Wall clock time and date at job start Mon Mar 30 2020 03:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 119.99851 * 2 1 4 4 N 1.46900 * 109.47377 * 125.00062 * 3 2 1 5 5 C 1.46904 * 111.00074 * 169.99553 * 4 3 2 6 6 C 1.53247 * 109.33773 * 172.74760 * 5 4 3 7 7 H 1.08992 * 109.62255 * 173.74172 * 6 5 4 8 8 C 1.52998 * 109.62807 * 294.12385 * 6 5 4 9 9 N 1.47082 * 108.68077 * 53.93079 * 6 5 4 10 10 C 1.36930 * 120.87695 * 128.71741 * 9 6 5 11 11 H 1.07999 * 119.99956 * 209.45152 * 10 9 6 12 12 C 1.38814 * 120.00419 * 29.44789 * 10 9 6 13 13 N 1.31618 * 119.99592 * 13.08371 * 12 10 9 14 14 Si 1.86795 * 120.00135 * 193.07888 * 12 10 9 15 15 H 1.48498 * 109.47342 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.46994 * 120.00124 * 14 12 10 17 17 H 1.48500 * 109.47240 * 240.00221 * 14 12 10 18 18 C 1.47468 * 117.98166 * 308.89811 * 9 6 5 19 19 H 1.08996 * 109.75893 * 291.22678 * 18 9 6 20 20 C 1.53008 * 109.55547 * 170.80877 * 18 9 6 21 21 C 1.46906 * 110.99764 * 45.70202 * 4 3 2 22 22 H 1.08004 * 120.00282 * 359.97438 * 1 2 3 23 23 H 1.08003 * 119.99617 * 180.02562 * 1 2 3 24 24 H 1.08003 * 120.00353 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47168 * 5.00083 * 3 2 1 26 26 H 1.09004 * 109.47299 * 245.00341 * 3 2 1 27 27 H 1.09005 * 109.48684 * 52.79597 * 5 4 3 28 28 H 1.08993 * 109.51640 * 292.72649 * 5 4 3 29 29 H 1.09001 * 109.47160 * 59.61699 * 8 6 5 30 30 H 1.09002 * 109.47226 * 299.61488 * 8 6 5 31 31 H 1.09000 * 109.46774 * 179.61182 * 8 6 5 32 32 H 0.97000 * 120.00117 * 174.98770 * 13 12 10 33 33 H 1.08990 * 109.47062 * 297.46154 * 20 18 9 34 34 H 1.08999 * 109.46698 * 57.46579 * 20 18 9 35 35 H 1.08999 * 109.46859 * 177.45729 * 20 18 9 36 36 H 1.09000 * 109.48670 * 307.21286 * 21 4 3 37 37 H 1.08994 * 109.49319 * 67.29025 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9962 1.3321 1.1345 5 6 3.9125 2.4760 1.0356 6 6 4.7435 2.5731 2.3196 7 1 5.5002 3.3495 2.2080 8 6 3.8295 2.9120 3.4988 9 7 5.3966 1.2768 2.5572 10 6 6.7436 1.2010 2.7910 11 1 7.2929 0.3172 2.5020 12 6 7.4033 2.2601 3.3993 13 7 6.7133 3.2180 3.9813 14 14 9.2701 2.3258 3.3921 15 1 9.8044 1.1378 2.6791 16 1 9.7192 3.5615 2.7019 17 1 9.7707 2.3298 4.7902 18 6 4.5575 0.0644 2.5318 19 1 3.8886 0.0611 3.3923 20 6 5.4506 -1.1774 2.5704 21 6 3.7340 0.0660 1.2396 22 1 -0.5401 0.9353 0.0004 23 1 -0.5400 -0.9354 0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3585 2.1316 0.0896 26 1 2.6212 1.4027 -0.9314 27 1 3.3372 3.3925 0.9045 28 1 4.5764 2.3381 0.1822 29 1 3.0738 2.1342 3.6081 30 1 3.3416 3.8696 3.3169 31 1 4.4220 2.9737 4.4116 32 1 7.1730 3.9194 4.4689 33 1 6.0807 -1.1995 1.6814 34 1 6.0790 -1.1453 3.4605 35 1 4.8283 -2.0718 2.5972 36 1 3.0291 -0.7652 1.2563 37 1 4.4003 -0.0388 0.3834 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602857085.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:49 Heat of formation + Delta-G solvation = 54.412138 kcal Electronic energy + Delta-G solvation = -16532.619598 eV Core-core repulsion = 14118.440020 eV Total energy + Delta-G solvation = -2414.179579 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.59617 -35.49519 -32.88635 -32.47860 -30.82379 -27.84440 -26.27198 -25.75497 -23.82442 -22.18829 -20.66676 -19.27862 -18.47577 -16.19844 -15.66377 -14.91951 -14.53592 -14.44655 -13.86293 -13.58095 -13.07146 -12.76305 -12.73621 -11.81207 -11.76704 -11.43268 -11.36439 -10.92830 -10.87240 -10.70388 -10.45770 -10.40642 -10.39761 -9.97569 -9.83359 -9.41914 -9.38405 -9.10834 -8.40626 -7.64955 -6.49994 -5.70966 -3.14058 2.37763 3.39174 3.47352 3.48583 4.51631 4.62071 5.01295 5.27195 5.38626 5.44515 5.64982 5.85037 5.89626 5.94064 6.01872 6.17977 6.21126 6.30122 6.37312 6.41406 6.49791 6.67978 6.70387 6.88986 6.92795 7.02972 7.11302 7.18351 7.31754 7.61672 7.69317 7.81319 7.93110 8.04423 8.54853 9.31167 9.92101 10.52826 11.37421 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.042018 B = 0.008344 C = 0.007613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.228167 B = 3354.939211 C = 3676.818001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.143 4.143 3 C 0.077 3.923 4 N -0.525 5.525 5 C 0.040 3.960 6 C 0.199 3.801 7 H 0.094 0.906 8 C -0.135 4.135 9 N -0.586 5.586 10 C -0.245 4.245 11 H 0.068 0.932 12 C 0.002 3.998 13 N -0.902 5.902 14 Si 0.900 3.100 15 H -0.280 1.280 16 H -0.291 1.291 17 H -0.291 1.291 18 C 0.170 3.830 19 H 0.033 0.967 20 C -0.138 4.138 21 C 0.045 3.955 22 H 0.095 0.905 23 H 0.094 0.906 24 H 0.109 0.891 25 H 0.073 0.927 26 H 0.034 0.966 27 H 0.059 0.941 28 H 0.023 0.977 29 H 0.032 0.968 30 H 0.019 0.981 31 H 0.073 0.927 32 H 0.252 0.748 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.038 0.962 36 H 0.065 0.935 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.966 -4.362 -6.227 11.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.161 4.161 3 C -0.051 4.051 4 N -0.249 5.249 5 C -0.089 4.089 6 C 0.092 3.908 7 H 0.112 0.888 8 C -0.194 4.194 9 N -0.309 5.309 10 C -0.375 4.375 11 H 0.086 0.914 12 C -0.196 4.196 13 N -0.547 5.547 14 Si 0.730 3.270 15 H -0.205 1.205 16 H -0.218 1.218 17 H -0.218 1.218 18 C 0.063 3.937 19 H 0.051 0.949 20 C -0.196 4.196 21 C -0.085 4.085 22 H 0.113 0.887 23 H 0.112 0.888 24 H 0.127 0.873 25 H 0.091 0.909 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.041 0.959 29 H 0.051 0.949 30 H 0.038 0.962 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -8.131 -4.129 -5.767 10.790 hybrid contribution 1.376 0.021 -0.695 1.542 sum -6.755 -4.108 -6.463 10.211 Atomic orbital electron populations 1.23732 0.95796 1.01475 1.02219 1.23027 0.95997 0.98526 0.98575 1.21296 0.95572 0.95372 0.92848 1.62109 1.19309 1.03779 1.39731 1.22903 0.93734 0.91829 1.00467 1.20382 0.92449 0.89076 0.88899 0.88806 1.21967 0.98533 0.97071 1.01785 1.44348 1.03966 1.00107 1.82511 1.19210 0.83006 1.02560 1.32735 0.91411 1.25104 0.97571 0.98785 0.98117 1.69936 1.33320 1.15108 1.36338 0.86255 0.86137 0.77387 0.77206 1.20476 1.21768 1.21838 1.20549 0.91541 0.88065 0.93538 0.94915 1.21807 0.99496 0.95864 1.02429 1.22753 0.95471 0.91023 0.99229 0.88717 0.88780 0.87296 0.90907 0.94788 0.92264 0.95922 0.94891 0.96206 0.90787 0.93782 0.93195 0.91657 0.94309 0.91700 0.95652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.26 14.32 29.02 0.42 -1.85 16 2 C -0.14 -1.92 8.56 -36.02 -0.31 -2.23 16 3 C 0.08 1.17 5.71 -4.98 -0.03 1.14 16 4 N -0.53 -9.75 4.27 -235.76 -1.01 -10.76 16 5 C 0.04 0.81 4.97 -3.69 -0.02 0.79 16 6 C 0.20 4.74 2.33 -67.49 -0.16 4.59 16 7 H 0.09 2.53 6.20 -51.93 -0.32 2.21 16 8 C -0.13 -3.14 8.95 37.16 0.33 -2.81 16 9 N -0.59 -14.55 2.74 -156.71 -0.43 -14.98 16 10 C -0.25 -6.58 8.64 -15.06 -0.13 -6.72 16 11 H 0.07 1.79 6.31 -52.49 -0.33 1.46 16 12 C 0.00 0.06 5.01 -17.43 -0.09 -0.02 16 13 N -0.90 -25.48 9.64 55.49 0.53 -24.95 16 14 Si 0.90 21.61 29.58 -169.99 -5.03 16.58 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 18 C 0.17 3.63 3.25 -67.28 -0.22 3.41 16 19 H 0.03 0.76 7.63 -51.93 -0.40 0.36 16 20 C -0.14 -2.64 7.97 37.16 0.30 -2.34 16 21 C 0.04 0.83 4.48 -3.70 -0.02 0.82 16 22 H 0.09 1.04 7.84 -52.48 -0.41 0.63 16 23 H 0.09 0.94 8.06 -52.48 -0.42 0.52 16 24 H 0.11 1.42 6.45 -52.48 -0.34 1.08 16 25 H 0.07 1.05 7.79 -51.93 -0.40 0.65 16 26 H 0.03 0.52 8.08 -51.93 -0.42 0.10 16 27 H 0.06 1.11 8.11 -51.93 -0.42 0.68 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.03 0.75 7.07 -51.93 -0.37 0.38 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 1.94 6.79 -51.93 -0.35 1.59 16 32 H 0.25 6.95 8.32 -40.82 -0.34 6.61 16 33 H 0.05 0.96 7.73 -51.93 -0.40 0.56 16 34 H 0.06 1.34 7.41 -51.93 -0.38 0.96 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 1.07 5.71 -51.93 -0.30 0.78 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 283.81 15.07 4.28 4.28 Total: -1.00 -28.04 283.81 -7.67 -35.71 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.10 Total: -0.66 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 0.08 Total: -5.23 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: -0.90 Total: -50.68 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.04 -7.67 -35.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602857085.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.126 kcal (2) G-P(sol) polarization free energy of solvation -28.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds