Wall clock time and date at job start Mon Mar 30 2020 02:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47016 * 2 1 4 4 H 1.09003 * 109.46765 * 181.16929 * 3 2 1 5 5 C 1.50695 * 109.46784 * 301.16760 * 3 2 1 6 6 H 1.08005 * 120.00374 * 120.00274 * 5 3 2 7 7 C 1.37880 * 120.00451 * 300.00280 * 5 3 2 8 8 N 1.31513 * 119.99672 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00175 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46994 * 90.00090 * 9 7 5 11 11 H 1.48503 * 109.46859 * 209.99752 * 9 7 5 12 12 H 1.48499 * 109.47140 * 330.00019 * 9 7 5 13 13 N 1.46893 * 109.47331 * 61.16874 * 3 2 1 14 14 C 1.49884 * 111.80942 * 56.48937 * 13 3 2 15 15 C 1.54908 * 103.72312 * 159.03040 * 14 13 3 16 16 C 1.54413 * 102.98391 * 322.60158 * 15 14 13 17 17 H 1.08997 * 112.26951 * 260.04219 * 16 15 14 18 18 C 1.54241 * 108.98172 * 134.45657 * 16 15 14 19 19 N 1.48556 * 104.54596 * 223.14659 * 18 16 15 20 20 C 1.48497 * 104.21093 * 40.00152 * 19 18 16 21 21 C 1.47890 * 110.99921 * 173.75605 * 13 3 2 22 22 H 1.08997 * 111.76265 * 337.86137 * 21 13 3 23 23 H 1.09000 * 109.47726 * 305.25427 * 1 2 3 24 24 H 1.09001 * 109.47186 * 65.25309 * 1 2 3 25 25 H 1.09001 * 109.47206 * 185.24966 * 1 2 3 26 26 H 1.09001 * 109.47442 * 239.99560 * 2 1 3 27 27 H 1.09007 * 109.46849 * 119.99552 * 2 1 3 28 28 H 0.97003 * 119.99841 * 180.02562 * 8 7 5 29 29 H 1.09001 * 110.09372 * 40.59013 * 14 13 3 30 30 H 1.09005 * 110.76602 * 277.79183 * 14 13 3 31 31 H 1.09004 * 110.71204 * 204.22441 * 15 14 13 32 32 H 1.09005 * 110.86134 * 81.04932 * 15 14 13 33 33 H 1.08996 * 110.42069 * 341.91755 * 18 16 15 34 34 H 1.09005 * 110.41923 * 104.26276 * 18 16 15 35 35 H 1.00901 * 111.00541 * 280.44979 * 19 18 16 36 36 H 1.08997 * 110.36747 * 201.82689 * 20 19 18 37 37 H 1.08992 * 110.37638 * 79.48916 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1297 1.4426 -0.0210 5 6 1.5140 2.1612 -1.2157 6 1 0.8952 3.0386 -1.0988 7 6 1.8229 1.6986 -2.4774 8 7 2.5760 0.6300 -2.6198 9 14 1.1716 2.5899 -3.9843 10 1 2.1423 3.6340 -4.3999 11 1 0.9851 1.6184 -5.0919 12 1 -0.1304 3.2258 -3.6591 13 7 1.5735 2.1268 1.2132 14 6 1.9971 1.4057 2.4570 15 6 1.9162 2.4928 3.5577 16 6 2.4044 3.7628 2.8276 17 1 3.4471 3.9911 3.0485 18 6 1.4550 4.9310 3.1636 19 7 1.2395 5.6217 1.8661 20 6 1.1172 4.5172 0.8811 21 6 2.1686 3.4763 1.3225 22 1 3.0888 3.5602 0.7445 23 1 -0.3634 0.5932 0.8392 24 1 -0.3633 0.4302 -0.9333 25 1 -0.3634 -1.0234 0.0940 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 2.7936 0.3048 -3.5074 29 1 3.0191 1.0423 2.3495 30 1 1.3165 0.5833 2.6778 31 1 2.5764 2.2486 4.3899 32 1 0.8906 2.6179 3.9050 33 1 0.5105 4.5529 3.5547 34 1 1.9209 5.6049 3.8825 35 1 2.0193 6.2215 1.6418 36 1 1.3393 4.8782 -0.1231 37 1 0.1172 4.0853 0.9174 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307328649.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:59 Heat of formation + Delta-G solvation = -11.085105 kcal Electronic energy + Delta-G solvation = -16705.874522 eV Core-core repulsion = 14288.854770 eV Total energy + Delta-G solvation = -2417.019752 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.91356 -37.48585 -35.16543 -33.26099 -31.91463 -28.88003 -28.54516 -27.26772 -24.91570 -22.79899 -22.70880 -20.74568 -20.24259 -18.10368 -17.79887 -16.72255 -16.38113 -15.76094 -15.39971 -14.81024 -14.49207 -14.33758 -14.23622 -13.64085 -13.32978 -13.17546 -12.82495 -12.62658 -12.45221 -12.42887 -12.23997 -11.78451 -11.74403 -11.57890 -11.52179 -11.45174 -11.19704 -10.79406 -10.48757 -9.63715 -8.95806 -8.07566 -6.16032 1.39264 1.41774 1.51287 2.42744 3.20899 3.30853 3.46465 3.62124 3.86886 4.16577 4.37774 4.47450 4.48725 4.56743 4.61283 4.73276 4.75741 4.81696 4.86740 4.93406 5.03740 5.10508 5.20185 5.24175 5.28852 5.37693 5.41543 5.50247 5.68177 5.75719 5.80471 5.85736 6.30809 6.43780 6.52360 6.67289 6.97141 7.51609 8.98461 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.028530 B = 0.010768 C = 0.008631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.183890 B = 2599.694709 C = 3243.349866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.106 4.106 3 C 0.218 3.782 4 H -0.049 1.049 5 C -0.497 4.497 6 H 0.062 0.938 7 C 0.013 3.987 8 N -0.922 5.922 9 Si 0.947 3.053 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.268 1.268 13 N -0.501 5.501 14 C 0.028 3.972 15 C -0.100 4.100 16 C -0.132 4.132 17 H 0.088 0.912 18 C 0.058 3.942 19 N -0.674 5.674 20 C 0.072 3.928 21 C 0.044 3.956 22 H 0.025 0.975 23 H 0.053 0.947 24 H 0.032 0.968 25 H 0.037 0.963 26 H 0.059 0.941 27 H 0.026 0.974 28 H 0.258 0.742 29 H 0.019 0.981 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.339 0.661 36 H 0.052 0.948 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.078 5.204 11.167 12.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.144 4.144 3 C 0.110 3.890 4 H -0.032 1.032 5 C -0.535 4.535 6 H 0.081 0.919 7 C -0.185 4.185 8 N -0.563 5.563 9 Si 0.773 3.227 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.192 1.192 13 N -0.226 5.226 14 C -0.100 4.100 15 C -0.138 4.138 16 C -0.153 4.153 17 H 0.106 0.894 18 C -0.072 4.072 19 N -0.300 5.300 20 C -0.058 4.058 21 C -0.067 4.067 22 H 0.043 0.957 23 H 0.072 0.928 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.037 0.963 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.154 0.846 36 H 0.071 0.929 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.327 5.306 11.039 12.467 hybrid contribution 1.984 -0.483 -1.547 2.562 sum -0.343 4.822 9.492 10.652 Atomic orbital electron populations 1.21301 0.95611 0.98609 1.00845 1.21411 0.96568 0.97424 0.99037 1.19191 0.90011 0.92010 0.87784 1.03194 1.21323 1.30235 1.11687 0.90303 0.91946 1.25597 0.95694 0.95790 1.01442 1.70021 1.38832 1.24409 1.23008 0.85716 0.78986 0.78337 0.79623 1.20579 1.21240 1.19200 1.65186 1.54245 1.01438 1.01712 1.23506 0.97553 0.97951 0.90949 1.22483 1.02316 0.92589 0.96439 1.23350 1.00420 0.98076 0.93425 0.89394 1.23097 0.98275 0.93634 0.92163 1.63354 1.46350 1.17348 1.02973 1.22769 0.98849 0.89627 0.94602 1.23550 0.95485 0.92150 0.95525 0.95657 0.92791 0.94911 0.94377 0.92273 0.95575 0.93292 0.96255 0.90500 0.89374 0.89889 0.90143 0.88733 0.84554 0.92892 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.65 9.47 71.98 0.68 -3.97 16 2 C -0.11 -5.12 5.17 30.59 0.16 -4.97 16 3 C 0.22 10.98 1.52 44.17 0.07 11.05 16 4 H -0.05 -2.87 7.98 -2.39 -0.02 -2.89 16 5 C -0.50 -26.79 6.94 25.60 0.18 -26.61 16 6 H 0.06 3.35 5.84 -2.91 -0.02 3.33 16 7 C 0.01 0.71 5.30 84.66 0.45 1.15 16 8 N -0.92 -53.42 11.33 21.45 0.24 -53.17 16 9 Si 0.95 44.10 29.54 68.60 2.03 46.12 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 N -0.50 -20.85 3.80 -829.07 -3.15 -24.00 16 14 C 0.03 0.98 5.33 86.37 0.46 1.44 16 15 C -0.10 -2.62 6.61 31.73 0.21 -2.41 16 16 C -0.13 -3.67 4.02 -9.21 -0.04 -3.71 16 17 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 18 C 0.06 1.40 7.01 86.40 0.61 2.00 16 19 N -0.67 -19.30 7.62 -501.26 -3.82 -23.12 16 20 C 0.07 2.61 5.70 86.47 0.49 3.10 16 21 C 0.04 1.66 3.00 45.88 0.14 1.80 16 22 H 0.03 1.11 7.72 -2.39 -0.02 1.09 16 23 H 0.05 2.24 7.48 -2.39 -0.02 2.23 16 24 H 0.03 1.55 7.38 -2.39 -0.02 1.54 16 25 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.06 3.25 6.10 -2.39 -0.01 3.23 16 27 H 0.03 1.15 6.88 -2.38 -0.02 1.13 16 28 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 29 H 0.02 0.71 8.03 -2.39 -0.02 0.69 16 30 H 0.08 2.58 7.73 -2.38 -0.02 2.56 16 31 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.08 2.03 7.19 -2.38 -0.02 2.01 16 33 H 0.08 1.98 7.19 -2.39 -0.02 1.96 16 34 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.34 8.60 8.92 -89.69 -0.80 7.80 16 36 H 0.05 2.07 7.65 -2.39 -0.02 2.06 16 37 H 0.07 2.87 7.97 -2.39 -0.02 2.85 16 Total: -1.00 -59.89 278.61 -1.06 -60.95 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.24 Total: 14.34 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: 3.40 Total: -21.11 kcal Atomic # 7 Polarization: -93.57 SS G_CDS: -6.73 Total: -100.30 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -59.89 -1.06 -60.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307328649.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.865 kcal (2) G-P(sol) polarization free energy of solvation -59.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds