Wall clock time and date at job start Mon Mar 30 2020 03:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48713 * 110.99487 * 2 1 4 4 H 1.09001 * 112.74844 * 44.44574 * 3 2 1 5 5 C 1.54597 * 104.22719 * 282.48828 * 3 2 1 6 6 C 1.54291 * 104.84294 * 334.82394 * 5 3 2 7 7 C 1.48708 * 111.00010 * 245.53721 * 2 1 3 8 8 H 1.09001 * 112.23618 * 315.83481 * 7 2 1 9 9 C 1.53595 * 107.21502 * 191.64902 * 7 2 1 10 10 C 1.53139 * 108.94656 * 295.88561 * 9 7 2 11 11 N 1.46905 * 109.42775 * 293.97861 * 10 9 7 12 12 C 1.46906 * 110.99938 * 285.27868 * 11 10 9 13 13 C 1.50694 * 109.46706 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00594 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99858 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00207 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 119.99868 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47286 * 269.99666 * 17 15 13 19 19 H 1.48504 * 109.47316 * 29.99784 * 17 15 13 20 20 H 1.48499 * 109.47421 * 149.99672 * 17 15 13 21 21 C 1.53133 * 109.68786 * 54.03459 * 10 9 7 22 22 H 1.08997 * 109.46961 * 60.00078 * 1 2 3 23 23 H 1.09001 * 109.47017 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47226 * 299.99345 * 1 2 3 25 25 H 1.09000 * 110.36570 * 93.66609 * 5 3 2 26 26 H 1.09004 * 110.36444 * 215.87610 * 5 3 2 27 27 H 1.08999 * 110.36043 * 118.83722 * 6 5 3 28 28 H 1.09003 * 110.36397 * 241.04645 * 6 5 3 29 29 H 1.09003 * 109.50495 * 176.06563 * 9 7 2 30 30 H 1.08997 * 109.57724 * 55.74977 * 9 7 2 31 31 H 1.09000 * 109.42423 * 174.08886 * 10 9 7 32 32 H 1.00901 * 110.99742 * 161.32378 * 11 10 9 33 33 H 1.08998 * 109.46942 * 59.99954 * 12 11 10 34 34 H 1.09004 * 109.46796 * 299.99713 * 12 11 10 35 35 H 0.96998 * 120.00696 * 180.02562 * 16 15 13 36 36 H 1.08997 * 109.56810 * 65.82731 * 21 10 9 37 37 H 1.08997 * 109.56784 * 186.19220 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0018 1.3884 0.0000 4 1 1.4829 2.0390 0.7039 5 6 1.8354 1.8592 -1.4631 6 6 1.8355 0.5619 -2.2982 7 6 2.0020 -0.5749 -1.2637 8 1 1.4741 -1.4816 -1.5592 9 6 3.5063 -0.8070 -1.0586 10 6 4.1936 0.5449 -0.8461 11 7 4.1025 1.3384 -2.0790 12 6 5.0344 0.8370 -3.0980 13 6 4.9122 1.6735 -4.3455 14 1 4.2125 2.4956 -4.3781 15 6 5.6943 1.3899 -5.4450 16 7 5.5880 2.1202 -6.5336 17 14 6.9049 -0.0315 -5.3884 18 1 8.2168 0.4551 -4.8912 19 1 6.3897 -1.0846 -4.4769 20 1 7.0706 -0.5952 -6.7523 21 6 3.5075 1.2985 0.2967 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 0.8910 2.3894 -1.5859 26 1 2.6692 2.4989 -1.7529 27 1 0.8910 0.4541 -2.8316 28 1 2.6690 0.5629 -3.0006 29 1 3.9230 -1.2939 -1.9404 30 1 3.6626 -1.4376 -0.1833 31 1 5.2421 0.3831 -0.5958 32 1 4.2633 2.3168 -1.8920 33 1 4.7939 -0.2001 -3.3313 34 1 6.0544 0.8970 -2.7183 35 1 6.1379 1.9205 -7.3072 36 1 3.6637 0.7628 1.2330 37 1 3.9248 2.3024 0.3744 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020524047.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:33 Heat of formation + Delta-G solvation = 41.881199 kcal Electronic energy + Delta-G solvation = -16753.321375 eV Core-core repulsion = 14338.598414 eV Total energy + Delta-G solvation = -2414.722961 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.65585 -35.52708 -32.75674 -31.07568 -30.76519 -30.19152 -26.99479 -24.93963 -23.73405 -21.82042 -21.04991 -19.74286 -18.28465 -16.71631 -16.26037 -15.28986 -14.75772 -13.96436 -13.94070 -13.77851 -13.16190 -12.73185 -12.44479 -12.34805 -12.22711 -12.12344 -11.70423 -11.57057 -11.42756 -10.83702 -10.61403 -10.33601 -10.28959 -9.97093 -9.76627 -9.68138 -9.43682 -9.22312 -8.60399 -8.17244 -7.15391 -6.08127 -4.06172 3.26755 3.34907 3.37187 4.29864 4.40127 4.93022 5.06430 5.19661 5.26204 5.38961 5.43790 5.59045 5.63159 5.74540 5.78111 5.82137 5.88716 6.00273 6.07825 6.14823 6.30563 6.42143 6.45354 6.54160 6.58671 6.71158 6.82008 6.98470 7.07381 7.16338 7.42336 7.57826 7.63913 7.87304 8.27656 8.61463 8.99929 9.54287 11.04997 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.043785 B = 0.008134 C = 0.007893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.330611 B = 3441.453852 C = 3546.514641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.514 5.514 3 C 0.063 3.937 4 H 0.079 0.921 5 C -0.133 4.133 6 C -0.140 4.140 7 C 0.067 3.933 8 H 0.077 0.923 9 C -0.095 4.095 10 C 0.081 3.919 11 N -0.658 5.658 12 C 0.153 3.847 13 C -0.515 4.515 14 H 0.079 0.921 15 C 0.069 3.931 16 N -0.900 5.900 17 Si 0.877 3.123 18 H -0.279 1.279 19 H -0.267 1.267 20 H -0.287 1.287 21 C -0.103 4.103 22 H 0.030 0.970 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.033 0.967 26 H 0.100 0.900 27 H 0.027 0.973 28 H 0.133 0.867 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.031 0.969 32 H 0.333 0.667 33 H 0.029 0.971 34 H -0.022 1.022 35 H 0.263 0.737 36 H 0.066 0.934 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.278 -3.721 12.659 14.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.237 5.237 3 C -0.046 4.046 4 H 0.097 0.903 5 C -0.172 4.172 6 C -0.178 4.178 7 C -0.042 4.042 8 H 0.096 0.904 9 C -0.133 4.133 10 C -0.029 4.029 11 N -0.291 5.291 12 C 0.025 3.975 13 C -0.553 4.553 14 H 0.097 0.903 15 C -0.133 4.133 16 N -0.539 5.539 17 Si 0.704 3.296 18 H -0.205 1.205 19 H -0.191 1.191 20 H -0.213 1.213 21 C -0.141 4.141 22 H 0.048 0.952 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.052 0.948 26 H 0.118 0.882 27 H 0.046 0.954 28 H 0.151 0.849 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.153 0.847 33 H 0.046 0.954 34 H -0.004 1.004 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.569 -4.374 12.723 14.972 hybrid contribution 1.156 0.005 -0.482 1.252 sum -5.414 -4.368 12.241 14.080 Atomic orbital electron populations 1.22379 0.89397 1.01224 1.00341 1.65476 1.07082 1.15829 1.35311 1.22973 0.95081 0.89438 0.97111 0.90331 1.23000 1.00829 0.99414 0.93909 1.23210 1.02277 0.92699 0.99653 1.22918 0.95099 0.97527 0.88623 0.90446 1.21630 0.94337 0.96296 1.01070 1.21505 0.96489 0.94372 0.90579 1.61787 1.53690 1.05822 1.07769 1.20159 0.88828 0.96992 0.91492 1.21047 1.22702 1.15808 0.95771 0.90294 1.24906 0.96823 0.96179 0.95358 1.69895 1.40612 1.39624 1.03744 0.86840 0.81879 0.83449 0.77416 1.20460 1.19139 1.21255 1.21799 0.94601 0.99703 0.98004 0.95171 0.92123 0.92247 0.94816 0.88186 0.95436 0.84922 0.91490 0.92140 0.95085 0.84729 0.95351 1.00393 0.92676 0.91511 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.45 60.07 0.57 0.77 16 2 N -0.51 -7.46 5.29 -221.18 -1.17 -8.63 16 3 C 0.06 0.89 3.67 -65.49 -0.24 0.65 16 4 H 0.08 1.03 8.11 -51.93 -0.42 0.60 16 5 C -0.13 -2.12 5.26 -25.22 -0.13 -2.25 16 6 C -0.14 -2.44 5.22 -25.21 -0.13 -2.57 16 7 C 0.07 1.05 3.68 -65.56 -0.24 0.81 16 8 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 9 C -0.10 -1.53 5.33 -26.35 -0.14 -1.67 16 10 C 0.08 1.32 2.80 -67.57 -0.19 1.14 16 11 N -0.66 -12.42 1.34 -107.84 -0.14 -12.57 16 12 C 0.15 3.51 3.46 -4.98 -0.02 3.50 16 13 C -0.52 -14.13 9.84 -34.44 -0.34 -14.47 16 14 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -27.27 13.96 55.43 0.77 -26.49 16 17 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 C -0.10 -1.45 5.33 -26.29 -0.14 -1.59 16 22 H 0.03 0.40 6.88 -51.93 -0.36 0.04 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.03 0.52 8.10 -51.93 -0.42 0.10 16 26 H 0.10 1.71 4.83 -51.93 -0.25 1.46 16 27 H 0.03 0.47 8.01 -51.93 -0.42 0.06 16 28 H 0.13 2.76 4.89 -51.93 -0.25 2.50 16 29 H 0.07 1.17 6.70 -51.93 -0.35 0.82 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.03 0.53 7.97 -51.93 -0.41 0.11 16 32 H 0.33 6.18 6.98 -39.29 -0.27 5.90 16 33 H 0.03 0.68 5.76 -51.93 -0.30 0.38 16 34 H -0.02 -0.51 7.52 -51.93 -0.39 -0.90 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.81 8.03 -51.93 -0.42 0.39 16 LS Contribution 269.16 15.07 4.06 4.06 Total: -1.00 -28.53 269.16 -8.22 -36.75 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.96 Total: 4.03 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -1.10 Total: -13.83 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.54 Total: -47.69 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.53 -8.22 -36.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020524047.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.628 kcal (2) G-P(sol) polarization free energy of solvation -28.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds