Wall clock time and date at job start Mon Mar 30 2020 02:55:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52999 * 109.47121 * 2 1
4 4 H 1.08996 * 109.47144 * 300.10295 * 3 2 1
5 5 C 1.50699 * 109.46962 * 180.10645 * 3 2 1
6 6 H 1.08004 * 120.00432 * 271.96158 * 5 3 2
7 7 C 1.37883 * 120.00231 * 91.96345 * 5 3 2
8 8 N 1.31508 * 119.99561 * 351.32611 * 7 5 3
9 9 Si 1.86797 * 120.00102 * 171.32374 * 7 5 3
10 10 H 1.48503 * 109.47100 * 60.00078 * 9 7 5
11 11 H 1.48499 * 109.47081 * 299.99888 * 9 7 5
12 12 H 1.48507 * 109.46937 * 180.02562 * 9 7 5
13 13 N 1.46891 * 109.47191 * 60.10797 * 3 2 1
14 14 C 1.48873 * 110.99864 * 275.58515 * 13 3 2
15 15 H 1.08999 * 112.43873 * 45.83637 * 14 13 3
16 16 C 1.54696 * 103.99471 * 283.95546 * 14 13 3
17 17 C 1.54329 * 104.72255 * 334.05911 * 16 14 13
18 18 C 1.48870 * 111.00184 * 161.70455 * 13 3 2
19 19 H 1.08997 * 112.43901 * 313.48832 * 18 13 3
20 20 C 1.55319 * 106.14778 * 190.18276 * 18 13 3
21 21 N 1.46954 * 108.85683 * 296.02559 * 20 18 13
22 22 C 1.46954 * 111.65523 * 55.59844 * 21 20 18
23 23 H 1.09000 * 109.47249 * 49.78606 * 1 2 3
24 24 H 1.08998 * 109.47094 * 169.79068 * 1 2 3
25 25 H 1.09006 * 109.46617 * 289.78632 * 1 2 3
26 26 H 1.09002 * 109.47195 * 239.99970 * 2 1 3
27 27 H 1.08995 * 109.47441 * 120.00214 * 2 1 3
28 28 H 0.97001 * 120.00770 * 3.57902 * 8 7 5
29 29 H 1.08997 * 110.38826 * 92.87320 * 16 14 13
30 30 H 1.09005 * 110.38131 * 215.24996 * 16 14 13
31 31 H 1.09003 * 110.38647 * 241.18691 * 17 16 14
32 32 H 1.09005 * 110.48242 * 118.86482 * 17 16 14
33 33 H 1.09002 * 109.39537 * 176.34104 * 20 18 13
34 34 H 1.08997 * 109.90420 * 56.01768 * 20 18 13
35 35 H 1.00896 * 111.00323 * 291.16370 * 21 20 18
36 36 H 1.09008 * 109.55160 * 184.81700 * 22 21 20
37 37 H 1.08998 * 109.55889 * 64.50602 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6751 1.9568 -0.8890
5 6 3.5470 1.4425 -0.0026
6 1 4.0887 1.4098 0.9311
7 6 4.2343 1.4841 -1.1972
8 7 3.5860 1.3519 -2.3337
9 14 6.0863 1.7282 -1.2011
10 1 6.7332 0.6202 -0.4534
11 1 6.4163 3.0224 -0.5521
12 1 6.5814 1.7367 -2.6012
13 7 1.5525 2.1342 1.2007
14 6 0.1811 2.6724 0.9864
15 1 -0.4821 1.9463 0.5162
16 6 0.4040 3.9247 0.1060
17 6 1.8430 4.3797 0.4283
18 6 2.3534 3.3592 1.4728
19 1 3.4261 3.1791 1.4027
20 6 1.9262 3.8501 2.8831
21 7 0.5083 4.2343 2.8430
22 6 -0.3379 3.1350 2.3581
23 1 -0.3634 0.6635 -0.7848
24 1 -0.3633 -1.0114 -0.1821
25 1 -0.3633 0.3479 0.9671
26 1 1.8933 -0.5138 -0.8900
27 1 1.8933 -0.5138 0.8899
28 1 2.6189 1.2773 -2.3347
29 1 0.3143 3.6677 -0.9494
30 1 -0.3092 4.7058 0.3694
31 1 1.8380 5.3847 0.8502
32 1 2.4628 4.3480 -0.4678
33 1 2.5301 4.7128 3.1645
34 1 2.0676 3.0524 3.6123
35 1 0.3745 5.0657 2.2874
36 1 -1.3666 3.4821 2.2608
37 1 -0.2965 2.3045 3.0628
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000723843222.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:55:13
Heat of formation + Delta-G solvation = 11.110809 kcal
Electronic energy + Delta-G solvation = -17127.040391 eV
Core-core repulsion = 14710.983126 eV
Total energy + Delta-G solvation = -2416.057265 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 224.158 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-40.23187 -35.33471 -32.51278 -31.98157 -30.58025 -29.25682 -26.50196 -24.21399
-23.66555 -22.63922 -20.01730 -19.75981 -18.65518 -16.76623 -16.14226 -15.28019
-14.31910 -13.90233 -13.76384 -13.50923 -13.30885 -12.73780 -12.50395 -12.29158
-12.02890 -11.80153 -11.29338 -10.95875 -10.81528 -10.65643 -10.53041 -10.44335
-10.23156 -10.11182 -9.95091 -9.84255 -9.62198 -8.67553 -8.24031 -7.98392
-7.33753 -6.41847 -4.10084 3.39833 3.40108 3.59090 4.46212 4.71079
4.74809 5.29561 5.34322 5.37492 5.55045 5.61490 5.78067 5.88588
5.97388 6.00322 6.02800 6.09243 6.17056 6.21919 6.27011 6.40984
6.47892 6.53054 6.70829 6.72117 6.78516 6.91922 7.06811 7.15432
7.40506 7.50147 7.70790 7.77635 8.04927 8.33652 8.55530 8.83227
9.61207 10.96749
Molecular weight = 224.16amu
Principal moments of inertia in cm(-1)
A = 0.029034 B = 0.011789 C = 0.009771
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 964.167095 B = 2374.605672 C = 2864.991125
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.101 4.101
3 C 0.187 3.813
4 H 0.013 0.987
5 C -0.589 4.589
6 H 0.054 0.946
7 C 0.022 3.978
8 N -0.909 5.909
9 Si 1.064 2.936
10 H -0.287 1.287
11 H -0.288 1.288
12 H -0.284 1.284
13 N -0.490 5.490
14 C 0.003 3.997
15 H 0.102 0.898
16 C -0.148 4.148
17 C -0.143 4.143
18 C 0.041 3.959
19 H 0.114 0.886
20 C 0.066 3.934
21 N -0.689 5.689
22 C 0.073 3.927
23 H 0.040 0.960
24 H 0.034 0.966
25 H 0.056 0.944
26 H 0.051 0.949
27 H 0.050 0.950
28 H 0.269 0.731
29 H 0.059 0.941
30 H 0.056 0.944
31 H 0.053 0.947
32 H 0.068 0.932
33 H 0.064 0.936
34 H 0.075 0.925
35 H 0.332 0.668
36 H 0.063 0.937
37 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.571 4.345 5.982 9.257
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.140 4.140
3 C 0.080 3.920
4 H 0.031 0.969
5 C -0.628 4.628
6 H 0.073 0.927
7 C -0.183 4.183
8 N -0.545 5.545
9 Si 0.892 3.108
10 H -0.214 1.214
11 H -0.214 1.214
12 H -0.209 1.209
13 N -0.213 5.213
14 C -0.108 4.108
15 H 0.120 0.880
16 C -0.188 4.188
17 C -0.183 4.183
18 C -0.069 4.069
19 H 0.131 0.869
20 C -0.064 4.064
21 N -0.318 5.318
22 C -0.057 4.057
23 H 0.059 0.941
24 H 0.053 0.947
25 H 0.075 0.925
26 H 0.069 0.931
27 H 0.069 0.931
28 H 0.080 0.920
29 H 0.077 0.923
30 H 0.074 0.926
31 H 0.072 0.928
32 H 0.087 0.913
33 H 0.082 0.918
34 H 0.094 0.906
35 H 0.150 0.850
36 H 0.081 0.919
37 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -4.323 3.852 6.106 8.415
hybrid contribution -1.157 0.451 -0.889 1.527
sum -5.480 4.303 5.217 8.704
Atomic orbital electron populations
1.22098 0.99131 0.99331 1.00476 1.21566 0.92083 0.99809 1.00533
1.19552 0.95332 0.89963 0.87153 0.96896 1.21854 0.90507 1.55490
0.94936 0.92730 1.25761 1.06664 0.93614 0.92234 1.70808 1.10417
1.45441 1.27846 0.83610 0.74656 0.76597 0.75934 1.21386 1.21424
1.20910 1.65631 0.99347 1.18991 1.37370 1.24315 0.95398 0.95218
0.95851 0.88012 1.22888 0.96846 0.98415 1.00609 1.22809 0.95950
0.98626 1.00868 1.24038 1.00931 0.88791 0.93161 0.86868 1.22519
0.87687 0.99595 0.96631 1.60610 1.07404 1.06680 1.57085 1.22107
0.95130 0.94096 0.94411 0.94063 0.94722 0.92540 0.93076 0.93070
0.91953 0.92259 0.92564 0.92827 0.91300 0.91801 0.90633 0.85008
0.91899 0.90657
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.86 8.19 37.16 0.30 -2.56 16
2 C -0.10 -2.29 5.63 -26.73 -0.15 -2.44 16
3 C 0.19 4.46 1.16 -68.87 -0.08 4.38 16
4 H 0.01 0.35 5.36 -51.93 -0.28 0.07 16
5 C -0.59 -15.63 6.59 -34.44 -0.23 -15.86 16
6 H 0.05 1.48 7.14 -52.48 -0.37 1.11 16
7 C 0.02 0.61 5.44 -17.82 -0.10 0.51 16
8 N -0.91 -26.53 13.61 55.43 0.75 -25.77 16
9 Si 1.06 24.57 29.91 -169.99 -5.08 19.48 16
10 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16
11 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16
12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
13 N -0.49 -10.15 4.77 -205.10 -0.98 -11.13 16
14 C 0.00 0.05 2.84 -65.32 -0.19 -0.13 16
15 H 0.10 1.80 4.15 -51.93 -0.22 1.59 16
16 C -0.15 -2.59 5.26 -25.14 -0.13 -2.72 16
17 C -0.14 -2.66 5.54 -25.15 -0.14 -2.80 16
18 C 0.04 0.81 3.36 -64.50 -0.22 0.59 16
19 H 0.11 2.51 6.00 -51.93 -0.31 2.20 16
20 C 0.07 1.09 6.33 -2.56 -0.02 1.07 16
21 N -0.69 -10.56 6.76 -111.89 -0.76 -11.32 16
22 C 0.07 1.13 6.26 -3.39 -0.02 1.11 16
23 H 0.04 0.76 7.36 -51.93 -0.38 0.38 16
24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16
25 H 0.06 1.00 6.32 -51.93 -0.33 0.67 16
26 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16
27 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16
28 H 0.27 7.88 6.72 -40.82 -0.27 7.60 16
29 H 0.06 1.13 7.74 -51.93 -0.40 0.72 16
30 H 0.06 0.84 7.24 -51.93 -0.38 0.47 16
31 H 0.05 0.86 7.28 -51.93 -0.38 0.48 16
32 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16
33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16
34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16
35 H 0.33 4.80 6.39 -39.29 -0.25 4.54 16
36 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16
37 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16
LS Contribution 269.80 15.07 4.07 4.07
Total: -1.00 -27.72 269.80 -8.71 -36.43
By element:
Atomic # 1 Polarization: 12.84 SS G_CDS: -5.75 Total: 7.09 kcal
Atomic # 6 Polarization: -17.88 SS G_CDS: -0.96 Total: -18.84 kcal
Atomic # 7 Polarization: -47.24 SS G_CDS: -0.98 Total: -48.22 kcal
Atomic # 14 Polarization: 24.57 SS G_CDS: -5.08 Total: 19.48 kcal
Total LS contribution 4.07 Total: 4.07 kcal
Total: -27.72 -8.71 -36.43 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000723843222.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.542 kcal
(2) G-P(sol) polarization free energy of solvation -27.722 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.820 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.431 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.111 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds