Wall clock time and date at job start Mon Mar 30 2020 03:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 119.99851 * 2 1 4 4 N 1.46900 * 109.47377 * 125.00062 * 3 2 1 5 5 C 1.46904 * 111.00074 * 169.99553 * 4 3 2 6 6 C 1.53247 * 109.33773 * 172.74760 * 5 4 3 7 7 H 1.08992 * 109.62255 * 173.74172 * 6 5 4 8 8 C 1.52998 * 109.62807 * 294.12385 * 6 5 4 9 9 N 1.47082 * 108.68077 * 53.93079 * 6 5 4 10 10 C 1.36930 * 120.87695 * 128.71741 * 9 6 5 11 11 H 1.07999 * 119.99956 * 209.45152 * 10 9 6 12 12 C 1.38814 * 120.00419 * 29.44789 * 10 9 6 13 13 N 1.31618 * 119.99592 * 13.08371 * 12 10 9 14 14 Si 1.86795 * 120.00135 * 193.07888 * 12 10 9 15 15 H 1.48498 * 109.47342 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.46994 * 120.00124 * 14 12 10 17 17 H 1.48500 * 109.47240 * 240.00221 * 14 12 10 18 18 C 1.47468 * 117.98166 * 308.89811 * 9 6 5 19 19 H 1.08996 * 109.75893 * 291.22678 * 18 9 6 20 20 C 1.53008 * 109.55547 * 170.80877 * 18 9 6 21 21 C 1.46906 * 110.99764 * 45.70202 * 4 3 2 22 22 H 1.08004 * 120.00282 * 359.97438 * 1 2 3 23 23 H 1.08003 * 119.99617 * 180.02562 * 1 2 3 24 24 H 1.08003 * 120.00353 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47168 * 5.00083 * 3 2 1 26 26 H 1.09004 * 109.47299 * 245.00341 * 3 2 1 27 27 H 1.09005 * 109.48684 * 52.79597 * 5 4 3 28 28 H 1.08993 * 109.51640 * 292.72649 * 5 4 3 29 29 H 1.09001 * 109.47160 * 59.61699 * 8 6 5 30 30 H 1.09002 * 109.47226 * 299.61488 * 8 6 5 31 31 H 1.09000 * 109.46774 * 179.61182 * 8 6 5 32 32 H 0.97000 * 120.00117 * 174.98770 * 13 12 10 33 33 H 1.08990 * 109.47062 * 297.46154 * 20 18 9 34 34 H 1.08999 * 109.46698 * 57.46579 * 20 18 9 35 35 H 1.08999 * 109.46859 * 177.45729 * 20 18 9 36 36 H 1.09000 * 109.48670 * 307.21286 * 21 4 3 37 37 H 1.08994 * 109.49319 * 67.29025 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9962 1.3321 1.1345 5 6 3.9125 2.4760 1.0356 6 6 4.7435 2.5731 2.3196 7 1 5.5002 3.3495 2.2080 8 6 3.8295 2.9120 3.4988 9 7 5.3966 1.2768 2.5572 10 6 6.7436 1.2010 2.7910 11 1 7.2929 0.3172 2.5020 12 6 7.4033 2.2601 3.3993 13 7 6.7133 3.2180 3.9813 14 14 9.2701 2.3258 3.3921 15 1 9.8044 1.1378 2.6791 16 1 9.7192 3.5615 2.7019 17 1 9.7707 2.3298 4.7902 18 6 4.5575 0.0644 2.5318 19 1 3.8886 0.0611 3.3923 20 6 5.4506 -1.1774 2.5704 21 6 3.7340 0.0660 1.2396 22 1 -0.5401 0.9353 0.0004 23 1 -0.5400 -0.9354 0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3585 2.1316 0.0896 26 1 2.6212 1.4027 -0.9314 27 1 3.3372 3.3925 0.9045 28 1 4.5764 2.3381 0.1822 29 1 3.0738 2.1342 3.6081 30 1 3.3416 3.8696 3.3169 31 1 4.4220 2.9737 4.4116 32 1 7.1730 3.9194 4.4689 33 1 6.0807 -1.1995 1.6814 34 1 6.0790 -1.1453 3.4605 35 1 4.8283 -2.0718 2.5972 36 1 3.0291 -0.7652 1.2563 37 1 4.4003 -0.0388 0.3834 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602857085.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:49 Heat of formation + Delta-G solvation = 37.595021 kcal Electronic energy + Delta-G solvation = -16533.348843 eV Core-core repulsion = 14118.440020 eV Total energy + Delta-G solvation = -2414.908824 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.18896 -37.00578 -34.35293 -34.20940 -32.56529 -29.70168 -27.76236 -27.28271 -25.71303 -23.70045 -22.34819 -20.57748 -20.11455 -18.02541 -17.24615 -16.48839 -16.02456 -15.90815 -15.66037 -15.28502 -14.79092 -14.35618 -13.92214 -13.55855 -13.37175 -13.05357 -12.86337 -12.78834 -12.56429 -12.32291 -12.22646 -12.17991 -11.85497 -11.77028 -11.58265 -11.18760 -10.96201 -10.52057 -10.31305 -9.11856 -8.45989 -7.77275 -5.21747 1.41679 1.46576 1.49208 1.57935 2.54335 3.17874 3.38065 3.62775 3.96241 4.21979 4.31127 4.34068 4.51829 4.54690 4.62483 4.68141 4.78397 4.83263 4.88082 4.89994 4.99470 5.05766 5.12141 5.26947 5.33566 5.44142 5.56079 5.72913 5.74486 5.79013 5.91998 6.03463 6.26461 6.33582 6.52579 7.26794 7.95952 8.51806 9.29327 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.042018 B = 0.008344 C = 0.007613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.228167 B = 3354.939211 C = 3676.818001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.168 4.168 3 C 0.079 3.921 4 N -0.534 5.534 5 C 0.052 3.948 6 C 0.196 3.804 7 H 0.057 0.943 8 C -0.117 4.117 9 N -0.602 5.602 10 C -0.250 4.250 11 H 0.069 0.931 12 C -0.049 4.049 13 N -0.926 5.926 14 Si 0.959 3.041 15 H -0.270 1.270 16 H -0.295 1.295 17 H -0.295 1.295 18 C 0.162 3.838 19 H 0.017 0.983 20 C -0.129 4.129 21 C 0.056 3.944 22 H 0.102 0.898 23 H 0.114 0.886 24 H 0.113 0.887 25 H 0.081 0.919 26 H 0.034 0.966 27 H 0.076 0.924 28 H 0.012 0.988 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.246 0.754 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.352 -5.610 -7.386 13.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.186 4.186 3 C -0.048 4.048 4 N -0.258 5.258 5 C -0.077 4.077 6 C 0.089 3.911 7 H 0.075 0.925 8 C -0.176 4.176 9 N -0.326 5.326 10 C -0.380 4.380 11 H 0.087 0.913 12 C -0.245 4.245 13 N -0.573 5.573 14 Si 0.789 3.211 15 H -0.195 1.195 16 H -0.222 1.222 17 H -0.222 1.222 18 C 0.056 3.944 19 H 0.035 0.965 20 C -0.187 4.187 21 C -0.073 4.073 22 H 0.120 0.880 23 H 0.132 0.868 24 H 0.130 0.870 25 H 0.100 0.900 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.030 0.970 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -9.536 -5.403 -6.944 12.975 hybrid contribution 1.698 0.380 -0.343 1.773 sum -7.838 -5.023 -7.288 11.823 Atomic orbital electron populations 1.23982 0.95237 1.02838 0.98981 1.22931 0.96593 0.97573 1.01472 1.21329 0.94945 0.97096 0.91391 1.62054 1.18904 1.02948 1.41878 1.22609 0.93746 0.93605 0.97726 1.20271 0.92042 0.88012 0.90783 0.92513 1.21742 0.97846 0.97891 1.00089 1.44592 1.03894 1.01519 1.82611 1.19469 0.84358 1.02354 1.31823 0.91340 1.25765 1.01216 0.98922 0.98550 1.70110 1.34373 1.15541 1.37281 0.85314 0.81818 0.77231 0.76738 1.19490 1.22207 1.22189 1.20756 0.91603 0.87586 0.94482 0.96534 1.21713 0.99375 0.96413 1.01191 1.22603 0.95561 0.92163 0.97001 0.87996 0.86775 0.86954 0.90021 0.94798 0.90607 0.96954 0.94650 0.94682 0.94243 0.94480 0.93491 0.93728 0.90631 0.88874 0.96404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.34 14.32 67.79 0.97 -2.37 16 2 C -0.17 -3.93 8.56 25.65 0.22 -3.71 16 3 C 0.08 2.21 5.71 85.56 0.49 2.70 16 4 N -0.53 -18.83 4.27 -899.79 -3.84 -22.67 16 5 C 0.05 2.09 4.97 86.39 0.43 2.52 16 6 C 0.20 9.47 2.33 44.96 0.10 9.57 16 7 H 0.06 3.16 6.20 -2.39 -0.01 3.15 16 8 C -0.12 -5.50 8.95 71.98 0.64 -4.86 16 9 N -0.60 -30.20 2.74 -649.72 -1.78 -31.98 16 10 C -0.25 -13.58 8.64 84.04 0.73 -12.85 16 11 H 0.07 3.64 6.31 -2.91 -0.02 3.62 16 12 C -0.05 -2.74 5.01 84.86 0.43 -2.32 16 13 N -0.93 -53.97 9.64 21.65 0.21 -53.77 16 14 Si 0.96 45.26 29.58 68.60 2.03 47.28 16 15 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 17 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 18 C 0.16 6.79 3.25 44.89 0.15 6.94 16 19 H 0.02 0.76 7.63 -2.39 -0.02 0.75 16 20 C -0.13 -4.77 7.97 71.98 0.57 -4.20 16 21 C 0.06 1.98 4.48 86.38 0.39 2.36 16 22 H 0.10 1.83 7.84 -2.91 -0.02 1.81 16 23 H 0.11 1.77 8.06 -2.91 -0.02 1.75 16 24 H 0.11 2.54 6.45 -2.91 -0.02 2.53 16 25 H 0.08 2.12 7.79 -2.39 -0.02 2.10 16 26 H 0.03 0.95 8.08 -2.39 -0.02 0.93 16 27 H 0.08 2.73 8.11 -2.38 -0.02 2.71 16 28 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.03 1.60 7.07 -2.39 -0.02 1.59 16 30 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.04 2.11 6.79 -2.39 -0.02 2.10 16 32 H 0.25 14.02 8.32 -92.71 -0.77 13.25 16 33 H 0.05 1.74 7.73 -2.39 -0.02 1.72 16 34 H 0.04 1.81 7.41 -2.39 -0.02 1.79 16 35 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.09 2.78 5.71 -2.39 -0.01 2.77 16 37 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -60.78 283.81 2.75 -58.03 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 1.02 Total: 9.32 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 5.12 Total: -6.22 kcal Atomic # 7 Polarization: -103.01 SS G_CDS: -5.41 Total: -108.42 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -60.78 2.75 -58.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602857085.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.627 kcal (2) G-P(sol) polarization free energy of solvation -60.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds