Wall clock time and date at job start Mon Mar 30 2020 03:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09012 * 109.46594 * 2 1 4 4 C 1.52996 * 109.47049 * 119.99629 * 2 1 3 5 5 C 1.53935 * 113.73549 * 281.81566 * 4 2 1 6 6 N 1.47965 * 86.18399 * 221.92131 * 5 4 2 7 7 C 1.47960 * 90.75717 * 24.69272 * 6 5 4 8 8 N 1.46894 * 109.47685 * 240.00337 * 2 1 3 9 9 C 1.46899 * 111.00086 * 65.99008 * 8 2 1 10 10 C 1.50703 * 109.47082 * 161.80063 * 9 8 2 11 11 H 1.07999 * 119.99657 * 354.87676 * 10 9 8 12 12 C 1.37877 * 119.99999 * 174.87814 * 10 9 8 13 13 N 1.31510 * 120.00198 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99659 * 179.72362 * 12 10 9 15 15 H 1.48503 * 109.47448 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.47401 * 120.00140 * 14 12 10 17 17 H 1.48503 * 109.47138 * 239.99668 * 14 12 10 18 18 C 1.46902 * 110.99523 * 302.04074 * 8 2 1 19 19 C 1.53002 * 117.49840 * 265.40923 * 18 8 2 20 20 C 1.53006 * 60.00078 * 252.51165 * 19 18 8 21 21 H 1.09002 * 109.46968 * 65.88760 * 1 2 3 22 22 H 1.09002 * 109.46499 * 185.88175 * 1 2 3 23 23 H 1.08991 * 109.47852 * 305.88123 * 1 2 3 24 24 H 1.08998 * 112.93918 * 53.52477 * 4 2 1 25 25 H 1.08994 * 113.76214 * 336.24387 * 5 4 2 26 26 H 1.09002 * 113.75456 * 107.60393 * 5 4 2 27 27 H 1.00896 * 110.99796 * 271.79869 * 6 5 4 28 28 H 1.09001 * 113.75321 * 220.98931 * 7 6 5 29 29 H 1.08999 * 113.76019 * 89.62934 * 7 6 5 30 30 H 1.08998 * 109.47150 * 41.80375 * 9 8 2 31 31 H 1.09003 * 109.47545 * 281.79806 * 9 8 2 32 32 H 0.96999 * 119.99980 * 180.02562 * 13 12 10 33 33 H 1.09000 * 115.55370 * 51.11594 * 18 8 2 34 34 H 1.08998 * 117.49803 * 0.02562 * 19 18 8 35 35 H 1.08994 * 117.50197 * 145.02590 * 19 18 8 36 36 H 1.08999 * 117.49713 * 252.51094 * 20 19 18 37 37 H 1.09003 * 117.50049 * 107.48804 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.9744 0.1332 2.5281 6 7 3.3095 -0.4193 2.8471 7 6 3.5698 -0.6709 1.4125 8 7 2.0198 -0.6924 -1.1994 9 6 1.6692 0.0514 -2.4167 10 6 2.5372 -0.4141 -3.5573 11 1 3.3304 -1.1247 -3.3771 12 6 2.3188 0.0671 -4.8308 13 7 1.3527 0.9320 -5.0502 14 14 3.3997 -0.5041 -6.2431 15 1 4.4096 -1.4673 -5.7355 16 1 2.5595 -1.1657 -7.2734 17 1 4.0891 0.6662 -6.8435 18 6 1.5093 -2.0686 -1.2580 19 6 2.3982 -3.1766 -0.6896 20 6 2.2144 -3.0440 -2.2028 21 1 -0.3633 0.4198 -0.9380 22 1 -0.3632 -1.0223 0.1053 23 1 -0.3634 0.6022 0.8325 24 1 1.6190 -1.7199 1.3649 25 1 1.9771 1.2068 2.3396 26 1 1.1937 -0.1758 3.2231 27 1 3.2295 -1.2860 3.3575 28 1 4.0639 -1.6225 1.2162 29 1 4.0391 0.1674 0.8977 30 1 1.8287 1.1167 -2.2501 31 1 0.6219 -0.1253 -2.6616 32 1 1.1989 1.2703 -5.9462 33 1 0.4314 -2.1758 -1.1368 34 1 3.3616 -2.8843 -0.2718 35 1 1.9052 -4.0130 -0.1942 36 1 1.6004 -3.7930 -2.7027 37 1 3.0570 -2.6644 -2.7808 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686267797.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:25 Heat of formation + Delta-G solvation = 47.317821 kcal Electronic energy + Delta-G solvation = -16298.036289 eV Core-core repulsion = 13883.549078 eV Total energy + Delta-G solvation = -2414.487211 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.94081 -38.84305 -35.59232 -34.72278 -31.46438 -28.30005 -27.59690 -26.63261 -24.25878 -23.32837 -23.00866 -21.24428 -20.02686 -18.59821 -17.35200 -16.78943 -16.60201 -15.91336 -15.47515 -15.23770 -14.48889 -14.25934 -14.05659 -13.85574 -13.48701 -13.34061 -13.15805 -12.94818 -12.74957 -12.49004 -12.36581 -12.07966 -11.83908 -11.46232 -11.38248 -11.16460 -11.00734 -10.59436 -10.51530 -9.35786 -8.89590 -8.14485 -6.21795 1.39927 1.41230 1.53640 2.41854 3.06489 3.16703 3.19172 3.26541 3.82547 3.85316 4.18748 4.24273 4.31484 4.43322 4.45389 4.56425 4.65451 4.76159 4.78177 4.85149 4.88582 4.96105 5.06397 5.09003 5.14753 5.18811 5.27918 5.28590 5.42302 5.48020 5.51174 5.80134 6.15455 6.48742 6.53606 6.74102 6.95758 7.46429 8.96211 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.033951 B = 0.007952 C = 0.007524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.509409 B = 3520.422019 C = 3720.450084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.090 3.910 3 H 0.058 0.942 4 C -0.128 4.128 5 C 0.028 3.972 6 N -0.670 5.670 7 C 0.038 3.962 8 N -0.503 5.503 9 C 0.215 3.785 10 C -0.503 4.503 11 H 0.071 0.929 12 C -0.002 4.002 13 N -0.939 5.939 14 Si 0.960 3.040 15 H -0.261 1.261 16 H -0.282 1.282 17 H -0.283 1.283 18 C 0.009 3.991 19 C -0.145 4.145 20 C -0.174 4.174 21 H 0.027 0.973 22 H 0.059 0.941 23 H 0.075 0.925 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.344 0.656 28 H 0.075 0.925 29 H 0.075 0.925 30 H -0.009 1.009 31 H -0.034 1.034 32 H 0.260 0.740 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.216 -6.699 12.986 14.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.020 4.020 3 H 0.076 0.924 4 C -0.148 4.148 5 C -0.103 4.103 6 N -0.297 5.297 7 C -0.092 4.092 8 N -0.226 5.226 9 C 0.089 3.911 10 C -0.541 4.541 11 H 0.089 0.911 12 C -0.199 4.199 13 N -0.581 5.581 14 Si 0.786 3.214 15 H -0.185 1.185 16 H -0.208 1.208 17 H -0.209 1.209 18 C -0.100 4.100 19 C -0.182 4.182 20 C -0.211 4.211 21 H 0.046 0.954 22 H 0.078 0.922 23 H 0.094 0.906 24 H 0.116 0.884 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.159 0.841 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.009 0.991 31 H -0.016 1.016 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.129 0.871 36 H 0.108 0.892 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.178 -5.968 13.139 14.479 hybrid contribution -1.380 -0.414 -1.765 2.279 sum -0.202 -6.382 11.374 13.044 Atomic orbital electron populations 1.22323 0.97733 1.01988 1.01155 1.21726 0.92691 0.96972 0.90596 0.92396 1.24131 0.96989 0.99905 0.93766 1.23657 0.91914 0.99920 0.94781 1.65050 1.23425 1.29405 1.11863 1.23393 0.95344 1.01363 0.89062 1.62021 1.57921 1.00793 1.01910 1.19268 0.92977 0.91544 0.87324 1.21635 1.15525 1.24684 0.92303 0.91133 1.25852 0.96867 0.95521 1.01666 1.70100 1.33106 1.32809 1.22110 0.85462 0.78835 0.78168 0.78952 1.18526 1.20784 1.20895 1.22103 0.94124 0.87047 1.06774 1.23069 1.01098 0.98719 0.95336 1.23016 1.03604 1.01078 0.93441 0.95409 0.92161 0.90627 0.88446 0.89447 0.89149 0.84099 0.90669 0.90663 0.99059 1.01620 0.93094 0.91337 0.88659 0.87148 0.89188 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.55 8.50 71.98 0.61 -4.94 16 2 C 0.09 3.05 2.02 44.91 0.09 3.14 16 3 H 0.06 2.17 7.84 -2.38 -0.02 2.15 16 4 C -0.13 -3.31 2.43 -10.15 -0.02 -3.34 16 5 C 0.03 0.61 8.41 86.40 0.73 1.34 16 6 N -0.67 -15.47 8.56 -524.05 -4.48 -19.95 16 7 C 0.04 1.02 8.19 86.41 0.71 1.73 16 8 N -0.50 -20.72 4.42 -850.39 -3.76 -24.48 16 9 C 0.21 11.33 3.99 85.56 0.34 11.67 16 10 C -0.50 -28.07 8.02 25.60 0.21 -27.86 16 11 H 0.07 3.84 5.53 -2.91 -0.02 3.83 16 12 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 13 N -0.94 -57.17 13.29 21.45 0.28 -56.89 16 14 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 15 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 16 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 18 C 0.01 0.31 3.75 44.92 0.17 0.48 16 19 C -0.14 -4.16 9.13 30.60 0.28 -3.88 16 20 C -0.17 -6.33 9.41 30.60 0.29 -6.04 16 21 H 0.03 1.06 6.72 -2.39 -0.02 1.04 16 22 H 0.06 1.80 6.59 -2.39 -0.02 1.78 16 23 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.10 2.35 7.03 -2.39 -0.02 2.34 16 25 H 0.09 2.07 8.03 -2.39 -0.02 2.05 16 26 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.34 6.38 8.89 -89.70 -0.80 5.58 16 28 H 0.07 1.89 6.97 -2.39 -0.02 1.87 16 29 H 0.07 2.38 8.10 -2.39 -0.02 2.36 16 30 H -0.01 -0.50 7.82 -2.39 -0.02 -0.52 16 31 H -0.03 -1.98 7.17 -2.39 -0.02 -1.99 16 32 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 33 H 0.07 2.52 6.42 -2.39 -0.02 2.51 16 34 H 0.10 2.71 6.81 -2.39 -0.02 2.69 16 35 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 37 H 0.09 3.63 5.60 -2.39 -0.01 3.62 16 Total: -1.00 -62.96 286.83 -1.82 -64.78 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 0.26 Total: 17.19 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: 3.86 Total: -27.37 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -7.96 Total: -101.32 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -62.96 -1.82 -64.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686267797.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.102 kcal (2) G-P(sol) polarization free energy of solvation -62.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds