Wall clock time and date at job start Mon Mar 30 2020 03:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09012 * 109.46594 * 2 1 4 4 C 1.52996 * 109.47049 * 119.99629 * 2 1 3 5 5 C 1.53935 * 113.73549 * 281.81566 * 4 2 1 6 6 N 1.47965 * 86.18399 * 221.92131 * 5 4 2 7 7 C 1.47960 * 90.75717 * 24.69272 * 6 5 4 8 8 N 1.46894 * 109.47685 * 240.00337 * 2 1 3 9 9 C 1.46899 * 111.00086 * 65.99008 * 8 2 1 10 10 C 1.50703 * 109.47082 * 161.80063 * 9 8 2 11 11 H 1.07999 * 119.99657 * 354.87676 * 10 9 8 12 12 C 1.37877 * 119.99999 * 174.87814 * 10 9 8 13 13 N 1.31510 * 120.00198 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99659 * 179.72362 * 12 10 9 15 15 H 1.48503 * 109.47448 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.47401 * 120.00140 * 14 12 10 17 17 H 1.48503 * 109.47138 * 239.99668 * 14 12 10 18 18 C 1.46902 * 110.99523 * 302.04074 * 8 2 1 19 19 C 1.53002 * 117.49840 * 265.40923 * 18 8 2 20 20 C 1.53006 * 60.00078 * 252.51165 * 19 18 8 21 21 H 1.09002 * 109.46968 * 65.88760 * 1 2 3 22 22 H 1.09002 * 109.46499 * 185.88175 * 1 2 3 23 23 H 1.08991 * 109.47852 * 305.88123 * 1 2 3 24 24 H 1.08998 * 112.93918 * 53.52477 * 4 2 1 25 25 H 1.08994 * 113.76214 * 336.24387 * 5 4 2 26 26 H 1.09002 * 113.75456 * 107.60393 * 5 4 2 27 27 H 1.00896 * 110.99796 * 271.79869 * 6 5 4 28 28 H 1.09001 * 113.75321 * 220.98931 * 7 6 5 29 29 H 1.08999 * 113.76019 * 89.62934 * 7 6 5 30 30 H 1.08998 * 109.47150 * 41.80375 * 9 8 2 31 31 H 1.09003 * 109.47545 * 281.79806 * 9 8 2 32 32 H 0.96999 * 119.99980 * 180.02562 * 13 12 10 33 33 H 1.09000 * 115.55370 * 51.11594 * 18 8 2 34 34 H 1.08998 * 117.49803 * 0.02562 * 19 18 8 35 35 H 1.08994 * 117.50197 * 145.02590 * 19 18 8 36 36 H 1.08999 * 117.49713 * 252.51094 * 20 19 18 37 37 H 1.09003 * 117.50049 * 107.48804 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.9744 0.1332 2.5281 6 7 3.3095 -0.4193 2.8471 7 6 3.5698 -0.6709 1.4125 8 7 2.0198 -0.6924 -1.1994 9 6 1.6692 0.0514 -2.4167 10 6 2.5372 -0.4141 -3.5573 11 1 3.3304 -1.1247 -3.3771 12 6 2.3188 0.0671 -4.8308 13 7 1.3527 0.9320 -5.0502 14 14 3.3997 -0.5041 -6.2431 15 1 4.4096 -1.4673 -5.7355 16 1 2.5595 -1.1657 -7.2734 17 1 4.0891 0.6662 -6.8435 18 6 1.5093 -2.0686 -1.2580 19 6 2.3982 -3.1766 -0.6896 20 6 2.2144 -3.0440 -2.2028 21 1 -0.3633 0.4198 -0.9380 22 1 -0.3632 -1.0223 0.1053 23 1 -0.3634 0.6022 0.8325 24 1 1.6190 -1.7199 1.3649 25 1 1.9771 1.2068 2.3396 26 1 1.1937 -0.1758 3.2231 27 1 3.2295 -1.2860 3.3575 28 1 4.0639 -1.6225 1.2162 29 1 4.0391 0.1674 0.8977 30 1 1.8287 1.1167 -2.2501 31 1 0.6219 -0.1253 -2.6616 32 1 1.1989 1.2703 -5.9462 33 1 0.4314 -2.1758 -1.1368 34 1 3.3616 -2.8843 -0.2718 35 1 1.9052 -4.0130 -0.1942 36 1 1.6004 -3.7930 -2.7027 37 1 3.0570 -2.6644 -2.7808 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686267797.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:25 Heat of formation + Delta-G solvation = 67.892777 kcal Electronic energy + Delta-G solvation = -16297.144092 eV Core-core repulsion = 13883.549078 eV Total energy + Delta-G solvation = -2413.595014 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.71279 -37.42781 -34.08091 -32.70093 -29.78245 -26.66667 -26.15962 -25.51122 -22.33250 -21.95604 -21.59442 -19.98409 -18.56720 -16.62696 -16.29980 -15.18085 -14.76703 -14.34433 -13.97662 -13.83409 -13.23639 -12.75310 -12.43684 -12.26513 -12.20590 -11.90400 -11.80155 -11.18615 -10.97713 -10.88143 -10.75436 -10.55544 -10.32937 -10.19974 -9.88251 -9.55967 -9.09190 -9.06946 -8.38527 -8.27648 -7.22470 -5.99360 -3.98998 3.31567 3.39430 3.43270 4.25499 4.40537 4.58011 4.60413 4.99982 5.11612 5.36076 5.48659 5.58752 5.60678 5.68968 5.76015 5.80722 5.91910 5.97301 6.00293 6.04398 6.16305 6.20502 6.25436 6.43213 6.49970 6.52613 6.68625 6.74988 6.98829 7.25712 7.42703 7.45805 7.88993 8.14900 8.24314 8.58900 9.08342 9.64042 11.11369 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.033951 B = 0.007952 C = 0.007524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.509409 B = 3520.422019 C = 3720.450084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.093 3.907 3 H 0.077 0.923 4 C -0.139 4.139 5 C 0.020 3.980 6 N -0.669 5.669 7 C 0.039 3.961 8 N -0.501 5.501 9 C 0.196 3.804 10 C -0.497 4.497 11 H 0.068 0.932 12 C 0.053 3.947 13 N -0.901 5.901 14 Si 0.893 3.107 15 H -0.272 1.272 16 H -0.286 1.286 17 H -0.285 1.285 18 C 0.030 3.970 19 C -0.189 4.189 20 C -0.155 4.155 21 H 0.062 0.938 22 H 0.050 0.950 23 H 0.048 0.952 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.064 0.936 27 H 0.329 0.671 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.023 0.977 31 H -0.002 1.002 32 H 0.259 0.741 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.301 -4.896 11.388 12.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.017 4.017 3 H 0.095 0.905 4 C -0.158 4.158 5 C -0.111 4.111 6 N -0.295 5.295 7 C -0.090 4.090 8 N -0.225 5.225 9 C 0.071 3.929 10 C -0.535 4.535 11 H 0.086 0.914 12 C -0.148 4.148 13 N -0.541 5.541 14 Si 0.721 3.279 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.212 1.212 18 C -0.080 4.080 19 C -0.227 4.227 20 C -0.192 4.192 21 H 0.081 0.919 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.104 0.896 25 H 0.112 0.888 26 H 0.083 0.917 27 H 0.143 0.857 28 H 0.086 0.914 29 H 0.117 0.883 30 H 0.041 0.959 31 H 0.016 0.984 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.651 -4.146 11.508 12.250 hybrid contribution -1.205 -0.989 -1.327 2.048 sum -0.554 -5.136 10.181 11.416 Atomic orbital electron populations 1.22431 0.98545 1.01205 1.01956 1.21645 0.92006 0.97625 0.90460 0.90516 1.24165 0.97287 0.99436 0.94952 1.23665 0.91406 1.00482 0.95531 1.65112 1.23111 1.28417 1.12817 1.23508 0.95407 1.01961 0.88153 1.62116 1.57473 1.00031 1.02832 1.19689 0.95194 0.92769 0.85207 1.21300 1.15547 1.25141 0.91537 0.91396 1.24979 0.95554 0.95409 0.98829 1.69964 1.31291 1.31388 1.21480 0.86521 0.80499 0.78511 0.82363 1.19672 1.21247 1.21150 1.22023 0.93576 0.87632 1.04741 1.23043 1.01819 1.00072 0.97742 1.23059 1.04107 1.00418 0.91597 0.91932 0.93124 0.93275 0.89583 0.88791 0.91725 0.85723 0.91379 0.88310 0.95872 0.98401 0.93138 0.91287 0.89047 0.90577 0.90318 0.86801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.95 8.50 37.16 0.32 -2.63 16 2 C 0.09 1.58 2.02 -67.72 -0.14 1.44 16 3 H 0.08 1.39 7.84 -51.92 -0.41 0.98 16 4 C -0.14 -1.94 2.43 -89.69 -0.22 -2.16 16 5 C 0.02 0.24 8.41 -2.76 -0.02 0.22 16 6 N -0.67 -8.64 8.56 -116.99 -1.00 -9.64 16 7 C 0.04 0.56 8.19 -2.77 -0.02 0.53 16 8 N -0.50 -10.17 4.42 -220.14 -0.97 -11.15 16 9 C 0.20 4.93 3.99 -4.97 -0.02 4.91 16 10 C -0.50 -13.49 8.02 -34.44 -0.28 -13.77 16 11 H 0.07 1.82 5.53 -52.49 -0.29 1.53 16 12 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 13 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 14 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 15 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 C 0.03 0.55 3.75 -67.71 -0.25 0.30 16 19 C -0.19 -3.01 9.13 -26.73 -0.24 -3.25 16 20 C -0.15 -2.89 9.41 -26.72 -0.25 -3.15 16 21 H 0.06 1.16 6.72 -51.93 -0.35 0.81 16 22 H 0.05 0.79 6.59 -51.93 -0.34 0.45 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.09 1.21 7.03 -51.93 -0.37 0.84 16 25 H 0.09 1.20 8.03 -51.93 -0.42 0.78 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.33 3.66 8.89 -39.29 -0.35 3.31 16 28 H 0.07 0.94 6.97 -51.93 -0.36 0.58 16 29 H 0.10 1.57 8.10 -51.93 -0.42 1.15 16 30 H 0.02 0.63 7.82 -51.93 -0.41 0.22 16 31 H 0.00 -0.05 7.17 -51.93 -0.37 -0.42 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.07 1.31 6.42 -51.93 -0.33 0.97 16 34 H 0.09 1.45 6.81 -51.93 -0.35 1.10 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.11 2.41 5.60 -51.93 -0.29 2.11 16 LS Contribution 286.83 15.07 4.32 4.32 Total: -1.00 -28.42 286.83 -9.05 -37.47 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -5.88 Total: 4.52 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -1.23 Total: -16.17 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: -1.24 Total: -46.62 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.42 -9.05 -37.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686267797.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.359 kcal (2) G-P(sol) polarization free energy of solvation -28.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds