Wall clock time and date at job start Mon Mar 30 2020 02:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 C 1.50693 * 109.46915 * 240.00078 * 2 1 3 5 5 H 1.08005 * 119.99854 * 239.99900 * 4 2 1 6 6 C 1.37878 * 120.00083 * 59.99957 * 4 2 1 7 7 N 1.31511 * 119.99935 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99899 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47458 * 89.99770 * 8 6 4 10 10 H 1.48501 * 109.47154 * 210.00388 * 8 6 4 11 11 H 1.48500 * 109.47109 * 329.99685 * 8 6 4 12 12 N 1.46901 * 109.47021 * 120.00193 * 2 1 3 13 13 C 1.46905 * 110.99870 * 274.99736 * 12 2 1 14 14 H 1.09003 * 109.57634 * 35.00474 * 13 12 2 15 15 C 1.53144 * 109.57655 * 274.73965 * 13 12 2 16 16 N 1.47187 * 109.22016 * 240.23029 * 15 13 12 17 17 C 1.46944 * 111.01779 * 297.89767 * 16 15 13 18 18 C 1.53128 * 109.35508 * 62.03262 * 17 16 15 19 19 C 1.53388 * 109.57571 * 155.26465 * 13 12 2 20 20 C 1.53386 * 108.60033 * 60.05415 * 19 13 12 21 21 C 1.46936 * 111.12991 * 61.91895 * 16 15 13 22 22 H 1.08993 * 109.47190 * 59.99909 * 1 2 3 23 23 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47106 * 300.00284 * 1 2 3 25 25 H 0.97003 * 119.99872 * 179.97438 * 7 6 4 26 26 H 1.00901 * 111.00067 * 38.94911 * 12 2 1 27 27 H 1.08994 * 109.49211 * 0.15423 * 15 13 12 28 28 H 1.09003 * 109.48321 * 120.22104 * 15 13 12 29 29 H 1.09001 * 109.49099 * 302.06852 * 17 16 15 30 30 H 1.08994 * 109.51176 * 182.00947 * 17 16 15 31 31 H 1.09002 * 109.57308 * 240.24708 * 18 17 16 32 32 H 1.08995 * 109.68563 * 119.92339 * 18 17 16 33 33 H 1.08994 * 110.11162 * 299.41001 * 19 13 12 34 34 H 1.08992 * 109.57484 * 178.81179 * 20 19 13 35 35 H 1.09007 * 109.57334 * 299.19595 * 20 19 13 36 36 H 1.09005 * 109.49308 * 58.00740 * 21 16 15 37 37 H 1.09006 * 109.49485 * 178.07615 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3212 -1.1203 -4.0079 9 1 1.3426 -2.1617 -4.4118 10 1 2.4865 -0.1414 -5.1123 11 1 3.6292 -1.7583 -3.7122 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 1 1.2582 0.9338 2.2925 15 6 3.4144 0.9782 2.3283 16 7 4.1569 0.6819 3.5642 17 6 3.4157 1.1408 4.7471 18 6 2.0823 0.3927 4.8324 19 6 1.9836 -0.5800 3.6503 20 6 3.1566 -1.5667 3.7075 21 6 4.4707 -0.7502 3.6632 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 0.7095 1.1619 -3.4844 26 1 1.4495 -1.4979 1.4100 27 1 4.0007 0.6606 1.4662 28 1 3.2238 2.0495 2.2643 29 1 3.2275 2.2113 4.6657 30 1 4.0023 0.9419 5.6440 31 1 1.2597 1.1064 4.7877 32 1 2.0327 -0.1637 5.7683 33 1 1.0375 -1.1198 3.6872 34 1 3.1136 -2.1315 4.6387 35 1 3.1002 -2.2505 2.8605 36 1 5.0508 -1.0564 2.7926 37 1 5.0487 -0.9342 4.5688 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871314.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:20 Heat of formation + Delta-G solvation = 2.226538 kcal Electronic energy + Delta-G solvation = -16426.717462 eV Core-core repulsion = 14010.274946 eV Total energy + Delta-G solvation = -2416.442516 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.30823 -35.63269 -32.63500 -31.63071 -30.62923 -29.65664 -26.58189 -25.11433 -22.80313 -22.68378 -21.81296 -19.92569 -17.23077 -16.45428 -16.01961 -15.70530 -15.45790 -14.61233 -13.71676 -13.25064 -12.83935 -12.65978 -12.51541 -11.95710 -11.88041 -11.75956 -11.59998 -11.46954 -11.18562 -10.95955 -10.86799 -10.70155 -10.31366 -10.16117 -10.06628 -9.88383 -9.58282 -8.96960 -8.34620 -7.98418 -7.16495 -5.96759 -3.99831 3.33531 3.40019 3.44650 4.34083 4.45135 4.81092 4.90884 5.07449 5.34797 5.36616 5.39418 5.47244 5.54357 5.66020 5.73494 5.82189 5.90746 6.05657 6.12858 6.19612 6.24814 6.44964 6.53337 6.56352 6.67939 6.72199 6.84058 7.12306 7.30820 7.43043 7.49912 7.75245 7.91520 8.30522 8.55836 8.64891 9.07628 9.65613 11.10339 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.044061 B = 0.007276 C = 0.006967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.337168 B = 3847.417887 C = 4017.990388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.212 3.788 3 H 0.034 0.966 4 C -0.493 4.493 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.673 5.673 13 C 0.062 3.938 14 H 0.035 0.965 15 C 0.064 3.936 16 N -0.531 5.531 17 C 0.053 3.947 18 C -0.147 4.147 19 C -0.092 4.092 20 C -0.139 4.139 21 C 0.060 3.940 22 H 0.088 0.912 23 H 0.026 0.974 24 H 0.002 0.998 25 H 0.259 0.741 26 H 0.322 0.678 27 H 0.094 0.906 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.638 -1.269 13.062 13.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.104 3.896 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.303 5.303 13 C -0.050 4.050 14 H 0.053 0.947 15 C -0.065 4.065 16 N -0.252 5.252 17 C -0.076 4.076 18 C -0.187 4.187 19 C -0.112 4.112 20 C -0.178 4.178 21 C -0.069 4.069 22 H 0.107 0.893 23 H 0.045 0.955 24 H 0.021 0.979 25 H 0.069 0.931 26 H 0.139 0.861 27 H 0.112 0.888 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.719 -0.782 12.718 13.274 hybrid contribution -1.738 -0.750 -0.643 1.999 sum 1.981 -1.532 12.076 12.333 Atomic orbital electron populations 1.22432 1.00957 0.99035 1.00337 1.19189 0.89372 0.94441 0.86604 0.94851 1.21152 1.30097 1.12343 0.89613 0.92013 1.24950 0.95382 0.95192 0.99029 1.69884 1.37436 1.23182 1.23281 0.86526 0.79225 0.79235 0.82561 1.20923 1.21395 1.19884 1.61001 1.57688 1.08617 1.03044 1.22122 0.97587 0.94924 0.90396 0.94668 1.22386 0.93308 0.98578 0.92205 1.62633 1.43830 1.16335 1.02372 1.22166 0.92560 0.99164 0.93734 1.22251 0.99310 0.98935 0.98155 1.21318 0.98658 0.96372 0.94816 1.22382 0.95606 0.98168 1.01622 1.22363 0.96035 0.86714 1.01762 0.89311 0.95488 0.97850 0.93119 0.86078 0.88789 0.91715 0.91103 0.91276 0.92044 0.92116 0.91392 0.93031 0.90203 0.90450 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 8.92 37.16 0.33 -3.75 16 2 C 0.21 5.27 2.39 -68.87 -0.16 5.11 16 3 H 0.03 0.92 7.66 -51.93 -0.40 0.52 16 4 C -0.49 -13.60 8.84 -34.44 -0.30 -13.90 16 5 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.80 11.32 55.43 0.63 -25.17 16 8 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.67 -13.99 5.13 -100.66 -0.52 -14.50 16 13 C 0.06 1.11 2.27 -67.43 -0.15 0.96 16 14 H 0.04 0.69 7.12 -51.93 -0.37 0.32 16 15 C 0.06 1.12 5.62 -3.59 -0.02 1.10 16 16 N -0.53 -8.07 5.22 -232.97 -1.22 -9.29 16 17 C 0.05 0.68 6.09 -3.73 -0.02 0.65 16 18 C -0.15 -1.87 5.77 -26.46 -0.15 -2.03 16 19 C -0.09 -1.37 2.78 -90.01 -0.25 -1.62 16 20 C -0.14 -1.94 5.73 -25.60 -0.15 -2.09 16 21 C 0.06 0.85 6.14 -2.87 -0.02 0.83 16 22 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 23 H 0.03 0.62 8.13 -51.93 -0.42 0.20 16 24 H 0.00 0.06 7.43 -51.92 -0.39 -0.33 16 25 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.32 6.50 7.95 -39.29 -0.31 6.19 16 27 H 0.09 1.89 7.86 -51.93 -0.41 1.49 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 1.23 7.48 -51.93 -0.39 0.84 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 281.48 15.07 4.24 4.24 Total: -1.00 -27.78 281.48 -9.23 -37.01 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -6.35 Total: 4.44 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -0.99 Total: -13.30 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: -1.11 Total: -48.96 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -27.78 -9.23 -37.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871314.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.233 kcal (2) G-P(sol) polarization free energy of solvation -27.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds