Wall clock time and date at job start Mon Mar 30 2020 02:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 119.99878 * 2 1 4 4 H 1.48505 * 109.47174 * 269.99765 * 3 2 1 5 5 H 1.48500 * 109.47520 * 29.99999 * 3 2 1 6 6 H 1.48510 * 109.47075 * 150.00224 * 3 2 1 7 7 C 1.37876 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99512 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00207 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47195 * 184.83674 * 9 7 2 11 11 C 1.46852 * 110.99960 * 300.24916 * 10 9 7 12 12 C 1.53139 * 109.46553 * 186.31934 * 11 10 9 13 13 C 1.52575 * 109.31054 * 301.67407 * 12 11 10 14 14 C 1.54141 * 110.01972 * 178.00540 * 13 12 11 15 15 C 1.55038 * 102.80572 * 97.40174 * 14 13 12 16 16 N 1.48578 * 103.29599 * 37.01893 * 15 14 13 17 17 C 1.48028 * 105.83057 * 321.06585 * 16 15 14 18 18 C 1.52578 * 110.42074 * 56.37129 * 13 12 11 19 19 C 1.46856 * 110.99925 * 64.56757 * 10 9 7 20 20 H 0.97000 * 120.00242 * 0.02562 * 1 2 3 21 21 H 1.08993 * 109.47434 * 64.83736 * 9 7 2 22 22 H 1.09003 * 109.46974 * 304.83057 * 9 7 2 23 23 H 1.09003 * 109.46738 * 306.31504 * 11 10 9 24 24 H 1.08997 * 109.47719 * 66.31726 * 11 10 9 25 25 H 1.09004 * 109.49573 * 181.72875 * 12 11 10 26 26 H 1.08992 * 109.49819 * 61.62962 * 12 11 10 27 27 H 1.09002 * 110.73976 * 215.72530 * 14 13 12 28 28 H 1.08998 * 110.74534 * 339.06668 * 14 13 12 29 29 H 1.09002 * 110.64923 * 278.56751 * 15 14 13 30 30 H 1.09000 * 110.79743 * 155.54126 * 15 14 13 31 31 H 1.00895 * 111.00172 * 200.54442 * 16 15 14 32 32 H 1.09006 * 109.97351 * 265.88830 * 17 16 15 33 33 H 1.09003 * 109.97787 * 144.60450 * 17 16 15 34 34 H 1.09005 * 109.49516 * 183.67203 * 18 13 12 35 35 H 1.08998 * 109.49728 * 63.58165 * 18 13 12 36 36 H 1.09005 * 109.47160 * 293.67411 * 19 10 9 37 37 H 1.08997 * 109.47428 * 53.68569 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2013 -3.6133 0.1156 11 6 3.1520 -3.6129 -1.0036 12 6 4.0218 -4.8714 -0.9348 13 6 4.7551 -4.9055 0.4028 14 6 5.5976 -6.1918 0.5102 15 6 7.0111 -5.7127 0.0904 16 7 7.0972 -4.3493 0.6744 17 6 5.7579 -3.7462 0.4913 18 6 3.7600 -4.8349 1.5573 19 6 2.8988 -3.5776 1.4075 20 1 -0.4850 0.8400 -0.0004 21 1 0.6905 -2.5952 -0.9304 22 1 0.5613 -2.5205 0.8433 23 1 2.6040 -3.6011 -1.9458 24 1 3.7865 -2.7289 -0.9412 25 1 4.7481 -4.8566 -1.7475 26 1 3.3907 -5.7553 -1.0263 27 1 5.6046 -6.5643 1.5345 28 1 5.2283 -6.9536 -0.1764 29 1 7.0964 -5.6720 -0.9955 30 1 7.7801 -6.3606 0.5112 31 1 7.8068 -3.8016 0.2112 32 1 5.7349 -3.1627 -0.4292 33 1 5.5167 -3.1093 1.3424 34 1 4.3016 -4.7944 2.5024 35 1 3.1210 -5.7177 1.5413 36 1 3.5352 -2.6938 1.4525 37 1 2.1671 -3.5401 2.2146 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885645312.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:23 Heat of formation + Delta-G solvation = -5.589342 kcal Electronic energy + Delta-G solvation = -16385.785453 eV Core-core repulsion = 13969.004014 eV Total energy + Delta-G solvation = -2416.781438 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.84502 -36.54559 -33.17659 -31.69195 -30.33688 -29.29882 -27.05136 -24.92848 -22.78595 -22.58524 -21.37581 -20.20809 -17.95171 -16.59960 -15.96042 -15.38143 -14.94751 -14.43636 -14.06456 -13.56041 -13.26594 -12.90260 -12.71465 -12.28887 -12.05731 -11.71100 -11.50940 -11.45459 -11.19666 -10.99394 -10.91116 -10.54079 -10.31137 -10.26048 -10.00819 -9.70640 -9.68872 -9.37472 -8.44185 -8.42623 -7.11313 -6.01938 -4.11432 3.26349 3.33507 3.36162 4.36827 4.40215 4.75287 4.83972 5.04810 5.14777 5.28156 5.34196 5.48566 5.56240 5.73986 5.84070 5.87964 5.94066 6.03806 6.09021 6.09945 6.18053 6.39204 6.43213 6.50139 6.60563 6.73563 6.79135 6.89058 6.94699 7.33128 7.37288 7.53525 7.90759 8.10663 8.30901 8.36556 8.99581 9.55430 11.02727 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.037637 B = 0.007816 C = 0.007070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.768622 B = 3581.721689 C = 3959.479995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.064 3.936 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.056 0.944 9 C 0.186 3.814 10 N -0.541 5.541 11 C 0.063 3.937 12 C -0.103 4.103 13 C -0.063 4.063 14 C -0.115 4.115 15 C 0.037 3.963 16 N -0.675 5.675 17 C 0.047 3.953 18 C -0.100 4.100 19 C 0.063 3.937 20 H 0.262 0.738 21 H 0.027 0.973 22 H 0.033 0.967 23 H 0.063 0.937 24 H 0.037 0.963 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.332 0.668 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.038 0.962 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.850 -9.953 -0.081 14.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.715 3.285 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.587 4.587 8 H 0.074 0.926 9 C 0.061 3.939 10 N -0.265 5.265 11 C -0.065 4.065 12 C -0.141 4.141 13 C -0.064 4.064 14 C -0.153 4.153 15 C -0.092 4.092 16 N -0.303 5.303 17 C -0.082 4.082 18 C -0.138 4.138 19 C -0.065 4.065 20 H 0.072 0.928 21 H 0.045 0.955 22 H 0.052 0.948 23 H 0.081 0.919 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.147 0.853 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.335 -10.453 0.612 14.713 hybrid contribution 0.863 2.103 -1.022 2.492 sum 11.199 -8.350 -0.410 13.975 Atomic orbital electron populations 1.69944 1.05995 1.26781 1.50263 1.24964 0.94758 0.99095 0.94986 0.86673 0.79956 0.83758 0.78113 1.20679 1.21099 1.19966 1.21762 0.93293 0.92142 1.51496 0.92574 1.19744 0.90931 0.85533 0.97727 1.62406 1.16886 1.46506 1.00671 1.21877 0.94211 0.95199 0.95242 1.21668 0.97787 0.99763 0.94899 1.21027 0.94810 0.93838 0.96728 1.22571 0.93907 0.97070 1.01719 1.23030 0.97957 0.91402 0.96834 1.63139 1.06036 1.03450 1.57711 1.22828 0.87885 0.96493 1.00998 1.21604 0.96540 0.99421 0.96231 1.21894 0.96292 0.95383 0.92964 0.92830 0.95504 0.94843 0.91895 0.94456 0.92967 0.91579 0.90955 0.91240 0.94467 0.90676 0.85315 0.93841 0.90117 0.92194 0.91785 0.94408 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 2 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.55 -15.08 7.74 -34.44 -0.27 -15.35 16 8 H 0.06 1.53 5.87 -52.49 -0.31 1.23 16 9 C 0.19 4.84 5.12 -4.98 -0.03 4.81 16 10 N -0.54 -11.66 4.84 -235.97 -1.14 -12.80 16 11 C 0.06 1.23 4.84 -3.78 -0.02 1.22 16 12 C -0.10 -1.60 4.55 -26.88 -0.12 -1.72 16 13 C -0.06 -0.93 0.61 -154.07 -0.09 -1.02 16 14 C -0.11 -1.41 6.14 -25.06 -0.15 -1.56 16 15 C 0.04 0.43 7.56 -1.82 -0.01 0.41 16 16 N -0.67 -8.83 7.52 -110.15 -0.83 -9.66 16 17 C 0.05 0.71 5.88 -2.92 -0.02 0.69 16 18 C -0.10 -1.59 4.57 -26.88 -0.12 -1.71 16 19 C 0.06 1.24 4.91 -3.78 -0.02 1.23 16 20 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 21 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.03 0.93 8.08 -51.93 -0.42 0.51 16 23 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 24 H 0.04 0.79 5.37 -51.93 -0.28 0.51 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.07 0.88 7.84 -51.93 -0.41 0.47 16 28 H 0.07 0.78 7.82 -51.93 -0.41 0.37 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.33 3.81 8.92 -39.29 -0.35 3.46 16 32 H 0.04 0.68 6.78 -51.93 -0.35 0.33 16 33 H 0.08 1.35 6.66 -51.93 -0.35 1.00 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.04 0.81 5.77 -51.93 -0.30 0.51 16 37 H 0.06 1.28 8.07 -51.93 -0.42 0.86 16 LS Contribution 278.49 15.07 4.20 4.20 Total: -1.00 -28.85 278.49 -9.11 -37.96 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.10 Total: 0.70 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -0.95 Total: -11.28 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -1.23 Total: -48.07 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.85 -9.11 -37.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885645312.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.371 kcal (2) G-P(sol) polarization free energy of solvation -28.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds