Wall clock time and date at job start Mon Mar 30 2020 02:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99571 * 2 1 4 4 H 1.48495 * 109.47345 * 269.99790 * 3 2 1 5 5 H 1.48499 * 109.47384 * 30.00728 * 3 2 1 6 6 H 1.48508 * 109.46699 * 150.00210 * 3 2 1 7 7 C 1.37878 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99598 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99785 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46615 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47169 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47310 * 180.02562 * 11 10 9 13 13 C 1.46950 * 110.99671 * 293.12091 * 12 11 10 14 14 C 1.53316 * 110.44525 * 181.45226 * 13 12 11 15 15 N 1.47904 * 108.89014 * 54.23584 * 14 13 12 16 16 C 1.48367 * 108.42931 * 48.29020 * 15 14 13 17 17 C 1.54079 * 106.57225 * 273.65239 * 16 15 14 18 18 C 1.47856 * 110.99854 * 170.00090 * 12 11 10 19 19 H 1.09004 * 113.68783 * 313.20505 * 18 12 11 20 20 C 1.48945 * 107.56080 * 295.28975 * 15 14 13 21 21 H 0.97003 * 120.00039 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47191 * 60.00053 * 9 7 2 23 23 H 1.08993 * 109.47312 * 299.99663 * 9 7 2 24 24 H 1.08996 * 109.47158 * 60.00204 * 10 9 7 25 25 H 1.09001 * 109.47277 * 299.99607 * 10 9 7 26 26 H 1.09007 * 109.46902 * 59.99516 * 11 10 9 27 27 H 1.09006 * 109.46908 * 300.00225 * 11 10 9 28 28 H 1.09007 * 109.33497 * 301.53557 * 13 12 11 29 29 H 1.08997 * 109.33591 * 61.04229 * 13 12 11 30 30 H 1.09005 * 109.43107 * 294.49997 * 14 13 12 31 31 H 1.09008 * 109.71911 * 174.14513 * 14 13 12 32 32 H 1.08999 * 110.03827 * 154.37708 * 16 15 14 33 33 H 1.08996 * 110.07619 * 32.95286 * 16 15 14 34 34 H 1.09002 * 110.38122 * 117.15476 * 17 16 15 35 35 H 1.09002 * 110.38143 * 239.39870 * 17 16 15 36 36 H 1.08995 * 110.97989 * 189.95988 * 20 15 14 37 37 H 1.09003 * 110.97261 * 313.70054 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5516 -2.6364 -0.0009 12 7 6.0413 -4.0214 -0.0014 13 6 5.7089 -4.6979 1.2600 14 6 6.2568 -6.1298 1.2604 15 7 7.7058 -6.0881 0.9667 16 6 8.3315 -5.0623 1.8370 17 6 8.1939 -3.7167 1.0991 18 6 7.4996 -4.0677 -0.2411 19 1 7.8271 -3.4413 -1.0709 20 6 7.8686 -5.5674 -0.4192 21 1 -0.4850 0.8401 0.0004 22 1 3.8752 -0.6803 0.8888 23 1 3.8745 -0.6799 -0.8911 24 1 3.6579 -3.1504 -0.8907 25 1 3.6587 -3.1501 0.8893 26 1 5.9149 -2.1224 0.8890 27 1 5.9150 -2.1226 -0.8910 28 1 6.1486 -4.1471 2.0917 29 1 4.6259 -4.7249 1.3806 30 1 5.7458 -6.7138 0.4948 31 1 6.0953 -6.5851 2.2376 32 1 9.3845 -5.2968 1.9930 33 1 7.8132 -5.0177 2.7949 34 1 7.5776 -3.0281 1.6771 35 1 9.1766 -3.2825 0.9152 36 1 8.8986 -5.6766 -0.7586 37 1 7.1796 -6.0608 -1.1048 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381699907.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:02 Heat of formation + Delta-G solvation = 15.695476 kcal Electronic energy + Delta-G solvation = -15926.311183 eV Core-core repulsion = 13510.452724 eV Total energy + Delta-G solvation = -2415.858459 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.98520 -35.76137 -33.28253 -31.92389 -31.31204 -29.24996 -27.63100 -25.19915 -23.67848 -22.09390 -20.82206 -19.97338 -19.37841 -16.80743 -16.59657 -15.85706 -14.82040 -14.68297 -14.39875 -14.22409 -13.54651 -13.20185 -12.85253 -12.61895 -12.34523 -11.99959 -11.73221 -11.62792 -11.39250 -11.19814 -11.10555 -10.82334 -10.80175 -10.63826 -9.91342 -9.68444 -9.62688 -9.18840 -8.70404 -8.53317 -8.11458 -6.03799 -4.01553 3.30068 3.37253 3.40673 3.80204 4.01600 4.45159 4.58050 4.76030 4.85442 5.04143 5.12451 5.18034 5.29116 5.31092 5.41315 5.51019 5.60574 5.70162 5.73242 5.77081 5.86080 5.89215 5.91267 6.08023 6.15474 6.50973 6.54530 6.64628 6.78000 6.90207 7.17590 7.22158 7.34361 7.45939 7.80600 8.55453 9.01711 9.58845 11.09812 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.053279 B = 0.005637 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.411492 B = 4965.757230 C = 5195.942308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.096 4.096 11 C 0.053 3.947 12 N -0.526 5.526 13 C 0.014 3.986 14 C 0.034 3.966 15 N -0.497 5.497 16 C 0.027 3.973 17 C -0.185 4.185 18 C 0.043 3.957 19 H 0.103 0.897 20 C 0.035 3.965 21 H 0.263 0.737 22 H 0.012 0.988 23 H 0.011 0.989 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.028 0.972 27 H 0.069 0.931 28 H 0.039 0.961 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.354 -9.205 1.953 19.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.134 4.134 11 C -0.074 4.074 12 N -0.249 5.249 13 C -0.115 4.115 14 C -0.095 4.095 15 N -0.218 5.218 16 C -0.101 4.101 17 C -0.225 4.225 18 C -0.067 4.067 19 H 0.121 0.879 20 C -0.094 4.094 21 H 0.072 0.928 22 H 0.030 0.970 23 H 0.029 0.971 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.046 0.954 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 17.200 -9.949 1.670 19.940 hybrid contribution 0.308 2.382 0.616 2.480 sum 17.508 -7.567 2.286 19.210 Atomic orbital electron populations 1.69919 1.06290 1.26834 1.51322 1.25039 0.94725 0.99144 0.94634 0.86772 0.80285 0.83673 0.78490 1.20274 1.21402 1.19171 1.21143 0.89493 0.94455 1.50558 0.91034 1.19547 0.97194 0.92323 0.96008 1.21461 0.90881 0.99508 1.01560 1.22346 0.98041 0.86995 1.00054 1.62684 1.11586 1.17224 1.33434 1.22873 1.02399 0.95322 0.90886 1.22768 0.88546 0.95689 1.02452 1.66785 1.10966 1.40740 1.03340 1.23098 1.00485 0.89548 0.96999 1.23518 1.01661 0.98821 0.98526 1.23795 0.88147 0.98188 0.96546 0.87872 1.23640 1.01699 0.92537 0.91538 0.92766 0.96980 0.97111 0.91991 0.92970 0.95415 0.91230 0.94335 0.89432 0.89832 0.90147 0.90396 0.91149 0.91016 0.91164 0.89952 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.26 13.96 55.43 0.77 -27.48 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 10 C -0.10 -1.94 5.09 -26.73 -0.14 -2.07 16 11 C 0.05 0.87 4.69 -3.82 -0.02 0.85 16 12 N -0.53 -7.56 4.67 -222.84 -1.04 -8.60 16 13 C 0.01 0.19 4.75 -3.63 -0.02 0.18 16 14 C 0.03 0.40 5.96 -3.11 -0.02 0.38 16 15 N -0.50 -5.72 6.16 -228.21 -1.41 -7.12 16 16 C 0.03 0.29 6.21 -2.45 -0.02 0.27 16 17 C -0.18 -2.04 5.80 -25.13 -0.15 -2.19 16 18 C 0.04 0.52 3.92 -64.83 -0.25 0.27 16 19 H 0.10 1.17 8.07 -51.93 -0.42 0.75 16 20 C 0.03 0.38 6.52 -1.37 -0.01 0.37 16 21 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 22 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 23 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 24 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 25 H 0.05 1.06 6.60 -51.93 -0.34 0.71 16 26 H 0.03 0.46 7.04 -51.93 -0.37 0.09 16 27 H 0.07 1.12 8.02 -51.93 -0.42 0.71 16 28 H 0.04 0.52 5.23 -51.93 -0.27 0.25 16 29 H 0.09 1.28 6.54 -51.93 -0.34 0.94 16 30 H 0.08 0.99 7.91 -51.93 -0.41 0.58 16 31 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.74 7.08 -51.93 -0.37 0.37 16 34 H 0.07 0.90 5.67 -51.93 -0.29 0.60 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 1.03 7.86 -51.93 -0.41 0.62 16 LS Contribution 276.91 15.07 4.17 4.17 Total: -1.00 -30.54 276.91 -9.43 -39.97 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -6.10 Total: -2.36 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -1.16 Total: -15.89 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: -1.67 Total: -43.20 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.54 -9.43 -39.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381699907.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.662 kcal (2) G-P(sol) polarization free energy of solvation -30.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds