Wall clock time and date at job start Mon Mar 30 2020 02:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46872 * 2 1 4 4 C 1.50696 * 109.47261 * 239.99475 * 2 1 3 5 5 H 1.07995 * 120.00499 * 335.25890 * 4 2 1 6 6 C 1.37882 * 119.99615 * 155.26408 * 4 2 1 7 7 N 1.31513 * 120.00093 * 355.14948 * 6 4 2 8 8 Si 1.86801 * 119.99740 * 175.14937 * 6 4 2 9 9 H 1.48500 * 109.47140 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47190 * 239.99613 * 8 6 4 11 11 H 1.48501 * 109.46663 * 119.99882 * 8 6 4 12 12 N 1.46903 * 109.46480 * 119.99452 * 2 1 3 13 13 C 1.46591 * 111.00314 * 61.16397 * 12 2 1 14 14 C 1.53695 * 111.03454 * 180.11768 * 13 12 2 15 15 N 1.45633 * 107.51070 * 56.21907 * 14 13 12 16 16 C 1.46941 * 117.17354 * 179.43718 * 15 14 13 17 17 C 1.55276 * 103.40088 * 162.53173 * 16 15 14 18 18 C 1.55066 * 104.90959 * 335.92367 * 17 16 15 19 19 C 1.48864 * 108.89655 * 296.47433 * 15 14 13 20 20 H 1.08995 * 110.30681 * 308.25166 * 19 15 14 21 21 C 1.47589 * 111.00155 * 294.99710 * 12 2 1 22 22 H 1.08996 * 109.47434 * 294.99573 * 1 2 3 23 23 H 1.09008 * 109.46479 * 54.99595 * 1 2 3 24 24 H 1.09000 * 109.47182 * 174.98585 * 1 2 3 25 25 H 0.96997 * 119.99866 * 5.12820 * 7 6 4 26 26 H 1.08997 * 109.16134 * 300.52003 * 13 12 2 27 27 H 1.09003 * 109.16397 * 59.71556 * 13 12 2 28 28 H 1.09004 * 109.84734 * 296.72203 * 14 13 12 29 29 H 1.08999 * 109.90617 * 175.75860 * 14 13 12 30 30 H 1.08999 * 110.63895 * 281.01457 * 16 15 14 31 31 H 1.09000 * 110.63336 * 44.05171 * 16 15 14 32 32 H 1.08999 * 110.35388 * 94.78556 * 17 16 15 33 33 H 1.09010 * 110.35298 * 216.96342 * 17 16 15 34 34 H 1.09007 * 110.50915 * 238.55245 * 18 17 16 35 35 H 1.09006 * 110.50489 * 115.86257 * 18 17 16 36 36 H 1.08998 * 109.87039 * 302.08869 * 21 12 2 37 37 H 1.09009 * 109.86387 * 63.13048 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 1.4116 -1.4457 -1.7207 6 6 3.2847 -0.4220 -1.7299 7 7 4.0022 0.5395 -1.1911 8 14 3.9622 -1.3969 -3.1722 9 1 2.9664 -2.4149 -3.5930 10 1 5.2203 -2.0729 -2.7654 11 1 4.2384 -0.4773 -4.3050 12 7 2.0195 -0.6924 1.1996 13 6 1.5723 -2.0883 1.2198 14 6 2.0816 -2.8126 2.4760 15 7 1.6231 -2.0572 3.6336 16 6 1.9852 -2.5760 4.9598 17 6 1.7634 -1.3572 5.8959 18 6 1.8922 -0.1172 4.9738 19 6 2.2465 -0.7057 3.6050 20 1 3.3270 -0.7898 3.4888 21 6 1.6468 0.0428 2.4238 22 1 -0.3634 0.4342 0.9314 23 1 -0.3632 0.5896 -0.8419 24 1 -0.3633 -1.0237 -0.0898 25 1 3.6832 0.9957 -0.3967 26 1 0.4827 -2.1151 1.2082 27 1 1.9513 -2.5983 0.3341 28 1 3.1710 -2.8494 2.4659 29 1 1.6776 -3.8244 2.5105 30 1 1.3307 -3.4009 5.2415 31 1 3.0290 -2.8893 4.9779 32 1 0.7692 -1.3970 6.3410 33 1 2.5259 -1.3334 6.6746 34 1 2.6887 0.5389 5.3251 35 1 0.9461 0.4219 4.9244 36 1 2.0483 1.0554 2.3845 37 1 0.5615 0.0771 2.5193 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082687430.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:01 Heat of formation + Delta-G solvation = -10.171654 kcal Electronic energy + Delta-G solvation = -16536.478834 eV Core-core repulsion = 14119.498692 eV Total energy + Delta-G solvation = -2416.980142 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.00801 -38.16415 -34.83836 -33.61379 -31.90383 -29.89684 -28.57925 -26.74134 -24.79405 -23.87179 -22.20704 -21.47933 -20.52991 -18.58646 -16.83575 -16.51039 -16.32739 -15.99100 -15.66131 -15.58986 -15.15683 -14.39431 -14.30732 -13.80737 -13.47247 -13.37868 -12.98703 -12.72945 -12.64905 -12.32241 -12.07309 -12.00729 -11.91655 -11.80568 -11.70402 -11.45293 -11.35934 -10.63502 -10.37033 -9.43952 -8.76006 -8.51386 -6.25942 1.53998 1.62689 1.78337 2.59436 3.00720 3.08084 3.53944 3.68734 3.81039 4.01534 4.24123 4.29273 4.36018 4.37442 4.43246 4.50741 4.62700 4.64566 4.66637 4.73661 4.77064 4.90897 4.97215 5.01538 5.02516 5.13129 5.20157 5.28861 5.31402 5.39892 5.85358 5.98530 6.21979 6.25847 6.60302 6.66018 6.85410 7.59072 8.86548 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.039783 B = 0.008003 C = 0.007704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.654762 B = 3497.926755 C = 3633.713577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.191 3.809 3 H 0.014 0.986 4 C -0.594 4.594 5 H 0.040 0.960 6 C -0.016 4.016 7 N -0.929 5.929 8 Si 1.114 2.886 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.280 1.280 12 N -0.553 5.553 13 C 0.085 3.915 14 C 0.065 3.935 15 N -0.535 5.535 16 C 0.039 3.961 17 C -0.110 4.110 18 C -0.111 4.111 19 C 0.067 3.933 20 H 0.033 0.967 21 C 0.070 3.930 22 H 0.043 0.957 23 H 0.045 0.955 24 H 0.042 0.958 25 H 0.261 0.739 26 H 0.021 0.979 27 H 0.059 0.941 28 H 0.022 0.978 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.036 0.964 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.392 -4.906 12.404 14.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.086 3.914 3 H 0.032 0.968 4 C -0.632 4.632 5 H 0.058 0.942 6 C -0.217 4.217 7 N -0.565 5.565 8 Si 0.938 3.062 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.206 1.206 12 N -0.278 5.278 13 C -0.044 4.044 14 C -0.064 4.064 15 N -0.261 5.261 16 C -0.089 4.089 17 C -0.148 4.148 18 C -0.149 4.149 19 C -0.041 4.041 20 H 0.051 0.949 21 C -0.058 4.058 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.039 0.961 27 H 0.077 0.923 28 H 0.041 0.959 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.054 0.946 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.184 -5.053 11.297 12.778 hybrid contribution -1.134 0.256 0.772 1.396 sum -4.318 -4.797 12.069 13.686 Atomic orbital electron populations 1.22186 0.99062 1.00279 0.99682 1.19284 0.89995 0.93680 0.88487 0.96825 1.22078 1.03341 1.26123 1.11693 0.94188 1.27051 0.94474 0.96173 1.03957 1.70776 1.41792 1.21888 1.22078 0.82973 0.75496 0.74891 0.72875 1.19843 1.21071 1.20628 1.62199 1.61602 1.02036 1.01988 1.21696 0.96427 0.89630 0.96633 1.22042 0.97069 0.97456 0.89822 1.63944 1.56481 1.03517 1.02129 1.22939 0.99035 0.98699 0.88198 1.22542 1.03272 0.92133 0.96865 1.22116 1.02351 0.98106 0.92372 1.22398 0.95806 0.90490 0.95437 0.94928 1.21939 0.97375 0.96554 0.89953 0.93764 0.93598 0.93860 0.92802 0.96113 0.92285 0.95940 0.88981 0.89053 0.94571 0.89924 0.89586 0.90215 0.90793 0.92626 0.94841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.76 8.51 71.98 0.61 -6.15 16 2 C 0.19 9.82 2.07 44.17 0.09 9.91 16 3 H 0.01 0.78 6.66 -2.38 -0.02 0.77 16 4 C -0.59 -33.35 7.03 25.60 0.18 -33.18 16 5 H 0.04 2.25 7.81 -2.91 -0.02 2.23 16 6 C -0.02 -0.90 5.45 84.66 0.46 -0.44 16 7 N -0.93 -57.28 13.63 21.45 0.29 -56.99 16 8 Si 1.11 51.17 29.91 68.60 2.05 53.22 16 9 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 N -0.55 -25.88 4.60 -874.59 -4.02 -29.90 16 13 C 0.08 3.60 5.00 86.60 0.43 4.04 16 14 C 0.06 2.28 6.04 86.78 0.52 2.80 16 15 N -0.54 -17.05 4.85 -864.38 -4.19 -21.24 16 16 C 0.04 0.94 6.74 87.08 0.59 1.52 16 17 C -0.11 -2.22 7.06 32.08 0.23 -1.99 16 18 C -0.11 -2.75 6.66 31.35 0.21 -2.54 16 19 C 0.07 2.26 2.62 44.30 0.12 2.37 16 20 H 0.03 1.24 8.00 -2.39 -0.02 1.22 16 21 C 0.07 2.78 4.86 85.89 0.42 3.19 16 22 H 0.04 1.77 6.37 -2.39 -0.02 1.75 16 23 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 24 H 0.04 1.88 6.69 -2.39 -0.02 1.86 16 25 H 0.26 16.46 6.66 -92.71 -0.62 15.84 16 26 H 0.02 0.88 6.39 -2.39 -0.02 0.87 16 27 H 0.06 2.78 7.02 -2.39 -0.02 2.76 16 28 H 0.02 0.85 8.02 -2.38 -0.02 0.83 16 29 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.09 1.91 8.14 -2.39 -0.02 1.90 16 31 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.07 1.79 8.02 -2.38 -0.02 1.77 16 36 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.03 1.32 6.53 -2.38 -0.02 1.30 16 Total: -1.00 -63.88 279.63 -0.84 -64.72 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 1.17 Total: 10.65 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: 3.86 Total: -20.45 kcal Atomic # 7 Polarization: -100.21 SS G_CDS: -7.92 Total: -108.13 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 2.05 Total: 53.22 kcal Total: -63.88 -0.84 -64.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082687430.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.544 kcal (2) G-P(sol) polarization free energy of solvation -63.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds