Wall clock time and date at job start Mon Mar 30 2020 02:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47121 * 2 1 4 4 H 1.08996 * 109.47144 * 300.10295 * 3 2 1 5 5 C 1.50699 * 109.46962 * 180.10645 * 3 2 1 6 6 H 1.08004 * 120.00432 * 271.96158 * 5 3 2 7 7 C 1.37883 * 120.00231 * 91.96345 * 5 3 2 8 8 N 1.31508 * 119.99561 * 351.32611 * 7 5 3 9 9 Si 1.86797 * 120.00102 * 171.32374 * 7 5 3 10 10 H 1.48503 * 109.47100 * 60.00078 * 9 7 5 11 11 H 1.48499 * 109.47081 * 299.99888 * 9 7 5 12 12 H 1.48507 * 109.46937 * 180.02562 * 9 7 5 13 13 N 1.46891 * 109.47191 * 60.10797 * 3 2 1 14 14 C 1.48873 * 110.99864 * 275.58515 * 13 3 2 15 15 H 1.08999 * 112.43873 * 45.83637 * 14 13 3 16 16 C 1.54696 * 103.99471 * 283.95546 * 14 13 3 17 17 C 1.54329 * 104.72255 * 334.05911 * 16 14 13 18 18 C 1.48870 * 111.00184 * 161.70455 * 13 3 2 19 19 H 1.08997 * 112.43901 * 313.48832 * 18 13 3 20 20 C 1.55319 * 106.14778 * 190.18276 * 18 13 3 21 21 N 1.46954 * 108.85683 * 296.02559 * 20 18 13 22 22 C 1.46954 * 111.65523 * 55.59844 * 21 20 18 23 23 H 1.09000 * 109.47249 * 49.78606 * 1 2 3 24 24 H 1.08998 * 109.47094 * 169.79068 * 1 2 3 25 25 H 1.09006 * 109.46617 * 289.78632 * 1 2 3 26 26 H 1.09002 * 109.47195 * 239.99970 * 2 1 3 27 27 H 1.08995 * 109.47441 * 120.00214 * 2 1 3 28 28 H 0.97001 * 120.00770 * 3.57902 * 8 7 5 29 29 H 1.08997 * 110.38826 * 92.87320 * 16 14 13 30 30 H 1.09005 * 110.38131 * 215.24996 * 16 14 13 31 31 H 1.09003 * 110.38647 * 241.18691 * 17 16 14 32 32 H 1.09005 * 110.48242 * 118.86482 * 17 16 14 33 33 H 1.09002 * 109.39537 * 176.34104 * 20 18 13 34 34 H 1.08997 * 109.90420 * 56.01768 * 20 18 13 35 35 H 1.00896 * 111.00323 * 291.16370 * 21 20 18 36 36 H 1.09008 * 109.55160 * 184.81700 * 22 21 20 37 37 H 1.08998 * 109.55889 * 64.50602 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6751 1.9568 -0.8890 5 6 3.5470 1.4425 -0.0026 6 1 4.0887 1.4098 0.9311 7 6 4.2343 1.4841 -1.1972 8 7 3.5860 1.3519 -2.3337 9 14 6.0863 1.7282 -1.2011 10 1 6.7332 0.6202 -0.4534 11 1 6.4163 3.0224 -0.5521 12 1 6.5814 1.7367 -2.6012 13 7 1.5525 2.1342 1.2007 14 6 0.1811 2.6724 0.9864 15 1 -0.4821 1.9463 0.5162 16 6 0.4040 3.9247 0.1060 17 6 1.8430 4.3797 0.4283 18 6 2.3534 3.3592 1.4728 19 1 3.4261 3.1791 1.4027 20 6 1.9262 3.8501 2.8831 21 7 0.5083 4.2343 2.8430 22 6 -0.3379 3.1350 2.3581 23 1 -0.3634 0.6635 -0.7848 24 1 -0.3633 -1.0114 -0.1821 25 1 -0.3633 0.3479 0.9671 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.6189 1.2773 -2.3347 29 1 0.3143 3.6677 -0.9494 30 1 -0.3092 4.7058 0.3694 31 1 1.8380 5.3847 0.8502 32 1 2.4628 4.3480 -0.4678 33 1 2.5301 4.7128 3.1645 34 1 2.0676 3.0524 3.6123 35 1 0.3745 5.0657 2.2874 36 1 -1.3666 3.4821 2.2608 37 1 -0.2965 2.3045 3.0628 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723843222.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:13 Heat of formation + Delta-G solvation = -8.583463 kcal Electronic energy + Delta-G solvation = -17127.894399 eV Core-core repulsion = 14710.983126 eV Total energy + Delta-G solvation = -2416.911273 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.74196 -37.07103 -34.29822 -33.60199 -32.08462 -30.83375 -28.29137 -25.91344 -25.14556 -24.27790 -21.80526 -21.30589 -20.14742 -18.65882 -17.75992 -16.80689 -15.91392 -15.67685 -15.46903 -14.99932 -14.77438 -14.37049 -14.09073 -14.00305 -13.59318 -13.23124 -12.92779 -12.72289 -12.57277 -12.29242 -12.14885 -11.99962 -11.95489 -11.78738 -11.58696 -11.33026 -11.20965 -10.71467 -10.27616 -9.45767 -8.92583 -8.61885 -6.28856 1.48762 1.55133 1.73995 2.53011 3.12234 3.28510 3.42965 3.86757 3.94488 4.05991 4.16120 4.35101 4.39111 4.43837 4.54742 4.61094 4.64617 4.69412 4.75338 4.83977 4.88599 4.99243 5.01044 5.11317 5.15705 5.20143 5.31056 5.33691 5.43301 5.59627 5.91941 6.03107 6.11214 6.39017 6.52912 6.61025 6.74955 7.49453 8.76995 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.029034 B = 0.011789 C = 0.009771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.167095 B = 2374.605672 C = 2864.991125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 C 0.193 3.807 4 H -0.017 1.017 5 C -0.588 4.588 6 H 0.043 0.957 7 C -0.026 4.026 8 N -0.937 5.937 9 Si 1.105 2.895 10 H -0.274 1.274 11 H -0.271 1.271 12 H -0.288 1.288 13 N -0.497 5.497 14 C 0.000 4.000 15 H 0.103 0.897 16 C -0.142 4.142 17 C -0.138 4.138 18 C 0.033 3.967 19 H 0.079 0.921 20 C 0.079 3.921 21 N -0.679 5.679 22 C 0.080 3.920 23 H 0.039 0.961 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.021 0.979 27 H 0.042 0.958 28 H 0.256 0.744 29 H 0.034 0.966 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.026 0.974 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.342 0.658 36 H 0.095 0.905 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.766 5.473 7.753 11.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.137 4.137 3 C 0.085 3.915 4 H 0.001 0.999 5 C -0.627 4.627 6 H 0.062 0.938 7 C -0.225 4.225 8 N -0.575 5.575 9 Si 0.928 3.072 10 H -0.199 1.199 11 H -0.196 1.196 12 H -0.214 1.214 13 N -0.220 5.220 14 C -0.110 4.110 15 H 0.121 0.879 16 C -0.181 4.181 17 C -0.177 4.177 18 C -0.078 4.078 19 H 0.097 0.903 20 C -0.051 4.051 21 N -0.308 5.308 22 C -0.050 4.050 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.040 0.960 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.045 0.955 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.161 0.839 36 H 0.113 0.887 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.536 4.991 7.905 10.865 hybrid contribution -0.810 0.106 -1.400 1.621 sum -6.346 5.096 6.504 10.419 Atomic orbital electron populations 1.21941 0.95641 1.00767 1.01262 1.21423 0.95221 0.98451 0.98574 1.19344 0.93901 0.90784 0.87439 0.99904 1.22103 0.92314 1.54039 0.94215 0.93843 1.27008 1.10269 0.93185 0.92044 1.70926 1.09681 1.48170 1.28719 0.83074 0.70505 0.77710 0.75902 1.19903 1.19624 1.21388 1.65615 1.01250 1.19978 1.35166 1.24464 0.93596 0.95224 0.97713 0.87925 1.22845 0.96780 0.99352 0.99171 1.22734 0.95940 1.00142 0.98903 1.24060 0.99080 0.88814 0.95801 0.90272 1.22391 0.88846 1.00113 0.93792 1.60603 1.06266 1.06916 1.57043 1.22124 0.96564 0.94103 0.92243 0.94183 0.92653 0.91048 0.96037 0.93892 0.93396 0.94711 0.89003 0.89714 0.95504 0.89614 0.91412 0.83898 0.88700 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.05 8.19 71.98 0.59 -4.46 16 2 C -0.10 -4.53 5.63 30.59 0.17 -4.36 16 3 C 0.19 9.49 1.16 44.17 0.05 9.54 16 4 H -0.02 -0.92 5.36 -2.39 -0.01 -0.93 16 5 C -0.59 -32.26 6.59 25.60 0.17 -32.09 16 6 H 0.04 2.43 7.14 -2.91 -0.02 2.41 16 7 C -0.03 -1.49 5.44 84.66 0.46 -1.03 16 8 N -0.94 -56.91 13.61 21.45 0.29 -56.62 16 9 Si 1.11 50.45 29.91 68.60 2.05 52.50 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 12 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 13 N -0.50 -20.42 4.77 -802.82 -3.83 -24.25 16 14 C 0.00 0.01 2.84 45.37 0.13 0.14 16 15 H 0.10 3.43 4.15 -2.39 -0.01 3.42 16 16 C -0.14 -4.73 5.26 31.62 0.17 -4.57 16 17 C -0.14 -5.02 5.54 31.62 0.18 -4.84 16 18 C 0.03 1.29 3.36 45.91 0.15 1.44 16 19 H 0.08 3.59 6.00 -2.39 -0.01 3.58 16 20 C 0.08 2.41 6.33 87.09 0.55 2.96 16 21 N -0.68 -18.08 6.76 -507.93 -3.43 -21.51 16 22 C 0.08 2.16 6.26 86.56 0.54 2.71 16 23 H 0.04 1.45 7.36 -2.39 -0.02 1.43 16 24 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.07 2.38 6.32 -2.38 -0.02 2.37 16 26 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.26 15.78 6.72 -92.71 -0.62 15.16 16 29 H 0.03 1.31 7.74 -2.39 -0.02 1.30 16 30 H 0.09 2.40 7.24 -2.38 -0.02 2.38 16 31 H 0.08 2.51 7.28 -2.39 -0.02 2.49 16 32 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.09 2.26 8.14 -2.39 -0.02 2.25 16 34 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.34 8.22 6.39 -89.70 -0.57 7.65 16 36 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -62.10 269.80 -1.13 -63.23 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.63 Total: 21.21 kcal Atomic # 6 Polarization: -37.73 SS G_CDS: 3.16 Total: -34.57 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -6.97 Total: -102.38 kcal Atomic # 14 Polarization: 50.45 SS G_CDS: 2.05 Total: 52.50 kcal Total: -62.10 -1.13 -63.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723843222.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.651 kcal (2) G-P(sol) polarization free energy of solvation -62.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds