47015 * 300.00291 * 1 2 3 26 26 H 1.09000 * 109.47015 * 239.99709 * 2 1 3 27 27 H 1.09001 * 109.47080 * 119.99911 * 2 1 3 28 28 H 0.96999 * 119.99625 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.90542 * 41.23475 * 14 13 3 30 30 H 1.09002 * 111.04882 * 278.36150 * 14 13 3 31 31 H 1.08998 * 110.70959 * 204.50394 * 15 14 13 32 32 H 1.08999 * 110.71143 * 81.25509 * 15 14 13 33 33 H 1.08994 * 110.42624 * 341.91338 * 18 16 15 34 34 H 1.09000 * 110.41805 * 104.38205 * 18 16 15 35 35 H 1.00894 * 111.00137 * 159.54634 * 19 18 16 36 36 H 1.08999 * 110.37248 * 201.82049 * 20 19 18 37 37 H 1.09003 * 110.46293 * 79.54301 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8813 -1.3817 10 1 6.5976 0.1474 -0.2349 11 1 6.3978 0.2167 -2.6503 12 1 6.4994 2.2815 -1.3821 13 7 1.6513 2.0993 1.2552 14 6 2.4183 1.5818 2.4053 15 6 2.2801 2.7000 3.4685 16 6 2.3321 3.9911 2.6230 17 1 3.3168 4.4581 2.6425 18 6 1.2123 4.9427 3.0911 19 7 0.6255 5.4752 1.8344 20 6 0.5928 4.3037 0.9225 21 6 1.9142 3.5534 1.1959 22 1 2.6778 3.7963 0.4571 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8293 -0.0618 -2.9494 29 1 3.4625 1.4455 2.1239 30 1 1.9922 0.6478 2.7716 31 1 3.1111 2.6668 4.1731 32 1 1.3269 2.6195 3.9910 33 1 0.4607 4.3951 3.6596 34 1 1.6276 5.7532 3.6901 35 1 -0.3033 5.8357 1.9934 36 1 0.5509 4.6322 -0.1160 37 1 -0.2604 3.6655 1.1524 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307328648.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:58 Heat of formation + Delta-G solvation = 7.217016 kcal Electronic energy + Delta-G solvation = -16638.703297 eV Core-core repulsion = 14222.477184 eV Total energy + Delta-G solvation = -2416.226113 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.43016 -35.87232 -33.33375 -31.61841 -30.31383 -27.86837 -27.02038 -25.44723 -22.89982 -21.30420 -20.97756 -19.18927 -18.74997 -16.40728 -16.01608 -15.44729 -14.54881 -14.14702 -13.67485 -13.51753 -12.86508 -12.76982 -12.32686 -11.95029 -11.91492 -11.50591 -11.34482 -11.00694 -10.83301 -10.60146 -10.58330 -10.39838 -10.17335 -10.02969 -9.90518 -9.59611 -9.43109 -9.07806 -8.36386 -8.27290 -7.17471 -5.99407 -4.12278 3.27724 3.33028 3.35547 4.39113 4.58317 4.99241 5.03474 5.24606 5.31224 5.42353 5.72791 5.82009 5.93362 5.97549 6.09599 6.20703 6.33942 6.36441 6.47484 6.50708 6.55168 6.62651 6.69959 6.83856 6.91341 6.97847 7.10609 7.18520 7.37876 7.58097 7.60971 7.75859 7.99417 8.15406 8.28495 8.46077 8.98152 9.54816 11.00223 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.027146 B = 0.010107 C = 0.008895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.201510 B = 2769.770884 C = 3146.972562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 C 0.209 3.791 4 H 0.037 0.963 5 C -0.544 4.544 6 H 0.059 0.941 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.516 5.516 14 C 0.041 3.959 15 C -0.120 4.120 16 C -0.102 4.102 17 H 0.080 0.920 18 C 0.046 3.954 19 N -0.671 5.671 20 C 0.049 3.951 21 C 0.076 3.924 22 H 0.075 0.925 23 H 0.038 0.962 24 H 0.024 0.976 25 H 0.046 0.954 26 H 0.091 0.909 27 H 0.030 0.970 28 H 0.262 0.738 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.040 0.960 34 H 0.069 0.931 35 H 0.328 0.672 36 H 0.071 0.929 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.117 4.648 8.081 10.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.146 4.146 3 C 0.102 3.898 4 H 0.055 0.945 5 C -0.583 4.583 6 H 0.077 0.923 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.240 5.240 14 C -0.087 4.087 15 C -0.159 4.159 16 C -0.122 4.122 17 H 0.099 0.901 18 C -0.083 4.083 19 N -0.299 5.299 20 C -0.080 4.080 21 C -0.034 4.034 22 H 0.093 0.907 23 H 0.057 0.943 24 H 0.043 0.957 25 H 0.065 0.935 26 H 0.110 0.890 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.142 0.858 36 H 0.090 0.910 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.052 4.777 7.661 9.896 hybrid contribution 1.203 -0.495 0.035 1.301 sum -2.849 4.282 7.696 9.256 Atomic orbital electron populations 1.21705 0.98982 0.98359 1.00435 1.21529 0.92121 0.99156 1.01795 1.19364 0.93093 0.91300 0.86065 0.94511 1.21699 0.92816 1.38315 1.05483 0.92331 1.24907 0.97777 0.95016 0.95656 1.69866 1.34869 1.38114 1.09403 0.86750 0.86234 0.78240 0.77349 1.20353 1.21248 1.20328 1.64390 1.53043 1.01089 1.05525 1.22976 0.99033 0.96310 0.90370 1.22639 1.00741 0.95024 0.97471 1.22689 0.98170 0.95326 0.95972 0.90133 1.22956 0.96288 0.96964 0.92096 1.63725 1.25701 1.30178 1.10253 1.22907 0.98162 0.90213 0.96740 1.22886 0.95209 0.89952 0.95352 0.90671 0.94296 0.95653 0.93506 0.89047 0.95163 0.92838 0.91803 0.91770 0.92230 0.91849 0.94222 0.91253 0.85779 0.91027 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.80 37.16 0.36 -2.45 16 2 C -0.11 -2.54 5.26 -26.73 -0.14 -2.68 16 3 C 0.21 5.07 1.65 -68.86 -0.11 4.95 16 4 H 0.04 1.00 8.08 -51.93 -0.42 0.58 16 5 C -0.54 -14.32 6.71 -34.44 -0.23 -14.55 16 6 H 0.06 1.55 6.03 -52.49 -0.32 1.23 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 8 N -0.88 -24.70 11.29 55.43 0.63 -24.07 16 9 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.52 -10.73 4.10 -215.37 -0.88 -11.62 16 14 C 0.04 0.80 5.64 -2.43 -0.01 0.79 16 15 C -0.12 -1.91 6.61 -24.98 -0.17 -2.08 16 16 C -0.10 -1.69 4.02 -88.17 -0.35 -2.04 16 17 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 18 C 0.05 0.66 7.01 -2.26 -0.02 0.65 16 19 N -0.67 -10.06 7.62 -109.79 -0.84 -10.90 16 20 C 0.05 0.85 7.18 -2.21 -0.02 0.84 16 21 C 0.08 1.48 3.16 -65.38 -0.21 1.27 16 22 H 0.08 1.69 7.19 -51.93 -0.37 1.32 16 23 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.92 7.75 -51.93 -0.40 0.52 16 26 H 0.09 2.42 5.95 -51.93 -0.31 2.11 16 27 H 0.03 0.70 7.17 -51.93 -0.37 0.33 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.06 1.38 5.44 -51.93 -0.28 1.10 16 30 H 0.06 1.22 7.70 -51.93 -0.40 0.82 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.95 7.19 -51.93 -0.37 0.58 16 33 H 0.04 0.54 7.19 -51.93 -0.37 0.17 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.33 4.14 8.92 -39.30 -0.35 3.79 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.05 0.87 7.99 -51.93 -0.41 0.45 16 LS Contribution 279.97 15.07 4.22 4.22 Total: -1.00 -26.92 279.97 -8.94 -35.86 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.06 Total: 4.05 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -0.99 Total: -13.54 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -1.09 Total: -46.59 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -26.92 -8.94 -35.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307328648.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.081 kcal (2) G-P(sol) polarization free energy of solvation -26.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds