Wall clock time and date at job start Mon Mar 30 2020 03:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.33648 * 2 1 4 4 C 1.54913 * 110.37199 * 122.36582 * 2 1 3 5 5 C 1.55137 * 101.65158 * 155.89764 * 4 2 1 6 6 H 1.09004 * 110.85540 * 82.80737 * 5 4 2 7 7 N 1.46906 * 110.70621 * 205.96607 * 5 4 2 8 8 C 1.54320 * 103.02266 * 324.35100 * 5 4 2 9 9 N 1.47438 * 107.23228 * 22.28077 * 8 5 4 10 10 C 1.46902 * 110.99729 * 123.25605 * 9 8 5 11 11 C 1.52998 * 109.47025 * 56.21417 * 10 9 8 12 12 C 1.50694 * 115.55336 * 268.77533 * 11 10 9 13 13 H 1.07994 * 120.00816 * 144.65468 * 12 11 10 14 14 C 1.37884 * 119.99567 * 324.65430 * 12 11 10 15 15 N 1.31510 * 120.00108 * 338.09665 * 14 12 11 16 16 Si 1.86805 * 119.99967 * 158.09374 * 14 12 11 17 17 H 1.48497 * 109.46804 * 89.99897 * 16 14 12 18 18 H 1.48498 * 109.47166 * 209.99903 * 16 14 12 19 19 H 1.48501 * 109.46966 * 329.99900 * 16 14 12 20 20 C 1.53005 * 117.50133 * 123.06526 * 11 10 9 21 21 C 1.53001 * 60.00092 * 252.50966 * 20 11 10 22 22 H 1.09000 * 109.47368 * 182.25446 * 1 2 3 23 23 H 1.08998 * 109.47245 * 302.25826 * 1 2 3 24 24 H 1.09000 * 109.46404 * 62.25849 * 1 2 3 25 25 H 1.08998 * 110.99367 * 273.99453 * 4 2 1 26 26 H 1.09003 * 110.98443 * 37.81088 * 4 2 1 27 27 H 1.00897 * 111.00016 * 175.05504 * 7 5 4 28 28 H 1.00897 * 110.99666 * 299.01070 * 7 5 4 29 29 H 1.08998 * 109.88661 * 262.87641 * 8 5 4 30 30 H 1.09002 * 110.02216 * 141.76713 * 8 5 4 31 31 H 1.09002 * 109.46865 * 176.20919 * 10 9 8 32 32 H 1.08997 * 109.47333 * 296.20998 * 10 9 8 33 33 H 0.97001 * 120.00356 * 185.27732 * 15 14 12 34 34 H 1.09005 * 117.49630 * 359.97438 * 20 11 10 35 35 H 1.08992 * 117.50171 * 145.01889 * 20 11 10 36 36 H 1.08997 * 117.49961 * 252.51099 * 21 20 11 37 37 H 1.09000 * 117.50021 * 107.48731 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 6 2.0693 -0.7774 1.2266 5 6 3.4785 -1.2003 0.7348 6 1 4.1965 -0.3918 0.8728 7 7 3.9277 -2.4151 1.4279 8 6 3.2535 -1.4800 -0.7661 9 7 2.0448 -0.7398 -1.1720 10 6 2.3359 0.1739 -2.2848 11 6 2.9339 -0.6164 -3.4505 12 6 4.4373 -0.7185 -3.4632 13 1 4.9144 -1.6210 -3.8157 14 6 5.2039 0.3404 -3.0247 15 7 4.6987 1.5544 -3.0057 16 14 6.9600 0.0504 -2.4576 17 1 7.8819 0.1840 -3.6140 18 1 7.3173 1.0523 -1.4214 19 1 7.0766 -1.3155 -1.8867 20 6 2.2196 -0.5327 -4.8010 21 6 2.1400 -1.8160 -3.9717 22 1 -0.3634 -1.0268 0.0404 23 1 -0.3633 0.5485 0.8690 24 1 -0.3632 0.4784 -0.9096 25 1 2.1387 -0.1291 2.1001 26 1 1.4514 -1.6501 1.4381 27 1 4.8073 -2.7399 1.0551 28 1 3.9916 -2.2609 2.4230 29 1 3.1055 -2.5480 -0.9261 30 1 4.1114 -1.1342 -1.3429 31 1 1.4142 0.6574 -2.6086 32 1 3.0475 0.9314 -1.9564 33 1 5.2601 2.3098 -2.7706 34 1 1.3235 0.0851 -4.8589 35 1 2.8372 -0.5512 -5.6989 36 1 2.7051 -2.6788 -4.3241 37 1 1.1917 -2.0422 -3.4842 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702636632.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:50 Heat of formation + Delta-G solvation = 30.408126 kcal Electronic energy + Delta-G solvation = -16633.241692 eV Core-core repulsion = 14218.021221 eV Total energy + Delta-G solvation = -2415.220471 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.79867 -36.20513 -33.38098 -32.28258 -30.70353 -28.19448 -25.79641 -25.36201 -23.50306 -21.02370 -20.07574 -19.49465 -18.55918 -16.24564 -15.75952 -14.96640 -14.82824 -14.48996 -13.85879 -13.50338 -13.35882 -12.69212 -12.45958 -11.89470 -11.80762 -11.64648 -11.17976 -11.01074 -10.86276 -10.64232 -10.54813 -10.38988 -10.28921 -10.13364 -9.84869 -9.11735 -9.01413 -8.59295 -8.46604 -8.12773 -7.14669 -6.14546 -4.07466 3.16981 3.26560 3.30805 4.28508 4.68471 4.84496 4.99223 5.13739 5.32610 5.60826 5.72381 5.84629 5.92690 6.00625 6.16248 6.21051 6.27042 6.37493 6.54389 6.58067 6.68119 6.71643 6.79034 6.91840 7.01806 7.02596 7.17730 7.21417 7.50737 7.51015 7.57482 7.70206 7.89185 8.09770 8.24552 8.47900 8.85008 9.42185 10.86046 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.020828 B = 0.013299 C = 0.009934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.042109 B = 2104.877100 C = 2817.913343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.065 3.935 3 H 0.046 0.954 4 C -0.115 4.115 5 C 0.061 3.939 6 H 0.034 0.966 7 N -0.838 5.838 8 C 0.043 3.957 9 N -0.517 5.517 10 C 0.080 3.920 11 C 0.055 3.945 12 C -0.487 4.487 13 H 0.062 0.938 14 C 0.072 3.928 15 N -0.866 5.866 16 Si 0.873 3.127 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.269 1.269 20 C -0.205 4.205 21 C -0.192 4.192 22 H 0.057 0.943 23 H 0.046 0.954 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.079 0.921 27 H 0.340 0.660 28 H 0.332 0.668 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.262 0.738 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.098 -2.309 7.504 8.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.044 4.044 3 H 0.064 0.936 4 C -0.153 4.153 5 C -0.051 4.051 6 H 0.052 0.948 7 N -0.367 5.367 8 C -0.085 4.085 9 N -0.242 5.242 10 C -0.047 4.047 11 C 0.055 3.945 12 C -0.524 4.524 13 H 0.080 0.920 14 C -0.131 4.131 15 N -0.503 5.503 16 Si 0.700 3.300 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.194 1.194 20 C -0.244 4.244 21 C -0.229 4.229 22 H 0.076 0.924 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.153 0.847 28 H 0.143 0.857 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.113 -2.775 7.140 8.695 hybrid contribution 2.389 1.156 0.713 2.748 sum -1.724 -1.619 7.853 8.201 Atomic orbital electron populations 1.21640 0.94880 1.01616 1.00495 1.22468 0.95477 0.96020 0.90432 0.93553 1.22756 0.96009 0.99778 0.96755 1.22726 0.95326 0.90228 0.96827 0.94816 1.58755 1.36854 1.33721 1.07376 1.23068 0.94812 0.99519 0.91133 1.63528 1.28916 1.26259 1.05468 1.21951 0.97954 0.94320 0.90500 1.18874 0.92240 0.94091 0.89326 1.20536 0.89033 1.00674 1.42136 0.92023 1.24954 0.97854 0.94900 0.95426 1.69980 1.36021 0.98069 1.46186 0.86887 0.85471 0.78479 0.79210 1.20432 1.21078 1.19363 1.22981 1.02134 1.00891 0.98362 1.22699 1.01905 0.92017 1.06301 0.92390 0.93489 0.92882 0.92499 0.90196 0.84732 0.85658 0.91208 0.88315 0.94306 0.90036 0.92772 0.92057 0.90848 0.91389 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 9.59 37.16 0.36 -1.63 16 2 C 0.07 1.17 3.05 -66.18 -0.20 0.97 16 3 H 0.05 0.89 7.73 -51.93 -0.40 0.49 16 4 C -0.11 -1.84 6.17 -24.59 -0.15 -1.99 16 5 C 0.06 1.07 4.08 -65.89 -0.27 0.80 16 6 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 7 N -0.84 -12.43 9.27 -3.12 -0.03 -12.46 16 8 C 0.04 0.89 5.97 -2.84 -0.02 0.87 16 9 N -0.52 -10.77 4.69 -223.38 -1.05 -11.81 16 10 C 0.08 1.88 4.64 -3.82 -0.02 1.86 16 11 C 0.06 1.37 1.33 -155.66 -0.21 1.16 16 12 C -0.49 -12.84 7.00 -34.44 -0.24 -13.08 16 13 H 0.06 1.65 7.91 -52.49 -0.42 1.23 16 14 C 0.07 1.89 4.25 -17.82 -0.08 1.81 16 15 N -0.87 -23.49 11.22 55.43 0.62 -22.87 16 16 Si 0.87 20.06 29.57 -169.99 -5.03 15.03 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 20 C -0.21 -4.83 9.88 -26.73 -0.26 -5.09 16 21 C -0.19 -4.34 9.72 -26.73 -0.26 -4.60 16 22 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.08 1.28 8.05 -51.93 -0.42 0.86 16 27 H 0.34 4.84 9.07 -39.29 -0.36 4.49 16 28 H 0.33 4.10 9.07 -39.29 -0.36 3.74 16 29 H 0.07 1.50 8.03 -51.93 -0.42 1.08 16 30 H 0.10 2.34 4.36 -51.93 -0.23 2.11 16 31 H 0.04 0.91 7.87 -51.93 -0.41 0.50 16 32 H 0.08 2.13 5.24 -51.93 -0.27 1.86 16 33 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 34 H 0.06 1.37 8.03 -51.93 -0.42 0.95 16 35 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 36 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 37 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 290.53 15.07 4.38 4.38 Total: -1.00 -26.77 290.53 -8.65 -35.42 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -6.20 Total: 11.23 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -1.35 Total: -18.92 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -0.45 Total: -47.15 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -26.77 -8.65 -35.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702636632.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.829 kcal (2) G-P(sol) polarization free energy of solvation -26.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds