Wall clock time and date at job start Mon Mar 30 2020 03:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.28578 * 2 1 4 4 C 1.54372 * 110.32406 * 122.23827 * 2 1 3 5 5 N 1.48563 * 104.59355 * 142.74635 * 4 2 1 6 6 C 1.46907 * 110.99927 * 200.95929 * 5 4 2 7 7 C 1.52988 * 117.49983 * 257.57502 * 6 5 4 8 8 C 1.52997 * 117.49814 * 188.91507 * 6 5 4 9 9 C 1.48555 * 104.22341 * 320.51735 * 5 4 2 10 10 C 1.54262 * 110.32203 * 237.87840 * 2 1 3 11 11 H 1.09004 * 110.32270 * 0.09890 * 10 2 1 12 12 N 1.46896 * 110.32718 * 122.20732 * 10 2 1 13 13 C 1.46899 * 111.00311 * 205.00045 * 12 10 2 14 14 C 1.50695 * 109.47120 * 180.02562 * 13 12 10 15 15 H 1.07992 * 120.00349 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99753 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99757 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00086 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47634 * 89.99851 * 18 16 14 20 20 H 1.48505 * 109.47066 * 209.99853 * 18 16 14 21 21 H 1.48503 * 109.47074 * 329.99570 * 18 16 14 22 22 H 1.08994 * 109.47157 * 182.12535 * 1 2 3 23 23 H 1.08997 * 109.46993 * 302.12553 * 1 2 3 24 24 H 1.09005 * 109.46903 * 62.12266 * 1 2 3 25 25 H 1.08995 * 110.41234 * 261.52704 * 4 2 1 26 26 H 1.09008 * 110.41030 * 23.85204 * 4 2 1 27 27 H 1.09007 * 115.54557 * 43.24981 * 6 5 4 28 28 H 1.09004 * 117.50300 * 359.97438 * 7 6 5 29 29 H 1.08998 * 117.50178 * 145.01936 * 7 6 5 30 30 H 1.09000 * 117.49891 * 214.98823 * 8 6 5 31 31 H 1.09006 * 117.49731 * 359.97390 * 8 6 5 32 32 H 1.09004 * 110.41280 * 280.70504 * 9 5 4 33 33 H 1.08998 * 110.41576 * 158.26055 * 9 5 4 34 34 H 1.00900 * 111.00228 * 81.04104 * 12 10 2 35 35 H 1.08998 * 109.47202 * 59.99798 * 13 12 10 36 36 H 1.09002 * 109.46964 * 300.00252 * 13 12 10 37 37 H 0.97002 * 119.99702 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0662 -0.7722 1.2244 5 7 3.2693 -1.4836 0.7209 6 6 3.6068 -2.6233 1.5842 7 6 4.7693 -2.4481 2.5632 8 6 4.9365 -3.3350 1.3269 9 6 2.8806 -1.9415 -0.6378 10 6 2.0658 -0.7692 -1.2252 11 1 1.2387 -1.1452 -1.8274 12 7 2.9315 0.0991 -2.0342 13 6 2.9709 -0.3517 -3.4318 14 6 3.8671 0.5607 -4.2288 15 1 4.3580 1.3924 -3.7457 16 6 4.0604 0.3335 -5.5750 17 7 4.8421 1.1300 -6.2707 18 14 3.2107 -1.1048 -6.4109 19 1 1.8895 -0.6668 -6.9280 20 1 4.0483 -1.5873 -7.5383 21 1 3.0191 -2.2040 -5.4309 22 1 -0.3633 -1.0269 0.0381 23 1 -0.3633 0.5465 0.8703 24 1 -0.3633 0.4805 -0.9085 25 1 2.3394 -0.0799 2.0207 26 1 1.3220 -1.4849 1.5801 27 1 2.7636 -3.2337 1.9079 28 1 5.2841 -1.4873 2.5665 29 1 4.6913 -2.9434 3.5310 30 1 4.9683 -4.4135 1.4817 31 1 5.5607 -2.9578 0.5167 32 1 2.2647 -2.8387 -0.5749 33 1 3.7669 -2.1296 -1.2437 34 1 3.8606 0.1483 -1.6438 35 1 1.9644 -0.3287 -3.8495 36 1 3.3587 -1.3695 -3.4744 37 1 4.9784 0.9700 -7.2176 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379668695.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:21 Heat of formation + Delta-G solvation = 29.656807 kcal Electronic energy + Delta-G solvation = -15698.678379 eV Core-core repulsion = 13283.425329 eV Total energy + Delta-G solvation = -2415.253050 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.41128 -36.66917 -34.17166 -32.13787 -31.65415 -28.46671 -26.23583 -25.11874 -22.40563 -22.03567 -21.04217 -20.30895 -19.50131 -16.88699 -16.38497 -15.48295 -15.06130 -14.58257 -14.05075 -13.77316 -13.30832 -13.09342 -12.71474 -12.56272 -12.28800 -12.12040 -11.82582 -11.53317 -11.38195 -11.04795 -10.81413 -10.67077 -10.46105 -10.35850 -10.27478 -9.99116 -9.73790 -9.24828 -8.56862 -8.43181 -7.39214 -6.03327 -4.00801 3.29787 3.36851 3.38998 3.71649 3.91583 4.43776 4.77272 4.82702 4.88427 4.93718 5.13843 5.27506 5.31705 5.33397 5.48488 5.60034 5.60280 5.66298 5.75542 5.80613 5.82979 5.96541 6.03044 6.05437 6.15460 6.30180 6.38839 6.57062 6.81509 6.90136 7.07154 7.17486 7.64859 7.97484 8.42855 8.69344 9.05819 9.58869 11.10110 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.028173 B = 0.006901 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.614379 B = 4056.464970 C = 4554.856950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.093 0.907 4 C 0.041 3.959 5 N -0.479 5.479 6 C -0.008 4.008 7 C -0.163 4.163 8 C -0.170 4.170 9 C 0.007 3.993 10 C 0.087 3.913 11 H 0.076 0.924 12 N -0.668 5.668 13 C 0.163 3.837 14 C -0.514 4.514 15 H 0.079 0.921 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.877 3.123 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.268 1.268 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.038 0.962 33 H 0.082 0.918 34 H 0.343 0.657 35 H 0.020 0.980 36 H -0.017 1.017 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.565 -8.261 15.962 18.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 H 0.111 0.889 4 C -0.087 4.087 5 N -0.203 5.203 6 C -0.117 4.117 7 C -0.200 4.200 8 C -0.207 4.207 9 C -0.122 4.122 10 C -0.026 4.026 11 H 0.095 0.905 12 N -0.298 5.298 13 C 0.036 3.964 14 C -0.552 4.552 15 H 0.097 0.903 16 C -0.134 4.134 17 N -0.540 5.540 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.193 1.193 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.096 0.904 26 H 0.058 0.942 27 H 0.100 0.900 28 H 0.119 0.881 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.162 0.838 35 H 0.038 0.962 36 H 0.000 1.000 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.501 -7.414 15.632 18.154 hybrid contribution -0.554 -2.197 -0.484 2.317 sum -6.054 -9.611 15.148 18.934 Atomic orbital electron populations 1.21803 0.95007 1.01037 1.01885 1.22000 0.94930 1.01002 0.93072 0.88888 1.23170 0.90647 0.97029 0.97806 1.65185 1.33514 1.20175 1.01419 1.22584 0.92196 0.95942 1.01014 1.22991 1.01577 1.01865 0.93584 1.22996 0.99259 0.97880 1.00605 1.23877 0.99888 0.97821 0.90599 1.22411 0.95938 0.90376 0.93841 0.90548 1.60544 1.16056 1.50100 1.03070 1.20026 0.96702 0.94169 0.85546 1.21074 1.27250 1.13318 0.93570 0.90283 1.24909 0.95008 0.96176 0.97258 1.69907 1.37991 1.38029 1.08079 0.86833 0.79839 0.83502 0.79387 1.20191 1.21254 1.19300 0.93403 0.92909 0.91989 0.90449 0.94229 0.90015 0.88098 0.89097 0.88995 0.88098 0.94317 0.89962 0.83836 0.96212 0.99960 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.92 37.16 0.33 -1.37 16 2 C -0.09 -1.29 3.44 -89.24 -0.31 -1.60 16 3 H 0.09 1.47 7.95 -51.93 -0.41 1.05 16 4 C 0.04 0.53 6.04 -2.18 -0.01 0.52 16 5 N -0.48 -6.81 5.52 -222.02 -1.22 -8.04 16 6 C -0.01 -0.10 4.90 -67.72 -0.33 -0.43 16 7 C -0.16 -1.74 10.46 -26.70 -0.28 -2.02 16 8 C -0.17 -1.93 10.33 -26.70 -0.28 -2.21 16 9 C 0.01 0.12 5.83 -2.18 -0.01 0.10 16 10 C 0.09 1.47 3.03 -66.33 -0.20 1.27 16 11 H 0.08 1.32 7.38 -51.93 -0.38 0.94 16 12 N -0.67 -14.02 6.16 -106.53 -0.66 -14.68 16 13 C 0.16 4.00 4.36 -4.98 -0.02 3.98 16 14 C -0.51 -14.90 9.87 -34.44 -0.34 -15.24 16 15 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 16 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 17 N -0.90 -28.01 13.96 55.43 0.77 -27.23 16 18 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 22 H 0.05 0.54 8.10 -51.93 -0.42 0.12 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.04 0.47 7.59 -51.92 -0.39 0.08 16 27 H 0.08 0.94 8.01 -51.92 -0.42 0.52 16 28 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.04 0.57 8.00 -51.93 -0.42 0.15 16 33 H 0.08 1.43 7.98 -51.93 -0.41 1.02 16 34 H 0.34 7.29 8.41 -39.29 -0.33 6.96 16 35 H 0.02 0.49 7.50 -51.93 -0.39 0.10 16 36 H -0.02 -0.42 7.17 -51.93 -0.37 -0.80 16 37 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 297.95 15.07 4.49 4.49 Total: -1.00 -30.13 297.95 -9.33 -39.46 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.50 Total: 3.95 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -1.55 Total: -15.08 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -1.11 Total: -49.95 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.13 -9.33 -39.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379668695.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.119 kcal (2) G-P(sol) polarization free energy of solvation -30.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds