Wall clock time and date at job start Mon Mar 30 2020 02:35:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86793 * 119.99878 * 2 1
4 4 H 1.48505 * 109.47174 * 269.99765 * 3 2 1
5 5 H 1.48500 * 109.47520 * 29.99999 * 3 2 1
6 6 H 1.48510 * 109.47075 * 150.00224 * 3 2 1
7 7 C 1.37876 * 119.99660 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99512 * 179.97438 * 7 2 1
9 9 C 1.50699 * 120.00207 * 359.97438 * 7 2 1
10 10 N 1.46902 * 109.47195 * 184.83674 * 9 7 2
11 11 C 1.46852 * 110.99960 * 300.24916 * 10 9 7
12 12 C 1.53139 * 109.46553 * 186.31934 * 11 10 9
13 13 C 1.52575 * 109.31054 * 301.67407 * 12 11 10
14 14 C 1.54141 * 110.01972 * 178.00540 * 13 12 11
15 15 C 1.55038 * 102.80572 * 97.40174 * 14 13 12
16 16 N 1.48578 * 103.29599 * 37.01893 * 15 14 13
17 17 C 1.48028 * 105.83057 * 321.06585 * 16 15 14
18 18 C 1.52578 * 110.42074 * 56.37129 * 13 12 11
19 19 C 1.46856 * 110.99925 * 64.56757 * 10 9 7
20 20 H 0.97000 * 120.00242 * 0.02562 * 1 2 3
21 21 H 1.08993 * 109.47434 * 64.83736 * 9 7 2
22 22 H 1.09003 * 109.46974 * 304.83057 * 9 7 2
23 23 H 1.09003 * 109.46738 * 306.31504 * 11 10 9
24 24 H 1.08997 * 109.47719 * 66.31726 * 11 10 9
25 25 H 1.09004 * 109.49573 * 181.72875 * 12 11 10
26 26 H 1.08992 * 109.49819 * 61.62962 * 12 11 10
27 27 H 1.09002 * 110.73976 * 215.72530 * 14 13 12
28 28 H 1.08998 * 110.74534 * 339.06668 * 14 13 12
29 29 H 1.09002 * 110.64923 * 278.56751 * 15 14 13
30 30 H 1.09000 * 110.79743 * 155.54126 * 15 14 13
31 31 H 1.00895 * 111.00172 * 200.54442 * 16 15 14
32 32 H 1.09006 * 109.97351 * 265.88830 * 17 16 15
33 33 H 1.09003 * 109.97787 * 144.60450 * 17 16 15
34 34 H 1.09005 * 109.49516 * 183.67203 * 18 13 12
35 35 H 1.08998 * 109.49728 * 63.58165 * 18 13 12
36 36 H 1.09005 * 109.47160 * 293.67411 * 19 10 9
37 37 H 1.08997 * 109.47428 * 53.68569 * 19 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4466 2.6527 0.7000
6 1 3.5468 1.4401 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2510 -2.4991 -0.0005
10 7 2.2013 -3.6133 0.1156
11 6 3.1520 -3.6129 -1.0036
12 6 4.0218 -4.8714 -0.9348
13 6 4.7551 -4.9055 0.4028
14 6 5.5976 -6.1918 0.5102
15 6 7.0111 -5.7127 0.0904
16 7 7.0972 -4.3493 0.6744
17 6 5.7579 -3.7462 0.4913
18 6 3.7600 -4.8349 1.5573
19 6 2.8988 -3.5776 1.4075
20 1 -0.4850 0.8400 -0.0004
21 1 0.6905 -2.5952 -0.9304
22 1 0.5613 -2.5205 0.8433
23 1 2.6040 -3.6011 -1.9458
24 1 3.7865 -2.7289 -0.9412
25 1 4.7481 -4.8566 -1.7475
26 1 3.3907 -5.7553 -1.0263
27 1 5.6046 -6.5643 1.5345
28 1 5.2283 -6.9536 -0.1764
29 1 7.0964 -5.6720 -0.9955
30 1 7.7801 -6.3606 0.5112
31 1 7.8068 -3.8016 0.2112
32 1 5.7349 -3.1627 -0.4292
33 1 5.5167 -3.1093 1.3424
34 1 4.3016 -4.7944 2.5024
35 1 3.1210 -5.7177 1.5413
36 1 3.5352 -2.6938 1.4525
37 1 2.1671 -3.5401 2.2146
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000885645312.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:35:23
Heat of formation + Delta-G solvation = -5.589342 kcal
Electronic energy + Delta-G solvation = -16385.785453 eV
Core-core repulsion = 13969.004014 eV
Total energy + Delta-G solvation = -2416.781438 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 224.158 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-39.84502 -36.54559 -33.17659 -31.69195 -30.33688 -29.29882 -27.05136 -24.92848
-22.78595 -22.58524 -21.37581 -20.20809 -17.95171 -16.59960 -15.96042 -15.38143
-14.94751 -14.43636 -14.06456 -13.56041 -13.26594 -12.90260 -12.71465 -12.28887
-12.05731 -11.71100 -11.50940 -11.45459 -11.19666 -10.99394 -10.91116 -10.54079
-10.31137 -10.26048 -10.00819 -9.70640 -9.68872 -9.37472 -8.44185 -8.42623
-7.11313 -6.01938 -4.11432 3.26349 3.33507 3.36162 4.36827 4.40215
4.75287 4.83972 5.04810 5.14777 5.28156 5.34196 5.48566 5.56240
5.73986 5.84070 5.87964 5.94066 6.03806 6.09021 6.09945 6.18053
6.39204 6.43213 6.50139 6.60563 6.73563 6.79135 6.89058 6.94699
7.33128 7.37288 7.53525 7.90759 8.10663 8.30901 8.36556 8.99581
9.55430 11.02727
Molecular weight = 224.16amu
Principal moments of inertia in cm(-1)
A = 0.037637 B = 0.007816 C = 0.007070
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 743.768622 B = 3581.721689 C = 3959.479995
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.891 5.891
2 C 0.064 3.936
3 Si 0.887 3.113
4 H -0.281 1.281
5 H -0.285 1.285
6 H -0.275 1.275
7 C -0.548 4.548
8 H 0.056 0.944
9 C 0.186 3.814
10 N -0.541 5.541
11 C 0.063 3.937
12 C -0.103 4.103
13 C -0.063 4.063
14 C -0.115 4.115
15 C 0.037 3.963
16 N -0.675 5.675
17 C 0.047 3.953
18 C -0.100 4.100
19 C 0.063 3.937
20 H 0.262 0.738
21 H 0.027 0.973
22 H 0.033 0.967
23 H 0.063 0.937
24 H 0.037 0.963
25 H 0.052 0.948
26 H 0.066 0.934
27 H 0.072 0.928
28 H 0.069 0.931
29 H 0.037 0.963
30 H 0.075 0.925
31 H 0.332 0.668
32 H 0.043 0.957
33 H 0.081 0.919
34 H 0.059 0.941
35 H 0.063 0.937
36 H 0.038 0.962
37 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.850 -9.953 -0.081 14.723
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.530 5.530
2 C -0.138 4.138
3 Si 0.715 3.285
4 H -0.207 1.207
5 H -0.211 1.211
6 H -0.200 1.200
7 C -0.587 4.587
8 H 0.074 0.926
9 C 0.061 3.939
10 N -0.265 5.265
11 C -0.065 4.065
12 C -0.141 4.141
13 C -0.064 4.064
14 C -0.153 4.153
15 C -0.092 4.092
16 N -0.303 5.303
17 C -0.082 4.082
18 C -0.138 4.138
19 C -0.065 4.065
20 H 0.072 0.928
21 H 0.045 0.955
22 H 0.052 0.948
23 H 0.081 0.919
24 H 0.055 0.945
25 H 0.070 0.930
26 H 0.084 0.916
27 H 0.090 0.910
28 H 0.088 0.912
29 H 0.055 0.945
30 H 0.093 0.907
31 H 0.147 0.853
32 H 0.062 0.938
33 H 0.099 0.901
34 H 0.078 0.922
35 H 0.082 0.918
36 H 0.056 0.944
37 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 10.335 -10.453 0.612 14.713
hybrid contribution 0.863 2.103 -1.022 2.492
sum 11.199 -8.350 -0.410 13.975
Atomic orbital electron populations
1.69944 1.05995 1.26781 1.50263 1.24964 0.94758 0.99095 0.94986
0.86673 0.79956 0.83758 0.78113 1.20679 1.21099 1.19966 1.21762
0.93293 0.92142 1.51496 0.92574 1.19744 0.90931 0.85533 0.97727
1.62406 1.16886 1.46506 1.00671 1.21877 0.94211 0.95199 0.95242
1.21668 0.97787 0.99763 0.94899 1.21027 0.94810 0.93838 0.96728
1.22571 0.93907 0.97070 1.01719 1.23030 0.97957 0.91402 0.96834
1.63139 1.06036 1.03450 1.57711 1.22828 0.87885 0.96493 1.00998
1.21604 0.96540 0.99421 0.96231 1.21894 0.96292 0.95383 0.92964
0.92830 0.95504 0.94843 0.91895 0.94456 0.92967 0.91579 0.90955
0.91240 0.94467 0.90676 0.85315 0.93841 0.90117 0.92194 0.91785
0.94408 0.91825
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16
2 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16
3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16
4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16
6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16
7 C -0.55 -15.08 7.74 -34.44 -0.27 -15.35 16
8 H 0.06 1.53 5.87 -52.49 -0.31 1.23 16
9 C 0.19 4.84 5.12 -4.98 -0.03 4.81 16
10 N -0.54 -11.66 4.84 -235.97 -1.14 -12.80 16
11 C 0.06 1.23 4.84 -3.78 -0.02 1.22 16
12 C -0.10 -1.60 4.55 -26.88 -0.12 -1.72 16
13 C -0.06 -0.93 0.61 -154.07 -0.09 -1.02 16
14 C -0.11 -1.41 6.14 -25.06 -0.15 -1.56 16
15 C 0.04 0.43 7.56 -1.82 -0.01 0.41 16
16 N -0.67 -8.83 7.52 -110.15 -0.83 -9.66 16
17 C 0.05 0.71 5.88 -2.92 -0.02 0.69 16
18 C -0.10 -1.59 4.57 -26.88 -0.12 -1.71 16
19 C 0.06 1.24 4.91 -3.78 -0.02 1.23 16
20 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16
21 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16
22 H 0.03 0.93 8.08 -51.93 -0.42 0.51 16
23 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16
24 H 0.04 0.79 5.37 -51.93 -0.28 0.51 16
25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16
27 H 0.07 0.88 7.84 -51.93 -0.41 0.47 16
28 H 0.07 0.78 7.82 -51.93 -0.41 0.37 16
29 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16
30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16
31 H 0.33 3.81 8.92 -39.29 -0.35 3.46 16
32 H 0.04 0.68 6.78 -51.93 -0.35 0.33 16
33 H 0.08 1.35 6.66 -51.93 -0.35 1.00 16
34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16
35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16
36 H 0.04 0.81 5.77 -51.93 -0.30 0.51 16
37 H 0.06 1.28 8.07 -51.93 -0.42 0.86 16
LS Contribution 278.49 15.07 4.20 4.20
Total: -1.00 -28.85 278.49 -9.11 -37.96
By element:
Atomic # 1 Polarization: 6.80 SS G_CDS: -6.10 Total: 0.70 kcal
Atomic # 6 Polarization: -10.33 SS G_CDS: -0.95 Total: -11.28 kcal
Atomic # 7 Polarization: -46.84 SS G_CDS: -1.23 Total: -48.07 kcal
Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal
Total LS contribution 4.20 Total: 4.20 kcal
Total: -28.85 -9.11 -37.96 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000885645312.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.371 kcal
(2) G-P(sol) polarization free energy of solvation -28.848 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.523 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.961 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.589 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds