Wall clock time and date at job start Mon Mar 30 2020 03:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.48062 * 110.99917 * 2 1 4 4 C 1.50739 * 112.93598 * 192.21834 * 3 2 1 5 5 C 1.54512 * 108.94368 * 92.64956 * 4 3 2 6 6 N 1.40081 * 111.51089 * 283.98973 * 5 4 3 7 7 C 1.46906 * 111.00152 * 188.14802 * 6 5 4 8 8 C 1.53002 * 117.49799 * 124.79104 * 7 6 5 9 9 C 1.53000 * 117.49653 * 56.13536 * 7 6 5 10 10 C 1.47685 * 114.57292 * 61.44916 * 6 5 4 11 11 C 1.47749 * 110.99932 * 232.39802 * 2 1 3 12 12 H 1.09000 * 108.99128 * 205.48780 * 11 2 1 13 13 C 1.50703 * 108.99054 * 324.31623 * 11 2 1 14 14 H 1.07998 * 120.00010 * 119.99949 * 13 11 2 15 15 C 1.37879 * 120.00129 * 299.99613 * 13 11 2 16 16 N 1.31508 * 119.99831 * 180.02562 * 15 13 11 17 17 Si 1.86802 * 119.99774 * 0.02562 * 15 13 11 18 18 H 1.48493 * 109.47473 * 89.99960 * 17 15 13 19 19 H 1.48501 * 109.46878 * 209.99741 * 17 15 13 20 20 H 1.48506 * 109.47353 * 329.99510 * 17 15 13 21 21 H 1.08996 * 109.47229 * 63.95669 * 1 2 3 22 22 H 1.09002 * 109.47016 * 183.95235 * 1 2 3 23 23 H 1.08998 * 109.47035 * 303.95580 * 1 2 3 24 24 H 1.09003 * 108.78854 * 71.32521 * 3 2 1 25 25 H 1.09001 * 108.70186 * 313.05109 * 3 2 1 26 26 H 1.09000 * 109.56280 * 332.81057 * 4 3 2 27 27 H 1.09000 * 109.56293 * 212.48662 * 4 3 2 28 28 H 1.09007 * 109.07409 * 163.46711 * 5 4 3 29 29 H 1.08996 * 109.01848 * 44.48173 * 5 4 3 30 30 H 1.08998 * 115.54836 * 270.46239 * 7 6 5 31 31 H 1.09000 * 117.49996 * 0.02562 * 8 7 6 32 32 H 1.08999 * 117.49664 * 145.02062 * 8 7 6 33 33 H 1.09000 * 117.49640 * 214.98222 * 9 7 6 34 34 H 1.08999 * 117.49942 * 359.97356 * 9 7 6 35 35 H 1.08999 * 109.73442 * 38.33732 * 10 6 5 36 36 H 1.09001 * 109.73893 * 159.03490 * 10 6 5 37 37 H 0.97001 * 119.99708 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9997 1.3823 0.0000 4 6 3.4768 1.4445 -0.2938 5 6 3.6782 1.6432 -1.8128 6 7 3.4536 0.4554 -2.5205 7 6 3.8329 0.6036 -3.9319 8 6 4.8391 -0.3981 -4.5020 9 6 5.2652 1.0477 -4.2356 10 6 2.0850 -0.0853 -2.3942 11 6 1.9985 -0.8416 -1.0928 12 1 2.9942 -1.1917 -0.8204 13 6 1.0937 -2.0327 -1.2770 14 1 0.6022 -2.1960 -2.2247 15 6 0.8933 -2.9138 -0.2356 16 7 0.1041 -3.9534 -0.3965 17 14 1.7429 -2.6309 1.4038 18 1 0.8765 -1.7944 2.2725 19 1 1.9920 -3.9375 2.0642 20 1 3.0358 -1.9360 1.1780 21 1 -0.3633 0.4512 -0.9233 22 1 -0.3633 -1.0252 0.0708 23 1 -0.3633 0.5740 0.8524 24 1 1.8170 1.8284 0.9776 25 1 1.4669 1.9611 -0.7545 26 1 3.9506 0.5138 0.0184 27 1 3.9213 2.2808 0.2457 28 1 4.6989 1.9793 -1.9959 29 1 2.9838 2.4053 -2.1664 30 1 3.0445 0.9583 -4.5958 31 1 5.2192 -1.1675 -3.8299 32 1 4.7128 -0.7022 -5.5411 33 1 5.4191 1.6943 -5.0995 34 1 5.9259 1.2302 -3.3881 35 1 1.3648 0.7328 -2.3930 36 1 1.8770 -0.7585 -3.2259 37 1 -0.0372 -4.5731 0.3362 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219415202.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:50 Heat of formation + Delta-G solvation = 34.415774 kcal Electronic energy + Delta-G solvation = -16705.277502 eV Core-core repulsion = 14290.230816 eV Total energy + Delta-G solvation = -2415.046686 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.85624 -38.27837 -35.48253 -34.39865 -33.05862 -29.89682 -28.05248 -25.46169 -25.24853 -23.18305 -22.40178 -21.23169 -20.42137 -18.78955 -17.49722 -16.94688 -16.76217 -16.02716 -15.61998 -15.32708 -15.07105 -14.57970 -14.11402 -13.89546 -13.67831 -13.43709 -13.06304 -12.59520 -12.36971 -12.24977 -12.22649 -11.96040 -11.76451 -11.62336 -11.46871 -11.35374 -11.09173 -10.96176 -10.66031 -9.21123 -8.75568 -8.25340 -6.31483 1.48875 1.53213 1.70953 2.50143 2.87121 2.93852 2.97870 3.47819 3.93809 4.01010 4.05931 4.14109 4.20216 4.35652 4.42774 4.53314 4.59992 4.69753 4.77276 4.79757 4.82799 4.87320 4.96882 5.01434 5.09613 5.12554 5.34231 5.34441 5.36526 5.47074 5.66965 6.07583 6.23397 6.47092 6.59734 6.63049 6.85262 7.38620 8.87145 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.030243 B = 0.010568 C = 0.009167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.610942 B = 2648.880002 C = 3053.638418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.568 5.568 3 C 0.056 3.944 4 C -0.119 4.119 5 C 0.078 3.922 6 N -0.538 5.538 7 C -0.010 4.010 8 C -0.171 4.171 9 C -0.150 4.150 10 C 0.080 3.920 11 C 0.193 3.807 12 H 0.040 0.960 13 C -0.516 4.516 14 H 0.034 0.966 15 C 0.036 3.964 16 N -0.942 5.942 17 Si 0.976 3.024 18 H -0.272 1.272 19 H -0.320 1.320 20 H -0.259 1.259 21 H 0.010 0.990 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.075 0.925 25 H 0.024 0.976 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.015 0.985 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.100 0.900 35 H 0.022 0.978 36 H 0.056 0.944 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.838 13.544 -3.129 16.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.295 5.295 3 C -0.070 4.070 4 C -0.157 4.157 5 C -0.051 4.051 6 N -0.262 5.262 7 C -0.118 4.118 8 C -0.209 4.209 9 C -0.187 4.187 10 C -0.048 4.048 11 C 0.087 3.913 12 H 0.058 0.942 13 C -0.555 4.555 14 H 0.052 0.948 15 C -0.163 4.163 16 N -0.582 5.582 17 Si 0.805 3.195 18 H -0.197 1.197 19 H -0.250 1.250 20 H -0.184 1.184 21 H 0.028 0.972 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.093 0.907 25 H 0.042 0.958 26 H 0.077 0.923 27 H 0.121 0.879 28 H 0.108 0.892 29 H 0.033 0.967 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.124 0.876 33 H 0.135 0.865 34 H 0.118 0.882 35 H 0.041 0.959 36 H 0.075 0.925 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.203 12.923 -2.435 16.051 hybrid contribution -1.076 0.314 -0.416 1.196 sum 8.126 13.237 -2.850 15.791 Atomic orbital electron populations 1.22061 0.88093 1.01914 0.98076 1.62174 1.07701 1.12163 1.47442 1.21921 0.95780 0.88776 1.00572 1.21613 0.95352 1.03047 0.95672 1.21087 1.01305 0.89312 0.93397 1.58757 1.25329 1.32212 1.09895 1.22421 0.93543 1.06771 0.89111 1.23093 1.02789 0.93416 1.01556 1.23134 0.94630 0.97322 1.03630 1.22029 0.86627 0.96638 0.99552 1.19304 0.95498 0.90227 0.86269 0.94225 1.21164 1.28260 1.07673 0.98420 0.94810 1.25696 0.94573 0.93696 1.02369 1.70065 1.39107 1.15047 1.33978 0.85247 0.80708 0.74264 0.79263 1.19729 1.24960 1.18363 0.97175 0.92193 0.92163 0.90666 0.95795 0.92290 0.87875 0.89226 0.96713 0.89841 0.89806 0.87633 0.86518 0.88157 0.95937 0.92537 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.02 8.19 127.69 1.05 3.07 16 2 N -0.57 -24.52 2.82 -904.83 -2.55 -27.08 16 3 C 0.06 1.91 5.01 85.35 0.43 2.33 16 4 C -0.12 -3.54 5.68 30.37 0.17 -3.37 16 5 C 0.08 2.23 4.89 88.05 0.43 2.66 16 6 N -0.54 -18.42 4.12 -886.93 -3.66 -22.07 16 7 C -0.01 -0.30 5.07 44.92 0.23 -0.07 16 8 C -0.17 -4.42 10.46 30.62 0.32 -4.10 16 9 C -0.15 -3.19 9.64 30.62 0.30 -2.90 16 10 C 0.08 3.30 4.82 85.43 0.41 3.71 16 11 C 0.19 9.17 1.22 43.28 0.05 9.22 16 12 H 0.04 2.05 6.15 -2.39 -0.01 2.03 16 13 C -0.52 -29.35 7.36 25.60 0.19 -29.16 16 14 H 0.03 2.12 7.70 -2.91 -0.02 2.10 16 15 C 0.04 2.11 4.29 84.66 0.36 2.48 16 16 N -0.94 -58.83 13.96 21.45 0.30 -58.53 16 17 Si 0.98 49.29 25.07 68.60 1.72 51.01 16 18 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 19 H -0.32 -16.25 7.11 99.48 0.71 -15.55 16 20 H -0.26 -12.78 6.51 99.48 0.65 -12.13 16 21 H 0.01 0.41 7.73 -2.39 -0.02 0.40 16 22 H 0.06 3.04 5.02 -2.39 -0.01 3.03 16 23 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 24 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.02 0.80 6.40 -2.39 -0.02 0.78 16 26 H 0.06 2.09 7.19 -2.39 -0.02 2.08 16 27 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.09 2.16 6.41 -2.38 -0.02 2.14 16 29 H 0.01 0.42 7.59 -2.39 -0.02 0.40 16 30 H 0.08 2.36 8.12 -2.39 -0.02 2.34 16 31 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.12 1.89 8.14 -2.39 -0.02 1.88 16 34 H 0.10 2.08 7.19 -2.39 -0.02 2.07 16 35 H 0.02 0.92 6.29 -2.39 -0.02 0.91 16 36 H 0.06 2.53 7.21 -2.39 -0.02 2.51 16 37 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -64.65 273.47 0.71 -63.94 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 0.97 Total: 8.86 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 3.93 Total: -16.12 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -5.91 Total: -107.68 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 1.72 Total: 51.01 kcal Total: -64.65 0.71 -63.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219415202.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.352 kcal (2) G-P(sol) polarization free energy of solvation -64.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds