Wall clock time and date at job start Mon Mar 30 2020 02:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99571 * 2 1 4 4 H 1.48495 * 109.47345 * 269.99790 * 3 2 1 5 5 H 1.48499 * 109.47384 * 30.00728 * 3 2 1 6 6 H 1.48508 * 109.46699 * 150.00210 * 3 2 1 7 7 C 1.37878 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99598 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99785 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46615 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47169 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47310 * 180.02562 * 11 10 9 13 13 C 1.46950 * 110.99671 * 293.12091 * 12 11 10 14 14 C 1.53316 * 110.44525 * 181.45226 * 13 12 11 15 15 N 1.47904 * 108.89014 * 54.23584 * 14 13 12 16 16 C 1.48367 * 108.42931 * 48.29020 * 15 14 13 17 17 C 1.54079 * 106.57225 * 273.65239 * 16 15 14 18 18 C 1.47856 * 110.99854 * 170.00090 * 12 11 10 19 19 H 1.09004 * 113.68783 * 313.20505 * 18 12 11 20 20 C 1.48945 * 107.56080 * 295.28975 * 15 14 13 21 21 H 0.97003 * 120.00039 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47191 * 60.00053 * 9 7 2 23 23 H 1.08993 * 109.47312 * 299.99663 * 9 7 2 24 24 H 1.08996 * 109.47158 * 60.00204 * 10 9 7 25 25 H 1.09001 * 109.47277 * 299.99607 * 10 9 7 26 26 H 1.09007 * 109.46902 * 59.99516 * 11 10 9 27 27 H 1.09006 * 109.46908 * 300.00225 * 11 10 9 28 28 H 1.09007 * 109.33497 * 301.53557 * 13 12 11 29 29 H 1.08997 * 109.33591 * 61.04229 * 13 12 11 30 30 H 1.09005 * 109.43107 * 294.49997 * 14 13 12 31 31 H 1.09008 * 109.71911 * 174.14513 * 14 13 12 32 32 H 1.08999 * 110.03827 * 154.37708 * 16 15 14 33 33 H 1.08996 * 110.07619 * 32.95286 * 16 15 14 34 34 H 1.09002 * 110.38122 * 117.15476 * 17 16 15 35 35 H 1.09002 * 110.38143 * 239.39870 * 17 16 15 36 36 H 1.08995 * 110.97989 * 189.95988 * 20 15 14 37 37 H 1.09003 * 110.97261 * 313.70054 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5516 -2.6364 -0.0009 12 7 6.0413 -4.0214 -0.0014 13 6 5.7089 -4.6979 1.2600 14 6 6.2568 -6.1298 1.2604 15 7 7.7058 -6.0881 0.9667 16 6 8.3315 -5.0623 1.8370 17 6 8.1939 -3.7167 1.0991 18 6 7.4996 -4.0677 -0.2411 19 1 7.8271 -3.4413 -1.0709 20 6 7.8686 -5.5674 -0.4192 21 1 -0.4850 0.8401 0.0004 22 1 3.8752 -0.6803 0.8888 23 1 3.8745 -0.6799 -0.8911 24 1 3.6579 -3.1504 -0.8907 25 1 3.6587 -3.1501 0.8893 26 1 5.9149 -2.1224 0.8890 27 1 5.9150 -2.1226 -0.8910 28 1 6.1486 -4.1471 2.0917 29 1 4.6259 -4.7249 1.3806 30 1 5.7458 -6.7138 0.4948 31 1 6.0953 -6.5851 2.2376 32 1 9.3845 -5.2968 1.9930 33 1 7.8132 -5.0177 2.7949 34 1 7.5776 -3.0281 1.6771 35 1 9.1766 -3.2825 0.9152 36 1 8.8986 -5.6766 -0.7586 37 1 7.1796 -6.0608 -1.1048 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381699907.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:02 Heat of formation + Delta-G solvation = -6.948555 kcal Electronic energy + Delta-G solvation = -15927.293102 eV Core-core repulsion = 13510.452724 eV Total energy + Delta-G solvation = -2416.840378 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.94330 -37.13640 -35.16840 -33.23016 -32.79782 -30.11619 -29.21956 -26.60534 -24.70626 -23.70501 -21.72278 -21.64867 -20.36805 -18.92346 -17.65512 -16.91692 -16.27923 -16.18860 -15.58169 -15.51816 -14.87957 -14.57945 -14.39500 -13.85241 -13.68131 -13.41093 -13.13233 -12.88403 -12.60181 -12.48224 -12.29892 -12.16728 -11.87845 -11.73505 -11.72497 -11.48784 -11.37685 -11.25842 -10.78283 -9.67361 -9.19709 -8.31352 -6.36004 1.34062 1.36090 1.48068 2.34504 2.76500 3.03758 3.09547 3.68643 3.86177 3.95131 4.05489 4.08872 4.19492 4.26927 4.31974 4.49463 4.55390 4.61761 4.66930 4.78786 4.85560 4.88937 4.90427 4.95492 5.00673 5.02998 5.06291 5.16857 5.47917 5.56242 5.63909 5.75730 5.88455 6.06001 6.11837 6.27811 6.72151 7.28696 8.85796 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.053279 B = 0.005637 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.411492 B = 4965.757230 C = 5195.942308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.954 3.046 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.247 1.247 7 C -0.535 4.535 8 H 0.028 0.972 9 C -0.009 4.009 10 C -0.086 4.086 11 C 0.066 3.934 12 N -0.536 5.536 13 C 0.016 3.984 14 C 0.040 3.960 15 N -0.502 5.502 16 C 0.028 3.972 17 C -0.179 4.179 18 C 0.040 3.960 19 H 0.113 0.887 20 C 0.038 3.962 21 H 0.267 0.733 22 H 0.017 0.983 23 H 0.020 0.980 24 H 0.047 0.953 25 H 0.042 0.958 26 H 0.030 0.970 27 H 0.077 0.923 28 H 0.039 0.961 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.247 -8.592 1.978 22.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.777 3.223 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.171 1.171 7 C -0.573 4.573 8 H 0.046 0.954 9 C -0.046 4.046 10 C -0.124 4.124 11 C -0.062 4.062 12 N -0.260 5.260 13 C -0.113 4.113 14 C -0.089 4.089 15 N -0.223 5.223 16 C -0.100 4.100 17 C -0.219 4.219 18 C -0.070 4.070 19 H 0.131 0.869 20 C -0.091 4.091 21 H 0.076 0.924 22 H 0.035 0.965 23 H 0.038 0.962 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.121 0.879 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 20.115 -9.362 1.694 22.252 hybrid contribution -0.658 2.088 0.606 2.272 sum 19.458 -7.274 2.301 20.900 Atomic orbital electron populations 1.70079 1.08388 1.28230 1.52652 1.26070 0.95654 1.03682 0.94006 0.85598 0.79396 0.77946 0.79330 1.18932 1.20864 1.17050 1.21500 0.92238 0.93036 1.50494 0.95371 1.19479 0.93825 0.94956 0.96387 1.21264 0.93916 0.96775 1.00459 1.22072 0.94925 0.88623 1.00537 1.62616 1.13697 1.15752 1.33929 1.22857 1.01300 0.96525 0.90628 1.22735 0.88882 0.94286 1.03023 1.66813 1.10404 1.41222 1.03842 1.23144 1.01268 0.88991 0.96639 1.23461 1.02113 0.98792 0.97577 1.23937 0.86313 0.99266 0.97471 0.86919 1.23674 1.02693 0.91513 0.91174 0.92447 0.96454 0.96164 0.93417 0.93892 0.95179 0.90425 0.94289 0.91392 0.90263 0.88981 0.88845 0.91287 0.92542 0.89386 0.87893 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.95 13.96 21.45 0.30 -60.65 16 2 C 0.00 0.14 5.47 84.65 0.46 0.61 16 3 Si 0.95 44.77 27.47 68.60 1.88 46.65 16 4 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 7 C -0.53 -31.79 9.66 25.60 0.25 -31.54 16 8 H 0.03 1.85 7.99 -2.91 -0.02 1.82 16 9 C -0.01 -0.41 4.04 29.85 0.12 -0.29 16 10 C -0.09 -3.48 5.09 30.60 0.16 -3.33 16 11 C 0.07 2.09 4.69 86.31 0.40 2.49 16 12 N -0.54 -14.73 4.67 -858.93 -4.01 -18.74 16 13 C 0.02 0.42 4.75 86.40 0.41 0.83 16 14 C 0.04 0.88 5.96 86.22 0.51 1.39 16 15 N -0.50 -10.36 6.16 -875.92 -5.39 -15.75 16 16 C 0.03 0.51 6.21 86.38 0.54 1.05 16 17 C -0.18 -3.45 5.80 31.63 0.18 -3.27 16 18 C 0.04 0.85 3.92 46.26 0.18 1.03 16 19 H 0.11 2.21 8.07 -2.38 -0.02 2.19 16 20 C 0.04 0.74 6.52 86.76 0.57 1.30 16 21 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 22 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 23 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 24 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.04 1.78 6.60 -2.39 -0.02 1.77 16 26 H 0.03 0.94 7.04 -2.38 -0.02 0.93 16 27 H 0.08 2.33 8.02 -2.38 -0.02 2.31 16 28 H 0.04 1.02 5.23 -2.38 -0.01 1.01 16 29 H 0.07 2.02 6.54 -2.39 -0.02 2.01 16 30 H 0.08 1.81 7.91 -2.38 -0.02 1.79 16 31 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 1.29 7.08 -2.39 -0.02 1.28 16 34 H 0.06 1.28 5.67 -2.39 -0.01 1.27 16 35 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.08 1.73 7.86 -2.39 -0.02 1.71 16 Total: -1.00 -66.18 276.91 -2.46 -68.64 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.97 Total: 9.56 kcal Atomic # 6 Polarization: -33.50 SS G_CDS: 3.78 Total: -29.72 kcal Atomic # 7 Polarization: -86.03 SS G_CDS: -9.10 Total: -95.14 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.65 kcal Total: -66.18 -2.46 -68.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381699907.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.689 kcal (2) G-P(sol) polarization free energy of solvation -66.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds