Wall clock time and date at job start Mon Mar 30 2020 03:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.28578 * 2 1 4 4 C 1.54372 * 110.32406 * 122.23827 * 2 1 3 5 5 N 1.48563 * 104.59355 * 142.74635 * 4 2 1 6 6 C 1.46907 * 110.99927 * 200.95929 * 5 4 2 7 7 C 1.52988 * 117.49983 * 257.57502 * 6 5 4 8 8 C 1.52997 * 117.49814 * 188.91507 * 6 5 4 9 9 C 1.48555 * 104.22341 * 320.51735 * 5 4 2 10 10 C 1.54262 * 110.32203 * 237.87840 * 2 1 3 11 11 H 1.09004 * 110.32270 * 0.09890 * 10 2 1 12 12 N 1.46896 * 110.32718 * 122.20732 * 10 2 1 13 13 C 1.46899 * 111.00311 * 205.00045 * 12 10 2 14 14 C 1.50695 * 109.47120 * 180.02562 * 13 12 10 15 15 H 1.07992 * 120.00349 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99753 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99757 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00086 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47634 * 89.99851 * 18 16 14 20 20 H 1.48505 * 109.47066 * 209.99853 * 18 16 14 21 21 H 1.48503 * 109.47074 * 329.99570 * 18 16 14 22 22 H 1.08994 * 109.47157 * 182.12535 * 1 2 3 23 23 H 1.08997 * 109.46993 * 302.12553 * 1 2 3 24 24 H 1.09005 * 109.46903 * 62.12266 * 1 2 3 25 25 H 1.08995 * 110.41234 * 261.52704 * 4 2 1 26 26 H 1.09008 * 110.41030 * 23.85204 * 4 2 1 27 27 H 1.09007 * 115.54557 * 43.24981 * 6 5 4 28 28 H 1.09004 * 117.50300 * 359.97438 * 7 6 5 29 29 H 1.08998 * 117.50178 * 145.01936 * 7 6 5 30 30 H 1.09000 * 117.49891 * 214.98823 * 8 6 5 31 31 H 1.09006 * 117.49731 * 359.97390 * 8 6 5 32 32 H 1.09004 * 110.41280 * 280.70504 * 9 5 4 33 33 H 1.08998 * 110.41576 * 158.26055 * 9 5 4 34 34 H 1.00900 * 111.00228 * 81.04104 * 12 10 2 35 35 H 1.08998 * 109.47202 * 59.99798 * 13 12 10 36 36 H 1.09002 * 109.46964 * 300.00252 * 13 12 10 37 37 H 0.97002 * 119.99702 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0662 -0.7722 1.2244 5 7 3.2693 -1.4836 0.7209 6 6 3.6068 -2.6233 1.5842 7 6 4.7693 -2.4481 2.5632 8 6 4.9365 -3.3350 1.3269 9 6 2.8806 -1.9415 -0.6378 10 6 2.0658 -0.7692 -1.2252 11 1 1.2387 -1.1452 -1.8274 12 7 2.9315 0.0991 -2.0342 13 6 2.9709 -0.3517 -3.4318 14 6 3.8671 0.5607 -4.2288 15 1 4.3580 1.3924 -3.7457 16 6 4.0604 0.3335 -5.5750 17 7 4.8421 1.1300 -6.2707 18 14 3.2107 -1.1048 -6.4109 19 1 1.8895 -0.6668 -6.9280 20 1 4.0483 -1.5873 -7.5383 21 1 3.0191 -2.2040 -5.4309 22 1 -0.3633 -1.0269 0.0381 23 1 -0.3633 0.5465 0.8703 24 1 -0.3633 0.4805 -0.9085 25 1 2.3394 -0.0799 2.0207 26 1 1.3220 -1.4849 1.5801 27 1 2.7636 -3.2337 1.9079 28 1 5.2841 -1.4873 2.5665 29 1 4.6913 -2.9434 3.5310 30 1 4.9683 -4.4135 1.4817 31 1 5.5607 -2.9578 0.5167 32 1 2.2647 -2.8387 -0.5749 33 1 3.7669 -2.1296 -1.2437 34 1 3.8606 0.1483 -1.6438 35 1 1.9644 -0.3287 -3.8495 36 1 3.3587 -1.3695 -3.4744 37 1 4.9784 0.9700 -7.2176 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379668695.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:21 Heat of formation + Delta-G solvation = 7.955122 kcal Electronic energy + Delta-G solvation = -15699.619435 eV Core-core repulsion = 13283.425329 eV Total energy + Delta-G solvation = -2416.194106 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.56638 -37.76875 -35.86798 -34.17213 -32.73302 -30.16131 -27.73809 -26.35328 -23.66867 -23.21311 -22.60287 -21.40733 -20.73762 -18.94336 -17.53106 -16.80327 -16.47315 -16.07257 -15.49762 -15.36355 -14.74707 -14.35754 -14.14004 -13.89764 -13.63735 -13.46051 -13.25121 -12.96523 -12.59596 -12.38884 -12.27038 -12.05186 -11.82517 -11.69360 -11.68368 -11.34308 -11.28031 -10.94764 -10.81139 -9.48654 -9.07093 -8.30620 -6.35054 1.33605 1.35407 1.46414 2.33237 2.79279 2.92902 3.03309 3.43838 3.66684 3.86634 3.99855 4.11379 4.16778 4.27916 4.39927 4.44673 4.56803 4.64561 4.77223 4.77967 4.78822 4.82375 4.86677 4.88859 5.07016 5.10846 5.23505 5.30056 5.32397 5.44107 5.52386 5.75100 6.03270 6.17536 6.58162 6.68156 6.77518 7.29914 8.86392 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.028173 B = 0.006901 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.614379 B = 4056.464970 C = 4554.856950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.086 4.086 3 H 0.073 0.927 4 C 0.048 3.952 5 N -0.496 5.496 6 C -0.020 4.020 7 C -0.150 4.150 8 C -0.174 4.174 9 C 0.017 3.983 10 C 0.081 3.919 11 H 0.076 0.924 12 N -0.676 5.676 13 C 0.177 3.823 14 C -0.528 4.528 15 H 0.034 0.966 16 C 0.008 3.992 17 N -0.948 5.948 18 Si 0.952 3.048 19 H -0.264 1.264 20 H -0.280 1.280 21 H -0.251 1.251 22 H 0.060 0.940 23 H 0.072 0.928 24 H 0.049 0.951 25 H 0.085 0.915 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.337 0.663 35 H 0.023 0.977 36 H -0.015 1.015 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.266 -10.404 17.374 21.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.106 4.106 3 H 0.091 0.909 4 C -0.079 4.079 5 N -0.220 5.220 6 C -0.129 4.129 7 C -0.188 4.188 8 C -0.211 4.211 9 C -0.113 4.113 10 C -0.030 4.030 11 H 0.094 0.906 12 N -0.305 5.305 13 C 0.049 3.951 14 C -0.566 4.566 15 H 0.053 0.947 16 C -0.190 4.190 17 N -0.589 5.589 18 Si 0.775 3.225 19 H -0.189 1.189 20 H -0.206 1.206 21 H -0.175 1.175 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.068 0.932 25 H 0.104 0.896 26 H 0.077 0.923 27 H 0.115 0.885 28 H 0.108 0.892 29 H 0.134 0.866 30 H 0.130 0.870 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.155 0.845 35 H 0.041 0.959 36 H 0.002 0.998 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.213 -9.555 17.077 20.855 hybrid contribution 0.044 -1.440 -0.852 1.674 sum -7.169 -10.994 16.225 20.869 Atomic orbital electron populations 1.21759 0.93042 1.02106 1.02251 1.21944 0.96500 0.99698 0.92460 0.90852 1.23150 0.90521 0.97200 0.97034 1.65142 1.34325 1.21397 1.01167 1.22715 0.92981 0.95757 1.01425 1.23043 1.00029 1.01340 0.94342 1.23021 0.98559 0.99072 1.00490 1.23640 0.98710 0.97633 0.91281 1.22548 0.95235 0.90915 0.94321 0.90617 1.60488 1.16274 1.51700 1.02066 1.19748 0.95411 0.92948 0.87034 1.21348 1.27894 1.12977 0.94422 0.94719 1.25898 0.95668 0.99454 0.97966 1.70063 1.39740 1.40351 1.08699 0.85647 0.78824 0.79681 0.78358 1.18917 1.20557 1.17483 0.92077 0.90883 0.93203 0.89650 0.92324 0.88517 0.89248 0.86555 0.87046 0.90223 0.92857 0.92345 0.84476 0.95907 0.99786 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.92 71.98 0.64 -2.29 16 2 C -0.09 -2.34 3.44 -9.90 -0.03 -2.38 16 3 H 0.07 2.29 7.95 -2.39 -0.02 2.27 16 4 C 0.05 1.13 6.04 86.45 0.52 1.65 16 5 N -0.50 -13.35 5.52 -856.35 -4.72 -18.07 16 6 C -0.02 -0.44 4.90 44.91 0.22 -0.22 16 7 C -0.15 -2.86 10.46 30.61 0.32 -2.54 16 8 C -0.17 -3.66 10.33 30.62 0.32 -3.34 16 9 C 0.02 0.51 5.83 86.45 0.50 1.01 16 10 C 0.08 2.68 3.03 45.81 0.14 2.82 16 11 H 0.08 2.50 7.38 -2.38 -0.02 2.49 16 12 N -0.68 -28.81 6.16 -490.96 -3.02 -31.83 16 13 C 0.18 8.72 4.36 85.56 0.37 9.09 16 14 C -0.53 -31.59 9.87 25.60 0.25 -31.34 16 15 H 0.03 2.31 8.06 -2.91 -0.02 2.29 16 16 C 0.01 0.45 5.47 84.66 0.46 0.91 16 17 N -0.95 -60.45 13.96 21.45 0.30 -60.15 16 18 Si 0.95 44.81 27.47 68.60 1.88 46.70 16 19 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 21 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 22 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 23 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 25 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.06 1.17 7.59 -2.38 -0.02 1.15 16 27 H 0.10 1.86 8.01 -2.38 -0.02 1.85 16 28 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.05 1.44 8.00 -2.39 -0.02 1.42 16 33 H 0.06 2.03 7.98 -2.39 -0.02 2.01 16 34 H 0.34 14.88 8.41 -89.69 -0.75 14.12 16 35 H 0.02 1.11 7.50 -2.39 -0.02 1.10 16 36 H -0.02 -0.75 7.17 -2.39 -0.02 -0.77 16 37 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -66.23 297.95 -1.63 -67.86 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.21 Total: 22.13 kcal Atomic # 6 Polarization: -30.34 SS G_CDS: 3.72 Total: -26.63 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -7.45 Total: -110.06 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.70 kcal Total: -66.23 -1.63 -67.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379668695.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.812 kcal (2) G-P(sol) polarization free energy of solvation -66.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds