Wall clock time and date at job start Mon Mar 30 2020 02:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.49634 * 107.77107 * 2 1 4 4 N 1.49779 * 105.05103 * 281.35128 * 3 2 1 5 5 C 1.50103 * 107.62626 * 353.96267 * 4 3 2 6 6 C 1.51377 * 102.36966 * 334.19716 * 5 4 3 7 7 C 1.53001 * 111.21745 * 287.67678 * 6 5 4 8 8 C 1.51384 * 124.03782 * 150.74290 * 6 5 4 9 9 N 1.50107 * 102.36994 * 208.44128 * 8 6 5 10 10 C 1.46902 * 111.00289 * 147.44833 * 9 8 6 11 11 C 1.50703 * 109.47082 * 170.00199 * 10 9 8 12 12 H 1.07995 * 119.99914 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99363 * 179.72876 * 11 10 9 14 14 N 1.31520 * 119.99525 * 180.27782 * 13 11 10 15 15 Si 1.86801 * 120.00685 * 0.26933 * 13 11 10 16 16 H 1.48498 * 109.47187 * 90.00235 * 15 13 11 17 17 H 1.48498 * 109.47477 * 210.00844 * 15 13 11 18 18 H 1.48508 * 109.46687 * 330.00535 * 15 13 11 19 19 C 1.49472 * 107.90364 * 144.30546 * 2 1 3 20 20 H 1.09001 * 109.47306 * 168.74022 * 1 2 3 21 21 H 1.08995 * 109.47215 * 288.74732 * 1 2 3 22 22 H 1.09007 * 109.46991 * 48.74387 * 1 2 3 23 23 H 1.08996 * 109.57033 * 162.73344 * 3 2 1 24 24 H 1.08999 * 110.88906 * 40.64271 * 3 2 1 25 25 H 1.00903 * 110.99646 * 232.30647 * 4 3 2 26 26 H 1.09008 * 110.82425 * 215.98296 * 5 4 3 27 27 H 1.08996 * 111.00010 * 92.50125 * 5 4 3 28 28 H 1.09003 * 109.47197 * 278.38452 * 7 6 5 29 29 H 1.09001 * 109.46849 * 38.37948 * 7 6 5 30 30 H 1.08999 * 109.46973 * 158.38248 * 7 6 5 31 31 H 1.08995 * 110.82437 * 90.22060 * 8 6 5 32 32 H 1.08997 * 110.82358 * 326.65628 * 8 6 5 33 33 H 1.08995 * 109.46776 * 49.99878 * 10 9 8 34 34 H 1.09004 * 109.46865 * 289.99890 * 10 9 8 35 35 H 0.97002 * 119.99585 * 179.97438 * 14 13 11 36 36 H 1.09004 * 110.41645 * 318.77562 * 19 2 1 37 37 H 1.09003 * 110.41818 * 196.32803 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 1.9867 1.4249 0.0000 4 7 1.8343 1.8822 -1.4181 5 6 1.4400 0.6899 -2.2403 6 6 2.0066 -0.4605 -1.4358 7 6 3.5323 -0.5102 -1.5396 8 6 1.4134 -1.8531 -1.4148 9 7 1.8080 -2.3502 -0.0545 10 6 0.7897 -3.2583 0.4900 11 6 1.3234 -3.9248 1.7317 12 1 2.3195 -3.6970 2.0812 13 6 0.5380 -4.8216 2.4244 14 7 1.0017 -5.3992 3.5111 15 14 -1.1848 -5.2162 1.8195 16 1 -1.1293 -6.3681 0.8840 17 1 -2.0493 -5.5598 2.9770 18 1 -1.7454 -4.0342 1.1167 19 6 1.9895 -1.1551 0.8299 20 1 -0.3634 -1.0079 -0.2007 21 1 -0.3633 0.3303 0.9731 22 1 -0.3633 0.6777 -0.7726 23 1 3.0321 1.4733 0.3048 24 1 1.3695 2.0309 0.6633 25 1 2.6913 2.2902 -1.7605 26 1 1.8964 0.7330 -3.2293 27 1 0.3557 0.6109 -2.3189 28 1 3.8174 -1.0074 -2.4668 29 1 3.9301 0.5046 -1.5344 30 1 3.9363 -1.0632 -0.6917 31 1 1.8524 -2.4731 -2.1964 32 1 0.3286 -1.8137 -1.5134 33 1 0.5449 -4.0171 -0.2532 34 1 -0.1072 -2.6910 0.7390 35 1 0.4490 -6.0299 3.9987 36 1 1.3752 -1.2480 1.7256 37 1 3.0393 -1.0367 1.0984 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705687223.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:03 Heat of formation + Delta-G solvation = 21.479581 kcal Electronic energy + Delta-G solvation = -16722.646476 eV Core-core repulsion = 14307.038835 eV Total energy + Delta-G solvation = -2415.607642 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.62799 -37.36660 -34.80024 -32.80957 -32.29773 -29.44508 -29.08603 -27.33313 -25.84019 -24.54385 -22.13910 -21.01138 -19.47044 -18.66868 -17.17831 -16.79002 -16.51391 -16.17020 -15.89280 -15.12926 -14.68136 -14.49138 -13.91394 -13.59006 -13.52562 -13.25958 -13.14375 -12.94349 -12.83169 -12.74386 -12.55940 -12.25285 -12.00988 -11.82339 -11.64710 -11.47050 -11.23592 -10.82333 -10.71137 -9.52959 -9.01128 -8.31243 -6.34250 1.31122 1.32382 1.42840 2.30982 2.87113 3.01773 3.11379 3.28233 3.65341 4.08783 4.15622 4.20202 4.30843 4.31547 4.60414 4.62593 4.67115 4.69095 4.75504 4.79739 4.87968 4.90124 4.96256 5.01310 5.06508 5.10305 5.22751 5.31701 5.33731 5.50370 5.52713 5.64685 5.95572 6.13845 6.49059 6.57796 6.71755 7.29260 8.85745 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.045420 B = 0.008012 C = 0.007849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.321775 B = 3494.127330 C = 3566.634007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.081 3.919 4 N -0.673 5.673 5 C 0.071 3.929 6 C -0.106 4.106 7 C -0.124 4.124 8 C 0.053 3.947 9 N -0.525 5.525 10 C 0.168 3.832 11 C -0.515 4.515 12 H 0.034 0.966 13 C 0.008 3.992 14 N -0.948 5.948 15 Si 0.946 3.054 16 H -0.264 1.264 17 H -0.280 1.280 18 H -0.253 1.253 19 C 0.085 3.915 20 H 0.039 0.961 21 H 0.047 0.953 22 H 0.080 0.920 23 H 0.059 0.941 24 H 0.080 0.920 25 H 0.348 0.652 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.050 0.950 33 H 0.023 0.977 34 H -0.008 1.008 35 H 0.267 0.733 36 H 0.038 0.962 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.045 14.036 -12.565 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 C -0.048 4.048 4 N -0.303 5.303 5 C -0.058 4.058 6 C -0.108 4.108 7 C -0.182 4.182 8 C -0.074 4.074 9 N -0.249 5.249 10 C 0.040 3.960 11 C -0.553 4.553 12 H 0.052 0.948 13 C -0.189 4.189 14 N -0.589 5.589 15 Si 0.769 3.231 16 H -0.189 1.189 17 H -0.206 1.206 18 H -0.177 1.177 19 C -0.043 4.043 20 H 0.058 0.942 21 H 0.066 0.934 22 H 0.099 0.901 23 H 0.077 0.923 24 H 0.098 0.902 25 H 0.164 0.836 26 H 0.109 0.891 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.041 0.959 34 H 0.009 0.991 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.287 13.908 -12.389 18.628 hybrid contribution -0.508 -1.005 0.630 1.290 sum -0.794 12.903 -11.759 17.475 Atomic orbital electron populations 1.22324 0.94806 1.01380 1.02112 1.21743 0.96921 0.95877 0.97322 1.21574 1.00437 0.91509 0.91315 1.63294 1.38435 1.27571 1.00950 1.22357 1.00947 0.86512 0.95958 1.22500 0.97316 0.94795 0.96158 1.21635 0.92644 1.01631 1.02242 1.22583 0.98353 0.94784 0.91713 1.65084 1.44354 1.13879 1.01576 1.20073 0.89943 0.92009 0.93963 1.21244 1.01140 1.24027 1.08908 0.94751 1.25843 1.02786 0.95486 0.94788 1.70055 1.39318 1.30443 1.19045 0.85731 0.79286 0.79621 0.78414 1.18928 1.20584 1.17684 1.21570 1.00029 0.88100 0.94644 0.94180 0.93376 0.90108 0.92269 0.90183 0.83561 0.89144 0.90126 0.91616 0.91740 0.93414 0.90294 0.93219 0.95883 0.99087 0.92413 0.94339 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.47 7.31 71.98 0.53 -3.94 16 2 C -0.12 -3.39 1.31 -52.56 -0.07 -3.46 16 3 C 0.08 1.87 6.10 84.66 0.52 2.39 16 4 N -0.67 -13.15 7.16 -507.39 -3.63 -16.78 16 5 C 0.07 1.44 6.27 85.14 0.53 1.97 16 6 C -0.11 -2.71 1.05 -51.41 -0.05 -2.77 16 7 C -0.12 -2.99 8.26 71.98 0.59 -2.40 16 8 C 0.05 1.72 5.46 85.15 0.46 2.18 16 9 N -0.52 -21.92 4.91 -893.72 -4.39 -26.31 16 10 C 0.17 8.21 3.21 85.56 0.27 8.48 16 11 C -0.51 -30.50 9.15 25.60 0.23 -30.26 16 12 H 0.03 2.28 8.05 -2.91 -0.02 2.26 16 13 C 0.01 0.49 5.47 84.65 0.46 0.95 16 14 N -0.95 -60.19 13.96 21.45 0.30 -59.89 16 15 Si 0.95 44.79 27.47 68.60 1.88 46.68 16 16 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 17 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 18 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 19 C 0.08 3.25 4.96 84.61 0.42 3.67 16 20 H 0.04 1.36 3.98 -2.39 -0.01 1.35 16 21 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 22 H 0.08 2.10 5.70 -2.38 -0.01 2.09 16 23 H 0.06 1.28 7.76 -2.39 -0.02 1.26 16 24 H 0.08 1.85 7.95 -2.39 -0.02 1.84 16 25 H 0.35 5.40 8.37 -89.69 -0.75 4.64 16 26 H 0.09 1.45 8.12 -2.38 -0.02 1.43 16 27 H 0.08 1.71 6.23 -2.39 -0.01 1.70 16 28 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 1.26 6.55 -2.39 -0.02 1.24 16 30 H 0.05 1.42 6.29 -2.39 -0.02 1.41 16 31 H 0.08 2.42 8.13 -2.39 -0.02 2.41 16 32 H 0.05 1.60 5.91 -2.39 -0.01 1.59 16 33 H 0.02 1.12 7.52 -2.39 -0.02 1.10 16 34 H -0.01 -0.41 5.66 -2.38 -0.01 -0.43 16 35 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 36 H 0.04 1.71 7.15 -2.38 -0.02 1.69 16 37 H 0.06 2.36 7.22 -2.39 -0.02 2.35 16 Total: -1.00 -66.14 267.98 -1.68 -67.82 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.26 Total: 11.67 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 3.90 Total: -23.19 kcal Atomic # 7 Polarization: -95.26 SS G_CDS: -7.72 Total: -102.98 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.68 kcal Total: -66.14 -1.68 -67.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705687223.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.300 kcal (2) G-P(sol) polarization free energy of solvation -66.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds