Wall clock time and date at job start Mon Mar 30 2020 02:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46888 * 2 1 4 4 H 1.08995 * 109.46898 * 304.99382 * 3 2 1 5 5 C 1.50705 * 109.46766 * 184.99980 * 3 2 1 6 6 H 1.08002 * 119.99922 * 239.99892 * 5 3 2 7 7 C 1.37877 * 119.99843 * 60.00087 * 5 3 2 8 8 N 1.31514 * 120.00207 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99452 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47652 * 60.00061 * 9 7 5 11 11 H 1.48500 * 109.46748 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47224 * 299.99629 * 9 7 5 13 13 N 1.46900 * 109.47334 * 65.00080 * 3 2 1 14 14 C 1.47606 * 111.81301 * 71.25810 * 13 3 2 15 15 C 1.54914 * 103.61289 * 159.52373 * 14 13 3 16 16 C 1.54417 * 102.98288 * 322.87775 * 15 14 13 17 17 H 1.09000 * 112.26586 * 260.04715 * 16 15 14 18 18 C 1.54236 * 108.97924 * 134.45767 * 16 15 14 19 19 N 1.48562 * 104.54910 * 223.14377 * 18 16 15 20 20 C 1.48497 * 104.20504 * 39.99859 * 19 18 16 21 21 C 1.47886 * 110.99963 * 189.99856 * 13 3 2 22 22 H 1.09002 * 111.76220 * 336.94605 * 21 13 3 23 23 H 1.09001 * 109.47080 * 60.00089 * 1 2 3 24 24 H 1.09000 * 109.46963 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47015 * 300.00291 * 1 2 3 26 26 H 1.09000 * 109.47015 * 239.99709 * 2 1 3 27 27 H 1.09001 * 109.47080 * 119.99911 * 2 1 3 28 28 H 0.96999 * 119.99625 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.90542 * 41.23475 * 14 13 3 30 30 H 1.09002 * 111.04882 * 278.36150 * 14 13 3 31 31 H 1.08998 * 110.70959 * 204.50394 * 15 14 13 32 32 H 1.08999 * 110.71143 * 81.25509 * 15 14 13 33 33 H 1.08994 * 110.42624 * 341.91338 * 18 16 15 34 34 H 1.09000 * 110.41805 * 104.38205 * 18 16 15 35 35 H 1.00894 * 111.00137 * 159.54634 * 19 18 16 36 36 H 1.08999 * 110.37248 * 201.82049 * 20 19 18 37 37 H 1.09003 * 110.46293 * 79.54301 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8813 -1.3817 10 1 6.5976 0.1474 -0.2349 11 1 6.3978 0.2167 -2.6503 12 1 6.4994 2.2815 -1.3821 13 7 1.6513 2.0993 1.2552 14 6 2.4183 1.5818 2.4053 15 6 2.2801 2.7000 3.4685 16 6 2.3321 3.9911 2.6230 17 1 3.3168 4.4581 2.6425 18 6 1.2123 4.9427 3.0911 19 7 0.6255 5.4752 1.8344 20 6 0.5928 4.3037 0.9225 21 6 1.9142 3.5534 1.1959 22 1 2.6778 3.7963 0.4571 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8293 -0.0618 -2.9494 29 1 3.4625 1.4455 2.1239 30 1 1.9922 0.6478 2.7716 31 1 3.1111 2.6668 4.1731 32 1 1.3269 2.6195 3.9910 33 1 0.4607 4.3951 3.6596 34 1 1.6276 5.7532 3.6901 35 1 -0.3033 5.8357 1.9934 36 1 0.5509 4.6322 -0.1160 37 1 -0.2604 3.6655 1.1524 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307328648.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:58 Heat of formation + Delta-G solvation = -11.224298 kcal Electronic energy + Delta-G solvation = -16639.502972 eV Core-core repulsion = 14222.477184 eV Total energy + Delta-G solvation = -2417.025788 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.91353 -37.49892 -35.00245 -33.51933 -31.86317 -29.38088 -28.63885 -27.13919 -24.73251 -22.78617 -22.38653 -20.97422 -20.26509 -18.33857 -17.50154 -17.04009 -16.30040 -15.58829 -15.26508 -15.14842 -14.59960 -14.40184 -13.90779 -13.55721 -13.41071 -13.12392 -12.97352 -12.79530 -12.48364 -12.39928 -12.18237 -11.86666 -11.77788 -11.65047 -11.47179 -11.37520 -11.26774 -10.97763 -10.43601 -9.48351 -8.97107 -8.04400 -6.25651 1.36742 1.37399 1.44503 2.38936 3.13586 3.28877 3.57030 3.67385 3.98335 4.02141 4.39279 4.50423 4.54026 4.56643 4.67329 4.73751 4.81031 4.88055 4.90765 5.03495 5.05691 5.10657 5.19752 5.22098 5.29909 5.41674 5.42485 5.51523 5.62174 5.71918 5.83099 6.06654 6.18825 6.40503 6.49703 6.60850 6.96658 7.44415 8.91321 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.027146 B = 0.010107 C = 0.008895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.201510 B = 2769.770884 C = 3146.972562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 C 0.217 3.783 4 H -0.001 1.001 5 C -0.551 4.551 6 H 0.053 0.947 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.944 3.056 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.277 1.277 13 N -0.510 5.510 14 C 0.037 3.963 15 C -0.106 4.106 16 C -0.102 4.102 17 H 0.078 0.922 18 C 0.054 3.946 19 N -0.672 5.672 20 C 0.059 3.941 21 C 0.066 3.934 22 H 0.033 0.967 23 H 0.031 0.969 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.028 0.972 28 H 0.261 0.739 29 H 0.036 0.964 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.346 0.654 36 H 0.059 0.941 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.518 5.349 10.169 12.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.141 4.141 3 C 0.109 3.891 4 H 0.017 0.983 5 C -0.590 4.590 6 H 0.071 0.929 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.771 3.229 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.202 1.202 13 N -0.234 5.234 14 C -0.091 4.091 15 C -0.144 4.144 16 C -0.121 4.121 17 H 0.097 0.903 18 C -0.075 4.075 19 N -0.302 5.302 20 C -0.071 4.071 21 C -0.044 4.044 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.162 0.838 36 H 0.077 0.923 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.463 5.492 9.768 12.062 hybrid contribution 1.325 -0.688 -0.615 1.614 sum -3.139 4.804 9.153 10.804 Atomic orbital electron populations 1.21558 0.96328 0.99771 1.00542 1.21370 0.94452 0.98158 1.00110 1.19094 0.91812 0.91548 0.86635 0.98342 1.21958 0.94076 1.37665 1.05254 0.92883 1.25613 1.01731 0.95009 0.95558 1.69996 1.36291 1.38907 1.09782 0.85824 0.81561 0.78127 0.77416 1.19741 1.20905 1.20218 1.64366 1.52837 1.01806 1.04383 1.23016 0.97078 0.98057 0.90998 1.22586 1.02699 0.92560 0.96521 1.22710 0.99139 0.96402 0.93894 0.90321 1.22965 0.95573 0.97234 0.91746 1.63668 1.27167 1.28905 1.10450 1.22678 0.96735 0.90830 0.96836 1.22897 0.95530 0.89388 0.96566 0.94851 0.94980 0.93572 0.92485 0.92083 0.95326 0.92969 0.94575 0.91400 0.90037 0.89940 0.92724 0.88991 0.83796 0.92293 0.93201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.80 71.98 0.71 -4.32 16 2 C -0.10 -4.93 5.26 30.60 0.16 -4.76 16 3 C 0.22 10.88 1.65 44.17 0.07 10.95 16 4 H 0.00 -0.08 8.08 -2.39 -0.02 -0.10 16 5 C -0.55 -29.88 6.71 25.60 0.17 -29.71 16 6 H 0.05 2.88 6.03 -2.91 -0.02 2.87 16 7 C 0.02 1.15 5.29 84.65 0.45 1.60 16 8 N -0.91 -52.41 11.29 21.45 0.24 -52.17 16 9 Si 0.94 43.89 29.54 68.60 2.03 45.91 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 N -0.51 -21.26 4.10 -835.30 -3.43 -24.69 16 14 C 0.04 1.39 5.64 86.82 0.49 1.88 16 15 C -0.11 -3.05 6.61 31.73 0.21 -2.84 16 16 C -0.10 -3.17 4.02 -9.21 -0.04 -3.20 16 17 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 18 C 0.05 1.34 7.01 86.40 0.61 1.95 16 19 N -0.67 -18.52 7.62 -501.25 -3.82 -22.34 16 20 C 0.06 2.01 7.18 86.47 0.62 2.63 16 21 C 0.07 2.58 3.16 45.88 0.14 2.73 16 22 H 0.03 1.57 7.19 -2.39 -0.02 1.55 16 23 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.06 2.17 7.75 -2.39 -0.02 2.15 16 26 H 0.06 3.33 5.95 -2.39 -0.01 3.31 16 27 H 0.03 1.34 7.17 -2.39 -0.02 1.32 16 28 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 29 H 0.04 1.57 5.44 -2.39 -0.01 1.56 16 30 H 0.07 2.50 7.70 -2.39 -0.02 2.48 16 31 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.08 2.12 7.19 -2.39 -0.02 2.10 16 33 H 0.05 1.24 7.19 -2.39 -0.02 1.22 16 34 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.35 7.64 8.92 -89.70 -0.80 6.84 16 36 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.05 1.68 7.99 -2.39 -0.02 1.66 16 Total: -1.00 -59.10 279.97 -1.14 -60.24 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.24 Total: 16.15 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 3.59 Total: -23.11 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -7.00 Total: -99.20 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -59.10 -1.14 -60.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307328648.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.020 kcal (2) G-P(sol) polarization free energy of solvation -59.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds