Wall clock time and date at job start Mon Mar 30 2020 02:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 119.99878 * 2 1 4 4 H 1.48505 * 109.47174 * 269.99765 * 3 2 1 5 5 H 1.48500 * 109.47520 * 29.99999 * 3 2 1 6 6 H 1.48510 * 109.47075 * 150.00224 * 3 2 1 7 7 C 1.37876 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99512 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00207 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47195 * 184.83674 * 9 7 2 11 11 C 1.46852 * 110.99960 * 300.24916 * 10 9 7 12 12 C 1.53139 * 109.46553 * 186.31934 * 11 10 9 13 13 C 1.52575 * 109.31054 * 301.67407 * 12 11 10 14 14 C 1.54141 * 110.01972 * 178.00540 * 13 12 11 15 15 C 1.55038 * 102.80572 * 97.40174 * 14 13 12 16 16 N 1.48578 * 103.29599 * 37.01893 * 15 14 13 17 17 C 1.48028 * 105.83057 * 321.06585 * 16 15 14 18 18 C 1.52578 * 110.42074 * 56.37129 * 13 12 11 19 19 C 1.46856 * 110.99925 * 64.56757 * 10 9 7 20 20 H 0.97000 * 120.00242 * 0.02562 * 1 2 3 21 21 H 1.08993 * 109.47434 * 64.83736 * 9 7 2 22 22 H 1.09003 * 109.46974 * 304.83057 * 9 7 2 23 23 H 1.09003 * 109.46738 * 306.31504 * 11 10 9 24 24 H 1.08997 * 109.47719 * 66.31726 * 11 10 9 25 25 H 1.09004 * 109.49573 * 181.72875 * 12 11 10 26 26 H 1.08992 * 109.49819 * 61.62962 * 12 11 10 27 27 H 1.09002 * 110.73976 * 215.72530 * 14 13 12 28 28 H 1.08998 * 110.74534 * 339.06668 * 14 13 12 29 29 H 1.09002 * 110.64923 * 278.56751 * 15 14 13 30 30 H 1.09000 * 110.79743 * 155.54126 * 15 14 13 31 31 H 1.00895 * 111.00172 * 200.54442 * 16 15 14 32 32 H 1.09006 * 109.97351 * 265.88830 * 17 16 15 33 33 H 1.09003 * 109.97787 * 144.60450 * 17 16 15 34 34 H 1.09005 * 109.49516 * 183.67203 * 18 13 12 35 35 H 1.08998 * 109.49728 * 63.58165 * 18 13 12 36 36 H 1.09005 * 109.47160 * 293.67411 * 19 10 9 37 37 H 1.08997 * 109.47428 * 53.68569 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2013 -3.6133 0.1156 11 6 3.1520 -3.6129 -1.0036 12 6 4.0218 -4.8714 -0.9348 13 6 4.7551 -4.9055 0.4028 14 6 5.5976 -6.1918 0.5102 15 6 7.0111 -5.7127 0.0904 16 7 7.0972 -4.3493 0.6744 17 6 5.7579 -3.7462 0.4913 18 6 3.7600 -4.8349 1.5573 19 6 2.8988 -3.5776 1.4075 20 1 -0.4850 0.8400 -0.0004 21 1 0.6905 -2.5952 -0.9304 22 1 0.5613 -2.5205 0.8433 23 1 2.6040 -3.6011 -1.9458 24 1 3.7865 -2.7289 -0.9412 25 1 4.7481 -4.8566 -1.7475 26 1 3.3907 -5.7553 -1.0263 27 1 5.6046 -6.5643 1.5345 28 1 5.2283 -6.9536 -0.1764 29 1 7.0964 -5.6720 -0.9955 30 1 7.7801 -6.3606 0.5112 31 1 7.8068 -3.8016 0.2112 32 1 5.7349 -3.1627 -0.4292 33 1 5.5167 -3.1093 1.3424 34 1 4.3016 -4.7944 2.5024 35 1 3.1210 -5.7177 1.5413 36 1 3.5352 -2.6938 1.4525 37 1 2.1671 -3.5401 2.2146 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885645312.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:23 Heat of formation + Delta-G solvation = -26.541607 kcal Electronic energy + Delta-G solvation = -16386.694011 eV Core-core repulsion = 13969.004014 eV Total energy + Delta-G solvation = -2417.689997 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.12689 -38.04873 -35.03740 -33.34369 -31.79570 -30.42129 -28.81895 -26.57444 -24.42576 -24.05540 -22.71834 -21.58833 -19.43336 -18.33979 -17.33282 -16.92752 -16.42754 -15.97382 -15.77967 -15.02719 -14.83540 -14.25702 -14.19716 -13.76706 -13.36164 -13.17803 -13.06797 -12.89013 -12.82043 -12.56461 -12.41537 -12.07693 -12.00779 -11.92102 -11.78952 -11.37659 -11.05060 -10.90144 -10.63007 -9.45727 -8.99323 -8.16796 -6.37534 1.33551 1.34220 1.44751 2.34413 3.06756 3.36589 3.36865 3.70370 3.73164 3.89907 4.21969 4.34707 4.43522 4.44720 4.51707 4.66466 4.72776 4.75183 4.84744 4.89266 4.99807 5.05982 5.13852 5.21856 5.22656 5.25930 5.27559 5.32831 5.41672 5.49353 5.72401 5.85196 6.04883 6.26960 6.43244 6.58467 6.84350 7.34108 8.84860 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.037637 B = 0.007816 C = 0.007070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.768622 B = 3581.721689 C = 3959.479995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.956 3.044 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.555 4.555 8 H 0.055 0.945 9 C 0.198 3.802 10 N -0.539 5.539 11 C 0.064 3.936 12 C -0.091 4.091 13 C -0.064 4.064 14 C -0.108 4.108 15 C 0.038 3.962 16 N -0.680 5.680 17 C 0.050 3.950 18 C -0.089 4.089 19 C 0.065 3.935 20 H 0.265 0.735 21 H 0.002 0.998 22 H 0.005 0.995 23 H 0.052 0.948 24 H 0.018 0.982 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.342 0.658 32 H 0.032 0.968 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.017 0.983 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.999 -11.012 -0.246 17.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.188 4.188 3 Si 0.781 3.219 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.594 4.594 8 H 0.073 0.927 9 C 0.072 3.928 10 N -0.263 5.263 11 C -0.064 4.064 12 C -0.129 4.129 13 C -0.065 4.065 14 C -0.146 4.146 15 C -0.090 4.090 16 N -0.309 5.309 17 C -0.079 4.079 18 C -0.127 4.127 19 C -0.063 4.063 20 H 0.074 0.926 21 H 0.020 0.980 22 H 0.023 0.977 23 H 0.071 0.929 24 H 0.036 0.964 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.157 0.843 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.035 0.965 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.508 -11.531 0.443 17.018 hybrid contribution 0.179 2.412 -0.965 2.604 sum 12.688 -9.119 -0.522 15.633 Atomic orbital electron populations 1.70065 1.07556 1.27883 1.51116 1.25823 0.95623 1.02835 0.94550 0.85590 0.78676 0.79199 0.78458 1.19804 1.20471 1.19357 1.21971 0.93293 0.92982 1.51162 0.92689 1.19411 0.91359 0.86960 0.95110 1.62357 1.17461 1.44089 1.02376 1.21920 0.93784 0.96900 0.93839 1.21587 0.97565 0.97465 0.96298 1.21022 0.94615 0.95449 0.95425 1.22549 0.93644 0.95762 1.02635 1.23119 0.97984 0.90406 0.97533 1.63112 1.05009 1.04387 1.58398 1.22666 0.89415 0.96417 0.99410 1.21524 0.96335 0.97219 0.97619 1.21914 0.95972 0.96939 0.91492 0.92569 0.97994 0.97669 0.92930 0.96372 0.90885 0.90658 0.90476 0.89531 0.93475 0.88825 0.84281 0.94996 0.92393 0.90921 0.90883 0.96483 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.02 13.29 21.45 0.28 -55.74 16 2 C 0.01 0.63 5.46 84.65 0.46 1.09 16 3 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 7 C -0.56 -31.41 7.74 25.60 0.20 -31.21 16 8 H 0.05 3.07 5.87 -2.91 -0.02 3.06 16 9 C 0.20 10.77 5.12 85.56 0.44 11.20 16 10 N -0.54 -23.76 4.84 -900.49 -4.36 -28.12 16 11 C 0.06 2.50 4.84 86.36 0.42 2.92 16 12 C -0.09 -2.64 4.55 30.50 0.14 -2.50 16 13 C -0.06 -1.74 0.61 -51.90 -0.03 -1.78 16 14 C -0.11 -2.23 6.14 31.68 0.19 -2.04 16 15 C 0.04 0.73 7.56 86.68 0.65 1.39 16 16 N -0.68 -16.04 7.52 -502.41 -3.78 -19.82 16 17 C 0.05 1.45 5.88 86.27 0.51 1.96 16 18 C -0.09 -2.70 4.57 30.50 0.14 -2.56 16 19 C 0.07 2.61 4.91 86.36 0.42 3.03 16 20 H 0.27 15.08 8.31 -92.71 -0.77 14.30 16 21 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 22 H 0.01 0.30 8.08 -2.39 -0.02 0.28 16 23 H 0.05 2.12 8.12 -2.39 -0.02 2.10 16 24 H 0.02 0.78 5.37 -2.39 -0.01 0.76 16 25 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.08 1.56 7.84 -2.39 -0.02 1.54 16 28 H 0.09 1.54 7.82 -2.39 -0.02 1.52 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.34 7.01 8.92 -89.70 -0.80 6.21 16 32 H 0.03 0.98 6.78 -2.38 -0.02 0.96 16 33 H 0.06 1.93 6.66 -2.39 -0.02 1.91 16 34 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.02 0.75 5.77 -2.38 -0.01 0.73 16 37 H 0.05 2.11 8.07 -2.39 -0.02 2.09 16 Total: -1.00 -62.77 278.49 -2.04 -64.81 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.24 Total: 10.78 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 3.54 Total: -18.50 kcal Atomic # 7 Polarization: -95.82 SS G_CDS: -7.85 Total: -103.68 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -62.77 -2.04 -64.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885645312.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.272 kcal (2) G-P(sol) polarization free energy of solvation -62.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds