Wall clock time and date at job start Mon Mar 30 2020 02:35:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86793 * 119.99878 * 2 1
4 4 H 1.48505 * 109.47174 * 269.99765 * 3 2 1
5 5 H 1.48500 * 109.47520 * 29.99999 * 3 2 1
6 6 H 1.48510 * 109.47075 * 150.00224 * 3 2 1
7 7 C 1.37876 * 119.99660 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99512 * 179.97438 * 7 2 1
9 9 C 1.50699 * 120.00207 * 359.97438 * 7 2 1
10 10 N 1.46902 * 109.47195 * 184.83674 * 9 7 2
11 11 C 1.46852 * 110.99960 * 300.24916 * 10 9 7
12 12 C 1.53139 * 109.46553 * 186.31934 * 11 10 9
13 13 C 1.52575 * 109.31054 * 301.67407 * 12 11 10
14 14 C 1.54141 * 110.01972 * 178.00540 * 13 12 11
15 15 C 1.55038 * 102.80572 * 97.40174 * 14 13 12
16 16 N 1.48578 * 103.29599 * 37.01893 * 15 14 13
17 17 C 1.48028 * 105.83057 * 321.06585 * 16 15 14
18 18 C 1.52578 * 110.42074 * 56.37129 * 13 12 11
19 19 C 1.46856 * 110.99925 * 64.56757 * 10 9 7
20 20 H 0.97000 * 120.00242 * 0.02562 * 1 2 3
21 21 H 1.08993 * 109.47434 * 64.83736 * 9 7 2
22 22 H 1.09003 * 109.46974 * 304.83057 * 9 7 2
23 23 H 1.09003 * 109.46738 * 306.31504 * 11 10 9
24 24 H 1.08997 * 109.47719 * 66.31726 * 11 10 9
25 25 H 1.09004 * 109.49573 * 181.72875 * 12 11 10
26 26 H 1.08992 * 109.49819 * 61.62962 * 12 11 10
27 27 H 1.09002 * 110.73976 * 215.72530 * 14 13 12
28 28 H 1.08998 * 110.74534 * 339.06668 * 14 13 12
29 29 H 1.09002 * 110.64923 * 278.56751 * 15 14 13
30 30 H 1.09000 * 110.79743 * 155.54126 * 15 14 13
31 31 H 1.00895 * 111.00172 * 200.54442 * 16 15 14
32 32 H 1.09006 * 109.97351 * 265.88830 * 17 16 15
33 33 H 1.09003 * 109.97787 * 144.60450 * 17 16 15
34 34 H 1.09005 * 109.49516 * 183.67203 * 18 13 12
35 35 H 1.08998 * 109.49728 * 63.58165 * 18 13 12
36 36 H 1.09005 * 109.47160 * 293.67411 * 19 10 9
37 37 H 1.08997 * 109.47428 * 53.68569 * 19 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4466 2.6527 0.7000
6 1 3.5468 1.4401 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2510 -2.4991 -0.0005
10 7 2.2013 -3.6133 0.1156
11 6 3.1520 -3.6129 -1.0036
12 6 4.0218 -4.8714 -0.9348
13 6 4.7551 -4.9055 0.4028
14 6 5.5976 -6.1918 0.5102
15 6 7.0111 -5.7127 0.0904
16 7 7.0972 -4.3493 0.6744
17 6 5.7579 -3.7462 0.4913
18 6 3.7600 -4.8349 1.5573
19 6 2.8988 -3.5776 1.4075
20 1 -0.4850 0.8400 -0.0004
21 1 0.6905 -2.5952 -0.9304
22 1 0.5613 -2.5205 0.8433
23 1 2.6040 -3.6011 -1.9458
24 1 3.7865 -2.7289 -0.9412
25 1 4.7481 -4.8566 -1.7475
26 1 3.3907 -5.7553 -1.0263
27 1 5.6046 -6.5643 1.5345
28 1 5.2283 -6.9536 -0.1764
29 1 7.0964 -5.6720 -0.9955
30 1 7.7801 -6.3606 0.5112
31 1 7.8068 -3.8016 0.2112
32 1 5.7349 -3.1627 -0.4292
33 1 5.5167 -3.1093 1.3424
34 1 4.3016 -4.7944 2.5024
35 1 3.1210 -5.7177 1.5413
36 1 3.5352 -2.6938 1.4525
37 1 2.1671 -3.5401 2.2146
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000885645312.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:35:23
Heat of formation + Delta-G solvation = -26.541607 kcal
Electronic energy + Delta-G solvation = -16386.694011 eV
Core-core repulsion = 13969.004014 eV
Total energy + Delta-G solvation = -2417.689997 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 224.158 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-41.12689 -38.04873 -35.03740 -33.34369 -31.79570 -30.42129 -28.81895 -26.57444
-24.42576 -24.05540 -22.71834 -21.58833 -19.43336 -18.33979 -17.33282 -16.92752
-16.42754 -15.97382 -15.77967 -15.02719 -14.83540 -14.25702 -14.19716 -13.76706
-13.36164 -13.17803 -13.06797 -12.89013 -12.82043 -12.56461 -12.41537 -12.07693
-12.00779 -11.92102 -11.78952 -11.37659 -11.05060 -10.90144 -10.63007 -9.45727
-8.99323 -8.16796 -6.37534 1.33551 1.34220 1.44751 2.34413 3.06756
3.36589 3.36865 3.70370 3.73164 3.89907 4.21969 4.34707 4.43522
4.44720 4.51707 4.66466 4.72776 4.75183 4.84744 4.89266 4.99807
5.05982 5.13852 5.21856 5.22656 5.25930 5.27559 5.32831 5.41672
5.49353 5.72401 5.85196 6.04883 6.26960 6.43244 6.58467 6.84350
7.34108 8.84860
Molecular weight = 224.16amu
Principal moments of inertia in cm(-1)
A = 0.037637 B = 0.007816 C = 0.007070
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 743.768622 B = 3581.721689 C = 3959.479995
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.926 5.926
2 C 0.011 3.989
3 Si 0.956 3.044
4 H -0.273 1.273
5 H -0.279 1.279
6 H -0.269 1.269
7 C -0.555 4.555
8 H 0.055 0.945
9 C 0.198 3.802
10 N -0.539 5.539
11 C 0.064 3.936
12 C -0.091 4.091
13 C -0.064 4.064
14 C -0.108 4.108
15 C 0.038 3.962
16 N -0.680 5.680
17 C 0.050 3.950
18 C -0.089 4.089
19 C 0.065 3.935
20 H 0.265 0.735
21 H 0.002 0.998
22 H 0.005 0.995
23 H 0.052 0.948
24 H 0.018 0.982
25 H 0.073 0.927
26 H 0.075 0.925
27 H 0.077 0.923
28 H 0.086 0.914
29 H 0.047 0.953
30 H 0.093 0.907
31 H 0.342 0.658
32 H 0.032 0.968
33 H 0.058 0.942
34 H 0.072 0.928
35 H 0.073 0.927
36 H 0.017 0.983
37 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.999 -11.012 -0.246 17.038
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.566 5.566
2 C -0.188 4.188
3 Si 0.781 3.219
4 H -0.198 1.198
5 H -0.205 1.205
6 H -0.194 1.194
7 C -0.594 4.594
8 H 0.073 0.927
9 C 0.072 3.928
10 N -0.263 5.263
11 C -0.064 4.064
12 C -0.129 4.129
13 C -0.065 4.065
14 C -0.146 4.146
15 C -0.090 4.090
16 N -0.309 5.309
17 C -0.079 4.079
18 C -0.127 4.127
19 C -0.063 4.063
20 H 0.074 0.926
21 H 0.020 0.980
22 H 0.023 0.977
23 H 0.071 0.929
24 H 0.036 0.964
25 H 0.091 0.909
26 H 0.093 0.907
27 H 0.095 0.905
28 H 0.105 0.895
29 H 0.065 0.935
30 H 0.112 0.888
31 H 0.157 0.843
32 H 0.050 0.950
33 H 0.076 0.924
34 H 0.091 0.909
35 H 0.091 0.909
36 H 0.035 0.965
37 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges 12.508 -11.531 0.443 17.018
hybrid contribution 0.179 2.412 -0.965 2.604
sum 12.688 -9.119 -0.522 15.633
Atomic orbital electron populations
1.70065 1.07556 1.27883 1.51116 1.25823 0.95623 1.02835 0.94550
0.85590 0.78676 0.79199 0.78458 1.19804 1.20471 1.19357 1.21971
0.93293 0.92982 1.51162 0.92689 1.19411 0.91359 0.86960 0.95110
1.62357 1.17461 1.44089 1.02376 1.21920 0.93784 0.96900 0.93839
1.21587 0.97565 0.97465 0.96298 1.21022 0.94615 0.95449 0.95425
1.22549 0.93644 0.95762 1.02635 1.23119 0.97984 0.90406 0.97533
1.63112 1.05009 1.04387 1.58398 1.22666 0.89415 0.96417 0.99410
1.21524 0.96335 0.97219 0.97619 1.21914 0.95972 0.96939 0.91492
0.92569 0.97994 0.97669 0.92930 0.96372 0.90885 0.90658 0.90476
0.89531 0.93475 0.88825 0.84281 0.94996 0.92393 0.90921 0.90883
0.96483 0.93107
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.02 13.29 21.45 0.28 -55.74 16
2 C 0.01 0.63 5.46 84.65 0.46 1.09 16
3 Si 0.96 44.56 29.54 68.60 2.03 46.59 16
4 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16
5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16
6 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16
7 C -0.56 -31.41 7.74 25.60 0.20 -31.21 16
8 H 0.05 3.07 5.87 -2.91 -0.02 3.06 16
9 C 0.20 10.77 5.12 85.56 0.44 11.20 16
10 N -0.54 -23.76 4.84 -900.49 -4.36 -28.12 16
11 C 0.06 2.50 4.84 86.36 0.42 2.92 16
12 C -0.09 -2.64 4.55 30.50 0.14 -2.50 16
13 C -0.06 -1.74 0.61 -51.90 -0.03 -1.78 16
14 C -0.11 -2.23 6.14 31.68 0.19 -2.04 16
15 C 0.04 0.73 7.56 86.68 0.65 1.39 16
16 N -0.68 -16.04 7.52 -502.41 -3.78 -19.82 16
17 C 0.05 1.45 5.88 86.27 0.51 1.96 16
18 C -0.09 -2.70 4.57 30.50 0.14 -2.56 16
19 C 0.07 2.61 4.91 86.36 0.42 3.03 16
20 H 0.27 15.08 8.31 -92.71 -0.77 14.30 16
21 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16
22 H 0.01 0.30 8.08 -2.39 -0.02 0.28 16
23 H 0.05 2.12 8.12 -2.39 -0.02 2.10 16
24 H 0.02 0.78 5.37 -2.39 -0.01 0.76 16
25 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16
26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16
27 H 0.08 1.56 7.84 -2.39 -0.02 1.54 16
28 H 0.09 1.54 7.82 -2.39 -0.02 1.52 16
29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16
30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16
31 H 0.34 7.01 8.92 -89.70 -0.80 6.21 16
32 H 0.03 0.98 6.78 -2.38 -0.02 0.96 16
33 H 0.06 1.93 6.66 -2.39 -0.02 1.91 16
34 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16
35 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16
36 H 0.02 0.75 5.77 -2.38 -0.01 0.73 16
37 H 0.05 2.11 8.07 -2.39 -0.02 2.09 16
Total: -1.00 -62.77 278.49 -2.04 -64.81
By element:
Atomic # 1 Polarization: 10.53 SS G_CDS: 0.24 Total: 10.78 kcal
Atomic # 6 Polarization: -22.04 SS G_CDS: 3.54 Total: -18.50 kcal
Atomic # 7 Polarization: -95.82 SS G_CDS: -7.85 Total: -103.68 kcal
Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal
Total: -62.77 -2.04 -64.81 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000885645312.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.272 kcal
(2) G-P(sol) polarization free energy of solvation -62.771 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.499 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.042 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.813 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.542 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds