Wall clock time and date at job start Mon Mar 30 2020 02:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47121 * 2 1 4 4 H 1.08996 * 109.47144 * 300.10295 * 3 2 1 5 5 C 1.50699 * 109.46962 * 180.10645 * 3 2 1 6 6 H 1.08004 * 120.00432 * 271.96158 * 5 3 2 7 7 C 1.37883 * 120.00231 * 91.96345 * 5 3 2 8 8 N 1.31508 * 119.99561 * 351.32611 * 7 5 3 9 9 Si 1.86797 * 120.00102 * 171.32374 * 7 5 3 10 10 H 1.48503 * 109.47100 * 60.00078 * 9 7 5 11 11 H 1.48499 * 109.47081 * 299.99888 * 9 7 5 12 12 H 1.48507 * 109.46937 * 180.02562 * 9 7 5 13 13 N 1.46891 * 109.47191 * 60.10797 * 3 2 1 14 14 C 1.48873 * 110.99864 * 275.58515 * 13 3 2 15 15 H 1.08999 * 112.43873 * 45.83637 * 14 13 3 16 16 C 1.54696 * 103.99471 * 283.95546 * 14 13 3 17 17 C 1.54329 * 104.72255 * 334.05911 * 16 14 13 18 18 C 1.48870 * 111.00184 * 161.70455 * 13 3 2 19 19 H 1.08997 * 112.43901 * 313.48832 * 18 13 3 20 20 C 1.55319 * 106.14778 * 190.18276 * 18 13 3 21 21 N 1.46954 * 108.85683 * 296.02559 * 20 18 13 22 22 C 1.46954 * 111.65523 * 55.59844 * 21 20 18 23 23 H 1.09000 * 109.47249 * 49.78606 * 1 2 3 24 24 H 1.08998 * 109.47094 * 169.79068 * 1 2 3 25 25 H 1.09006 * 109.46617 * 289.78632 * 1 2 3 26 26 H 1.09002 * 109.47195 * 239.99970 * 2 1 3 27 27 H 1.08995 * 109.47441 * 120.00214 * 2 1 3 28 28 H 0.97001 * 120.00770 * 3.57902 * 8 7 5 29 29 H 1.08997 * 110.38826 * 92.87320 * 16 14 13 30 30 H 1.09005 * 110.38131 * 215.24996 * 16 14 13 31 31 H 1.09003 * 110.38647 * 241.18691 * 17 16 14 32 32 H 1.09005 * 110.48242 * 118.86482 * 17 16 14 33 33 H 1.09002 * 109.39537 * 176.34104 * 20 18 13 34 34 H 1.08997 * 109.90420 * 56.01768 * 20 18 13 35 35 H 1.00896 * 111.00323 * 291.16370 * 21 20 18 36 36 H 1.09008 * 109.55160 * 184.81700 * 22 21 20 37 37 H 1.08998 * 109.55889 * 64.50602 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6751 1.9568 -0.8890 5 6 3.5470 1.4425 -0.0026 6 1 4.0887 1.4098 0.9311 7 6 4.2343 1.4841 -1.1972 8 7 3.5860 1.3519 -2.3337 9 14 6.0863 1.7282 -1.2011 10 1 6.7332 0.6202 -0.4534 11 1 6.4163 3.0224 -0.5521 12 1 6.5814 1.7367 -2.6012 13 7 1.5525 2.1342 1.2007 14 6 0.1811 2.6724 0.9864 15 1 -0.4821 1.9463 0.5162 16 6 0.4040 3.9247 0.1060 17 6 1.8430 4.3797 0.4283 18 6 2.3534 3.3592 1.4728 19 1 3.4261 3.1791 1.4027 20 6 1.9262 3.8501 2.8831 21 7 0.5083 4.2343 2.8430 22 6 -0.3379 3.1350 2.3581 23 1 -0.3634 0.6635 -0.7848 24 1 -0.3633 -1.0114 -0.1821 25 1 -0.3633 0.3479 0.9671 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.6189 1.2773 -2.3347 29 1 0.3143 3.6677 -0.9494 30 1 -0.3092 4.7058 0.3694 31 1 1.8380 5.3847 0.8502 32 1 2.4628 4.3480 -0.4678 33 1 2.5301 4.7128 3.1645 34 1 2.0676 3.0524 3.6123 35 1 0.3745 5.0657 2.2874 36 1 -1.3666 3.4821 2.2608 37 1 -0.2965 2.3045 3.0628 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723843222.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:13 Heat of formation + Delta-G solvation = 11.110809 kcal Electronic energy + Delta-G solvation = -17127.040391 eV Core-core repulsion = 14710.983126 eV Total energy + Delta-G solvation = -2416.057265 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.23187 -35.33471 -32.51278 -31.98157 -30.58025 -29.25682 -26.50196 -24.21399 -23.66555 -22.63922 -20.01730 -19.75981 -18.65518 -16.76623 -16.14226 -15.28019 -14.31910 -13.90233 -13.76384 -13.50923 -13.30885 -12.73780 -12.50395 -12.29158 -12.02890 -11.80153 -11.29338 -10.95875 -10.81528 -10.65643 -10.53041 -10.44335 -10.23156 -10.11182 -9.95091 -9.84255 -9.62198 -8.67553 -8.24031 -7.98392 -7.33753 -6.41847 -4.10084 3.39833 3.40108 3.59090 4.46212 4.71079 4.74809 5.29561 5.34322 5.37492 5.55045 5.61490 5.78067 5.88588 5.97388 6.00322 6.02800 6.09243 6.17056 6.21919 6.27011 6.40984 6.47892 6.53054 6.70829 6.72117 6.78516 6.91922 7.06811 7.15432 7.40506 7.50147 7.70790 7.77635 8.04927 8.33652 8.55530 8.83227 9.61207 10.96749 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.029034 B = 0.011789 C = 0.009771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.167095 B = 2374.605672 C = 2864.991125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.101 4.101 3 C 0.187 3.813 4 H 0.013 0.987 5 C -0.589 4.589 6 H 0.054 0.946 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 1.064 2.936 10 H -0.287 1.287 11 H -0.288 1.288 12 H -0.284 1.284 13 N -0.490 5.490 14 C 0.003 3.997 15 H 0.102 0.898 16 C -0.148 4.148 17 C -0.143 4.143 18 C 0.041 3.959 19 H 0.114 0.886 20 C 0.066 3.934 21 N -0.689 5.689 22 C 0.073 3.927 23 H 0.040 0.960 24 H 0.034 0.966 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.269 0.731 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.332 0.668 36 H 0.063 0.937 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.571 4.345 5.982 9.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.140 4.140 3 C 0.080 3.920 4 H 0.031 0.969 5 C -0.628 4.628 6 H 0.073 0.927 7 C -0.183 4.183 8 N -0.545 5.545 9 Si 0.892 3.108 10 H -0.214 1.214 11 H -0.214 1.214 12 H -0.209 1.209 13 N -0.213 5.213 14 C -0.108 4.108 15 H 0.120 0.880 16 C -0.188 4.188 17 C -0.183 4.183 18 C -0.069 4.069 19 H 0.131 0.869 20 C -0.064 4.064 21 N -0.318 5.318 22 C -0.057 4.057 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.150 0.850 36 H 0.081 0.919 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.323 3.852 6.106 8.415 hybrid contribution -1.157 0.451 -0.889 1.527 sum -5.480 4.303 5.217 8.704 Atomic orbital electron populations 1.22098 0.99131 0.99331 1.00476 1.21566 0.92083 0.99809 1.00533 1.19552 0.95332 0.89963 0.87153 0.96896 1.21854 0.90507 1.55490 0.94936 0.92730 1.25761 1.06664 0.93614 0.92234 1.70808 1.10417 1.45441 1.27846 0.83610 0.74656 0.76597 0.75934 1.21386 1.21424 1.20910 1.65631 0.99347 1.18991 1.37370 1.24315 0.95398 0.95218 0.95851 0.88012 1.22888 0.96846 0.98415 1.00609 1.22809 0.95950 0.98626 1.00868 1.24038 1.00931 0.88791 0.93161 0.86868 1.22519 0.87687 0.99595 0.96631 1.60610 1.07404 1.06680 1.57085 1.22107 0.95130 0.94096 0.94411 0.94063 0.94722 0.92540 0.93076 0.93070 0.91953 0.92259 0.92564 0.92827 0.91300 0.91801 0.90633 0.85008 0.91899 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.19 37.16 0.30 -2.56 16 2 C -0.10 -2.29 5.63 -26.73 -0.15 -2.44 16 3 C 0.19 4.46 1.16 -68.87 -0.08 4.38 16 4 H 0.01 0.35 5.36 -51.93 -0.28 0.07 16 5 C -0.59 -15.63 6.59 -34.44 -0.23 -15.86 16 6 H 0.05 1.48 7.14 -52.48 -0.37 1.11 16 7 C 0.02 0.61 5.44 -17.82 -0.10 0.51 16 8 N -0.91 -26.53 13.61 55.43 0.75 -25.77 16 9 Si 1.06 24.57 29.91 -169.99 -5.08 19.48 16 10 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.49 -10.15 4.77 -205.10 -0.98 -11.13 16 14 C 0.00 0.05 2.84 -65.32 -0.19 -0.13 16 15 H 0.10 1.80 4.15 -51.93 -0.22 1.59 16 16 C -0.15 -2.59 5.26 -25.14 -0.13 -2.72 16 17 C -0.14 -2.66 5.54 -25.15 -0.14 -2.80 16 18 C 0.04 0.81 3.36 -64.50 -0.22 0.59 16 19 H 0.11 2.51 6.00 -51.93 -0.31 2.20 16 20 C 0.07 1.09 6.33 -2.56 -0.02 1.07 16 21 N -0.69 -10.56 6.76 -111.89 -0.76 -11.32 16 22 C 0.07 1.13 6.26 -3.39 -0.02 1.11 16 23 H 0.04 0.76 7.36 -51.93 -0.38 0.38 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 1.00 6.32 -51.93 -0.33 0.67 16 26 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.27 7.88 6.72 -40.82 -0.27 7.60 16 29 H 0.06 1.13 7.74 -51.93 -0.40 0.72 16 30 H 0.06 0.84 7.24 -51.93 -0.38 0.47 16 31 H 0.05 0.86 7.28 -51.93 -0.38 0.48 16 32 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.33 4.80 6.39 -39.29 -0.25 4.54 16 36 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 269.80 15.07 4.07 4.07 Total: -1.00 -27.72 269.80 -8.71 -36.43 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -5.75 Total: 7.09 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -0.96 Total: -18.84 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -0.98 Total: -48.22 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -5.08 Total: 19.48 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.72 -8.71 -36.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723843222.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.542 kcal (2) G-P(sol) polarization free energy of solvation -27.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds