Wall clock time and date at job start Mon Mar 30 2020 02:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47016 * 2 1 4 4 H 1.09003 * 109.46765 * 181.16929 * 3 2 1 5 5 C 1.50695 * 109.46784 * 301.16760 * 3 2 1 6 6 H 1.08005 * 120.00374 * 120.00274 * 5 3 2 7 7 C 1.37880 * 120.00451 * 300.00280 * 5 3 2 8 8 N 1.31513 * 119.99672 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00175 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46994 * 90.00090 * 9 7 5 11 11 H 1.48503 * 109.46859 * 209.99752 * 9 7 5 12 12 H 1.48499 * 109.47140 * 330.00019 * 9 7 5 13 13 N 1.46893 * 109.47331 * 61.16874 * 3 2 1 14 14 C 1.49884 * 111.80942 * 56.48937 * 13 3 2 15 15 C 1.54908 * 103.72312 * 159.03040 * 14 13 3 16 16 C 1.54413 * 102.98391 * 322.60158 * 15 14 13 17 17 H 1.08997 * 112.26951 * 260.04219 * 16 15 14 18 18 C 1.54241 * 108.98172 * 134.45657 * 16 15 14 19 19 N 1.48556 * 104.54596 * 223.14659 * 18 16 15 20 20 C 1.48497 * 104.21093 * 40.00152 * 19 18 16 21 21 C 1.47890 * 110.99921 * 173.75605 * 13 3 2 22 22 H 1.08997 * 111.76265 * 337.86137 * 21 13 3 23 23 H 1.09000 * 109.47726 * 305.25427 * 1 2 3 24 24 H 1.09001 * 109.47186 * 65.25309 * 1 2 3 25 25 H 1.09001 * 109.47206 * 185.24966 * 1 2 3 26 26 H 1.09001 * 109.47442 * 239.99560 * 2 1 3 27 27 H 1.09007 * 109.46849 * 119.99552 * 2 1 3 28 28 H 0.97003 * 119.99841 * 180.02562 * 8 7 5 29 29 H 1.09001 * 110.09372 * 40.59013 * 14 13 3 30 30 H 1.09005 * 110.76602 * 277.79183 * 14 13 3 31 31 H 1.09004 * 110.71204 * 204.22441 * 15 14 13 32 32 H 1.09005 * 110.86134 * 81.04932 * 15 14 13 33 33 H 1.08996 * 110.42069 * 341.91755 * 18 16 15 34 34 H 1.09005 * 110.41923 * 104.26276 * 18 16 15 35 35 H 1.00901 * 111.00541 * 280.44979 * 19 18 16 36 36 H 1.08997 * 110.36747 * 201.82689 * 20 19 18 37 37 H 1.08992 * 110.37638 * 79.48916 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1297 1.4426 -0.0210 5 6 1.5140 2.1612 -1.2157 6 1 0.8952 3.0386 -1.0988 7 6 1.8229 1.6986 -2.4774 8 7 2.5760 0.6300 -2.6198 9 14 1.1716 2.5899 -3.9843 10 1 2.1423 3.6340 -4.3999 11 1 0.9851 1.6184 -5.0919 12 1 -0.1304 3.2258 -3.6591 13 7 1.5735 2.1268 1.2132 14 6 1.9971 1.4057 2.4570 15 6 1.9162 2.4928 3.5577 16 6 2.4044 3.7628 2.8276 17 1 3.4471 3.9911 3.0485 18 6 1.4550 4.9310 3.1636 19 7 1.2395 5.6217 1.8661 20 6 1.1172 4.5172 0.8811 21 6 2.1686 3.4763 1.3225 22 1 3.0888 3.5602 0.7445 23 1 -0.3634 0.5932 0.8392 24 1 -0.3633 0.4302 -0.9333 25 1 -0.3634 -1.0234 0.0940 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 2.7936 0.3048 -3.5074 29 1 3.0191 1.0423 2.3495 30 1 1.3165 0.5833 2.6778 31 1 2.5764 2.2486 4.3899 32 1 0.8906 2.6179 3.9050 33 1 0.5105 4.5529 3.5547 34 1 1.9209 5.6049 3.8825 35 1 2.0193 6.2215 1.6418 36 1 1.3393 4.8782 -0.1231 37 1 0.1172 4.0853 0.9174 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307328649.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:00 Heat of formation + Delta-G solvation = 7.572514 kcal Electronic energy + Delta-G solvation = -16705.065467 eV Core-core repulsion = 14288.854770 eV Total energy + Delta-G solvation = -2416.210697 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.47931 -35.82348 -33.51483 -31.39674 -30.32298 -27.45609 -26.87824 -25.55889 -23.04191 -21.49440 -21.17161 -19.04205 -18.74624 -16.43161 -16.05310 -15.03512 -14.80907 -14.17982 -13.75833 -13.19445 -12.83561 -12.78688 -12.62228 -11.89946 -11.80381 -11.61889 -11.21749 -10.93720 -10.89258 -10.62826 -10.53252 -10.35964 -10.26428 -10.02042 -9.85870 -9.68298 -9.37270 -8.82103 -8.47680 -8.26688 -7.25170 -5.99331 -4.02227 3.30418 3.37886 3.42012 4.41517 4.63563 4.84465 4.99764 5.18436 5.30763 5.41036 5.63519 5.76793 5.84003 5.98963 6.05452 6.15646 6.24514 6.32995 6.39003 6.43229 6.55545 6.61248 6.72326 6.77280 6.82640 6.95921 7.12749 7.28229 7.41177 7.62031 7.70124 7.72163 7.86445 8.14615 8.34887 8.56172 9.03667 9.61856 11.07453 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.028530 B = 0.010768 C = 0.008631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.183890 B = 2599.694709 C = 3243.349866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.110 4.110 3 C 0.209 3.791 4 H -0.004 1.004 5 C -0.494 4.494 6 H 0.066 0.934 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.273 1.273 13 N -0.496 5.496 14 C 0.034 3.966 15 C -0.112 4.112 16 C -0.141 4.141 17 H 0.074 0.926 18 C 0.052 3.948 19 N -0.677 5.677 20 C 0.062 3.938 21 C 0.052 3.948 22 H 0.057 0.943 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.014 0.986 26 H 0.090 0.910 27 H 0.011 0.989 28 H 0.259 0.741 29 H 0.032 0.968 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.328 0.672 36 H 0.071 0.929 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.337 4.170 9.315 10.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.148 4.148 3 C 0.102 3.898 4 H 0.013 0.987 5 C -0.532 4.532 6 H 0.084 0.916 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.221 5.221 14 C -0.094 4.094 15 C -0.151 4.151 16 C -0.161 4.161 17 H 0.092 0.908 18 C -0.078 4.078 19 N -0.302 5.302 20 C -0.068 4.068 21 C -0.059 4.059 22 H 0.076 0.924 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.033 0.967 26 H 0.108 0.892 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.142 0.858 36 H 0.089 0.911 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.583 4.254 9.168 10.230 hybrid contribution 1.717 -0.165 -1.013 2.000 sum 0.134 4.088 8.155 9.123 Atomic orbital electron populations 1.21456 0.97213 0.97202 1.01864 1.21537 0.95299 0.98103 0.99909 1.19446 0.92829 0.91192 0.86284 0.98692 1.21098 1.30843 1.11913 0.89383 0.91622 1.24901 0.95324 0.95093 0.98850 1.69884 1.37644 1.23147 1.22680 0.86610 0.79428 0.79390 0.82718 1.20926 1.21371 1.19737 1.65257 1.54313 1.00554 1.01987 1.23386 0.98295 0.96703 0.91024 1.22498 1.00857 0.94689 0.97031 1.23365 0.99092 0.97020 0.96653 0.90761 1.23038 0.98339 0.93805 0.92590 1.63411 1.45508 1.18336 1.02968 1.23054 1.00271 0.88910 0.94539 1.23498 0.96766 0.92911 0.92766 0.92445 0.93588 0.92577 0.96715 0.89184 0.97000 0.93105 0.94991 0.90944 0.92301 0.91020 0.90280 0.91982 0.85792 0.91070 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.47 37.15 0.35 -2.30 16 2 C -0.11 -2.62 5.17 -26.73 -0.14 -2.76 16 3 C 0.21 5.11 1.52 -68.87 -0.10 5.01 16 4 H 0.00 -0.12 7.98 -51.93 -0.41 -0.54 16 5 C -0.49 -12.95 6.94 -34.44 -0.24 -13.19 16 6 H 0.07 1.72 5.84 -52.48 -0.31 1.41 16 7 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 8 N -0.89 -25.11 11.33 55.43 0.63 -24.48 16 9 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.50 -10.30 3.80 -213.40 -0.81 -11.11 16 14 C 0.03 0.61 5.33 -1.15 -0.01 0.61 16 15 C -0.11 -1.65 6.61 -24.98 -0.17 -1.82 16 16 C -0.14 -2.14 4.02 -88.17 -0.35 -2.49 16 17 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 18 C 0.05 0.73 7.01 -2.26 -0.02 0.71 16 19 N -0.68 -10.42 7.62 -109.79 -0.84 -11.26 16 20 C 0.06 1.13 5.70 -2.21 -0.01 1.12 16 21 C 0.05 0.98 3.00 -65.38 -0.20 0.78 16 22 H 0.06 1.21 7.72 -51.93 -0.40 0.81 16 23 H 0.05 0.98 7.48 -51.93 -0.39 0.59 16 24 H 0.06 1.34 7.38 -51.93 -0.38 0.96 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.09 2.40 6.10 -51.93 -0.32 2.08 16 27 H 0.01 0.25 6.88 -51.92 -0.36 -0.10 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.03 0.60 8.03 -51.93 -0.42 0.18 16 30 H 0.07 1.28 7.73 -51.93 -0.40 0.88 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.02 7.19 -51.93 -0.37 0.65 16 33 H 0.08 1.13 7.19 -51.93 -0.37 0.76 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.33 4.52 8.92 -39.29 -0.35 4.17 16 36 H 0.07 1.37 7.65 -51.93 -0.40 0.97 16 37 H 0.09 1.81 7.97 -51.93 -0.41 1.39 16 LS Contribution 278.61 15.07 4.20 4.20 Total: -1.00 -27.17 278.61 -8.94 -36.10 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.12 Total: 3.25 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -0.97 Total: -12.84 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: -1.02 Total: -46.85 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.17 -8.94 -36.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307328649.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.675 kcal (2) G-P(sol) polarization free energy of solvation -27.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds