Wall clock time and date at job start Mon Mar 30 2020 02:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 119.99962 * 2 1 4 4 H 1.48498 * 109.46928 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47227 * 300.00335 * 3 2 1 6 6 H 1.48497 * 109.46654 * 60.00487 * 3 2 1 7 7 C 1.37877 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99757 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00000 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47420 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.47448 * 180.02562 * 10 9 7 12 12 C 1.46903 * 111.00081 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47050 * 179.97438 * 12 11 10 14 14 H 1.08998 * 113.03035 * 72.79305 * 13 12 11 15 15 C 1.53937 * 113.75675 * 204.50735 * 13 12 11 16 16 C 1.53933 * 86.33936 * 138.04075 * 15 13 12 17 17 N 1.47954 * 113.75865 * 301.06854 * 13 12 11 18 18 C 1.46904 * 111.00075 * 108.09968 * 17 13 12 19 19 C 1.52994 * 117.49796 * 236.15771 * 18 17 13 20 20 C 1.52995 * 117.49905 * 167.53200 * 18 17 13 21 21 H 0.97002 * 120.00322 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47180 * 60.00470 * 9 7 2 23 23 H 1.09001 * 109.47380 * 300.00657 * 9 7 2 24 24 H 1.08999 * 109.47153 * 59.99990 * 10 9 7 25 25 H 1.09005 * 109.47168 * 299.99984 * 10 9 7 26 26 H 1.00901 * 110.99700 * 56.04502 * 11 10 9 27 27 H 1.09003 * 109.46861 * 59.99868 * 12 11 10 28 28 H 1.08997 * 109.47475 * 299.99979 * 12 11 10 29 29 H 1.08995 * 113.73423 * 23.68333 * 15 13 12 30 30 H 1.09003 * 113.73018 * 252.39518 * 15 13 12 31 31 H 1.09004 * 113.76142 * 90.59316 * 16 15 13 32 32 H 1.08996 * 113.76042 * 221.96344 * 16 15 13 33 33 H 1.09002 * 115.54747 * 21.86887 * 18 17 13 34 34 H 1.09001 * 117.50153 * 359.97438 * 19 18 17 35 35 H 1.09001 * 117.49625 * 145.02144 * 19 18 17 36 36 H 1.09005 * 117.50183 * 214.97637 * 20 18 17 37 37 H 1.09007 * 117.50255 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 7 1.5108 -4.9342 -0.0012 12 6 2.4353 -6.0759 -0.0018 13 6 1.6352 -7.3800 -0.0018 14 1 1.1589 -7.5881 -0.9598 15 6 2.4039 -8.5791 0.5821 16 6 1.0883 -8.9522 1.2889 17 7 0.7283 -7.5229 1.1585 18 6 -0.6750 -7.3684 0.7520 19 6 -1.5015 -6.2937 1.4609 20 6 -1.7514 -7.7730 1.7611 21 1 -0.4851 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8904 23 1 0.6246 -2.5570 0.8896 24 1 2.8719 -3.6043 0.8894 25 1 2.8719 -3.6043 -0.8906 26 1 0.8746 -4.9840 -0.7828 27 1 3.0633 -6.0353 0.8882 28 1 3.0632 -6.0345 -0.8917 29 1 3.2042 -8.2963 1.2658 30 1 2.7201 -9.3045 -0.1675 31 1 0.4518 -9.6201 0.7083 32 1 1.2212 -9.2792 2.3201 33 1 -0.8813 -7.5481 -0.3031 34 1 -1.0043 -5.7016 2.2292 35 1 -2.2518 -5.7660 0.8721 36 1 -2.6661 -8.2185 1.3699 37 1 -1.4185 -8.1543 2.7266 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691662600.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:27 Heat of formation + Delta-G solvation = 30.904844 kcal Electronic energy + Delta-G solvation = -15348.438350 eV Core-core repulsion = 12933.239419 eV Total energy + Delta-G solvation = -2415.198931 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.98261 -37.44737 -36.68740 -34.93006 -31.80213 -28.97199 -28.29372 -25.80811 -23.59054 -22.87430 -22.44588 -21.96425 -20.45515 -18.50881 -17.61215 -16.79057 -16.39703 -16.17957 -15.83724 -15.27397 -14.82092 -14.41964 -14.23086 -14.02163 -13.82838 -13.17951 -12.87378 -12.55538 -12.47243 -12.33674 -12.32370 -12.03211 -11.94819 -11.74936 -11.35944 -11.11711 -11.06341 -10.91425 -10.57137 -9.51471 -9.13683 -8.20397 -6.32123 1.39644 1.40564 1.53928 2.40365 2.85738 2.94036 3.12869 3.39570 3.70834 3.95614 4.10189 4.11435 4.18261 4.30764 4.37057 4.50283 4.60654 4.61851 4.67671 4.77994 4.81560 4.93279 4.99253 5.05228 5.08842 5.15912 5.32990 5.36928 5.44266 5.53365 5.68686 5.79649 6.16371 6.31311 6.34109 6.60902 6.85631 7.37258 8.92064 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.038639 B = 0.005331 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.477658 B = 5250.929198 C = 5840.065895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.036 3.964 10 C 0.086 3.914 11 N -0.682 5.682 12 C 0.080 3.920 13 C 0.037 3.963 14 H 0.082 0.918 15 C -0.128 4.128 16 C 0.006 3.994 17 N -0.457 5.457 18 C -0.019 4.019 19 C -0.168 4.168 20 C -0.158 4.158 21 H 0.264 0.736 22 H -0.011 1.011 23 H -0.009 1.009 24 H 0.052 0.948 25 H 0.016 0.984 26 H 0.331 0.669 27 H 0.064 0.936 28 H 0.035 0.965 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.718 -19.166 -0.035 19.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.002 4.002 10 C -0.043 4.043 11 N -0.312 5.312 12 C -0.050 4.050 13 C -0.073 4.073 14 H 0.099 0.901 15 C -0.166 4.166 16 C -0.122 4.122 17 N -0.181 5.181 18 C -0.128 4.128 19 C -0.205 4.205 20 C -0.195 4.195 21 H 0.073 0.927 22 H 0.007 0.993 23 H 0.009 0.991 24 H 0.071 0.929 25 H 0.034 0.966 26 H 0.148 0.852 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.129 0.871 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.549 -18.630 1.218 18.733 hybrid contribution 0.123 0.842 -1.562 1.779 sum 1.671 -17.787 -0.344 17.869 Atomic orbital electron populations 1.70120 1.07871 1.27725 1.51514 1.25987 0.95764 1.03405 0.94572 0.85358 0.79023 0.78551 0.77846 1.18558 1.20184 1.20330 1.21655 0.93501 0.92331 1.50830 0.92245 1.18870 0.94204 0.92325 0.94751 1.21747 0.95475 0.88805 0.98264 1.60390 1.19955 1.01313 1.49511 1.21878 0.93857 0.89227 1.00027 1.23524 0.94861 0.94964 0.93947 0.90058 1.23346 0.97176 0.96080 1.00042 1.23838 0.96008 0.90333 1.02056 1.68375 1.01908 1.16776 1.30995 1.22986 0.88578 1.05495 0.95784 1.22772 1.02176 0.92104 1.03484 1.23047 0.99283 0.97212 0.99985 0.92749 0.99265 0.99086 0.92941 0.96591 0.85177 0.91704 0.94645 0.89250 0.88846 0.90225 0.89285 0.89010 0.90805 0.89409 0.87148 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.29 13.29 21.45 0.28 -58.01 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.97 45.23 29.54 68.60 2.03 47.25 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.54 -32.15 9.11 25.60 0.23 -31.92 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.04 2.00 5.23 29.84 0.16 2.16 16 10 C 0.09 3.82 5.62 86.30 0.49 4.31 16 11 N -0.68 -25.51 6.44 -513.87 -3.31 -28.82 16 12 C 0.08 2.33 5.81 86.30 0.50 2.84 16 13 C 0.04 0.87 3.52 45.02 0.16 1.02 16 14 H 0.08 1.78 7.61 -2.39 -0.02 1.76 16 15 C -0.13 -2.26 7.84 31.24 0.25 -2.01 16 16 C 0.01 0.10 7.76 86.40 0.67 0.78 16 17 N -0.46 -11.83 6.16 -858.64 -5.29 -17.12 16 18 C -0.02 -0.49 5.09 44.91 0.23 -0.26 16 19 C -0.17 -4.93 10.46 30.59 0.32 -4.61 16 20 C -0.16 -3.51 10.19 30.59 0.31 -3.20 16 21 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 22 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 23 H -0.01 -0.58 8.14 -2.39 -0.02 -0.59 16 24 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 26 H 0.33 12.22 8.73 -89.69 -0.78 11.44 16 27 H 0.06 1.99 7.91 -2.39 -0.02 1.97 16 28 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 1.63 7.94 -2.39 -0.02 1.61 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.26 7.92 -2.39 -0.02 1.24 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.09 2.19 7.64 -2.39 -0.02 2.18 16 34 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 Total: -1.00 -66.70 306.21 -2.28 -68.98 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.24 Total: 18.12 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: 3.77 Total: -30.41 kcal Atomic # 7 Polarization: -95.63 SS G_CDS: -8.31 Total: -103.94 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -66.70 -2.28 -68.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691662600.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.883 kcal (2) G-P(sol) polarization free energy of solvation -66.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds