Wall clock time and date at job start Mon Mar 30 2020 03:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36938 * 120.00103 * 2 1 4 4 H 1.08002 * 119.99588 * 203.14477 * 3 2 1 5 5 C 1.38812 * 119.99884 * 23.14579 * 3 2 1 6 6 N 1.31615 * 120.00475 * 11.66480 * 5 3 2 7 7 Si 1.86800 * 119.99690 * 191.66722 * 5 3 2 8 8 H 1.48504 * 109.47074 * 90.00067 * 7 5 3 9 9 H 1.48500 * 109.46958 * 209.99564 * 7 5 3 10 10 H 1.48495 * 109.47100 * 329.99983 * 7 5 3 11 11 C 1.46501 * 119.99870 * 179.97438 * 2 1 3 12 12 H 1.08996 * 109.50124 * 179.97438 * 11 2 1 13 13 C 1.53126 * 109.50230 * 300.00441 * 11 2 1 14 14 C 1.53122 * 109.15711 * 177.63557 * 13 11 2 15 15 C 1.53033 * 109.28025 * 302.34501 * 14 13 11 16 16 N 1.46843 * 109.52587 * 59.17976 * 15 14 13 17 17 C 1.46903 * 111.00447 * 174.16536 * 16 15 14 18 18 C 1.52997 * 117.50078 * 124.66633 * 17 16 15 19 19 C 1.52999 * 60.00038 * 252.51283 * 18 17 16 20 20 C 1.46848 * 111.19751 * 298.25826 * 16 15 14 21 21 H 1.08994 * 109.47527 * 273.92497 * 1 2 3 22 22 H 1.09007 * 109.46918 * 33.92629 * 1 2 3 23 23 H 1.09002 * 109.47068 * 153.92016 * 1 2 3 24 24 H 0.96998 * 120.00322 * 180.02562 * 6 5 3 25 25 H 1.08993 * 109.52261 * 57.73229 * 13 11 2 26 26 H 1.09001 * 109.57195 * 297.56909 * 13 11 2 27 27 H 1.09002 * 109.50251 * 182.40004 * 14 13 11 28 28 H 1.09004 * 109.50545 * 62.28761 * 14 13 11 29 29 H 1.08996 * 109.46734 * 179.20350 * 15 14 13 30 30 H 1.09010 * 109.46226 * 299.16514 * 15 14 13 31 31 H 1.09003 * 115.54691 * 270.38262 * 17 16 15 32 32 H 1.08998 * 117.49832 * 0.02562 * 18 17 16 33 33 H 1.09002 * 117.49714 * 145.02604 * 18 17 16 34 34 H 1.09011 * 117.50068 * 252.51476 * 19 18 17 35 35 H 1.08997 * 117.52167 * 107.48167 * 19 18 17 36 36 H 1.08993 * 109.46622 * 301.72652 * 20 16 15 37 37 H 1.08998 * 109.46479 * 181.75365 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1645 1.2234 -0.3676 5 6 1.5394 2.3397 0.4725 6 7 0.4008 2.2608 1.1279 7 14 2.3344 4.0043 0.1783 8 1 1.8429 4.5676 -1.1049 9 1 1.9826 4.9242 1.2897 10 1 3.8094 3.8443 0.1160 11 6 2.1975 -1.2688 0.0006 12 1 3.2692 -1.0702 0.0000 13 6 1.8280 -2.0718 1.2509 14 6 2.5520 -3.4205 1.2140 15 6 2.1698 -4.1643 -0.0676 16 7 2.5442 -3.3555 -1.2347 17 6 2.3190 -4.0965 -2.4830 18 6 1.4281 -3.4432 -3.5414 19 6 0.9113 -4.6387 -2.7385 20 6 1.8255 -2.0750 -1.2459 21 1 -0.3634 0.0703 1.0252 22 1 -0.3633 0.8528 -0.5736 23 1 -0.3633 -0.9230 -0.4518 24 1 -0.0258 3.0671 1.4577 25 1 0.7509 -2.2371 1.2725 26 1 2.1299 -1.5205 2.1414 27 1 2.2599 -4.0142 2.0803 28 1 3.6294 -3.2558 1.2317 29 1 2.6946 -5.1189 -0.1038 30 1 1.0942 -4.3409 -0.0781 31 1 3.1601 -4.6953 -2.8324 32 1 1.0094 -2.4634 -3.3117 33 1 1.6830 -3.6121 -4.5877 34 1 0.8263 -5.5941 -3.2565 35 1 0.1524 -4.4459 -1.9802 36 1 0.7516 -2.2613 -1.2508 37 1 2.1004 -1.5120 -2.1379 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259205897.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:38 Heat of formation + Delta-G solvation = 55.176975 kcal Electronic energy + Delta-G solvation = -16331.170054 eV Core-core repulsion = 13917.023641 eV Total energy + Delta-G solvation = -2414.146413 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.44717 -36.44609 -34.39315 -31.43808 -30.72128 -28.51581 -25.95208 -24.21432 -23.60163 -22.26293 -20.95111 -20.10108 -18.57422 -16.69259 -16.29465 -15.27776 -14.81341 -14.35980 -13.86819 -13.61837 -13.26700 -13.03929 -12.60561 -12.33823 -11.93520 -11.77996 -11.36100 -10.89934 -10.87588 -10.74491 -10.62944 -10.41921 -10.25627 -10.11733 -10.04781 -9.84018 -9.69146 -9.52757 -8.49833 -7.94850 -6.69516 -5.67137 -3.13247 3.41693 3.47767 3.49340 3.83128 4.13456 4.56383 4.90323 4.99796 5.03739 5.32337 5.41712 5.48107 5.56269 5.67322 5.70719 5.80744 5.87596 5.94473 6.04430 6.14894 6.18507 6.29759 6.32947 6.38389 6.57136 6.62652 6.80288 7.05700 7.10662 7.41416 7.44018 7.46438 7.77930 7.86318 8.46496 9.29715 9.93237 10.42550 11.38022 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.036802 B = 0.007617 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.651065 B = 3674.975286 C = 3951.463308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.595 5.595 3 C -0.252 4.252 4 H 0.069 0.931 5 C 0.001 3.999 6 N -0.910 5.910 7 Si 0.905 3.095 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.279 1.279 11 C 0.183 3.817 12 H 0.069 0.931 13 C -0.132 4.132 14 C -0.115 4.115 15 C 0.062 3.938 16 N -0.506 5.506 17 C 0.026 3.974 18 C -0.188 4.188 19 C -0.216 4.216 20 C 0.042 3.958 21 H 0.028 0.972 22 H 0.042 0.958 23 H -0.006 1.006 24 H 0.251 0.749 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.029 0.971 31 H 0.120 0.880 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.029 0.971 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.763 -12.690 -4.653 13.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.317 5.317 3 C -0.381 4.381 4 H 0.087 0.913 5 C -0.197 4.197 6 N -0.555 5.555 7 Si 0.735 3.265 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.074 3.926 12 H 0.087 0.913 13 C -0.172 4.172 14 C -0.154 4.154 15 C -0.065 4.065 16 N -0.230 5.230 17 C -0.084 4.084 18 C -0.225 4.225 19 C -0.255 4.255 20 C -0.087 4.087 21 H 0.046 0.954 22 H 0.060 0.940 23 H 0.013 0.987 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.047 0.953 31 H 0.137 0.863 32 H 0.123 0.877 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.047 0.953 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.162 -12.404 -4.524 13.379 hybrid contribution -0.693 0.762 -0.190 1.047 sum 1.469 -11.642 -4.713 12.646 Atomic orbital electron populations 1.20738 0.82956 0.95229 0.99106 1.43925 1.01702 1.00292 1.85795 1.19270 0.98362 0.85498 1.34992 0.91319 1.25023 0.97862 0.98491 0.98366 1.70067 1.18743 1.27060 1.39636 0.86246 0.78852 0.84161 0.77249 1.21592 1.21810 1.20464 1.20283 0.96478 0.85648 0.90169 0.91262 1.22152 0.99430 0.94765 1.00877 1.21597 1.01277 0.96905 0.95588 1.22028 0.98000 0.96038 0.90479 1.61967 1.57086 1.03807 1.00096 1.22875 0.92484 1.00489 0.92536 1.23341 1.04004 0.98317 0.96873 1.23346 0.99716 0.98227 1.04241 1.22856 0.95323 0.89058 1.01474 0.95416 0.93957 0.98735 0.93854 0.93103 0.91846 0.92298 0.91435 0.91473 0.95271 0.86261 0.87695 0.88670 0.88962 0.89131 0.95278 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.13 7.97 59.85 0.48 4.61 16 2 N -0.60 -15.17 2.82 -173.38 -0.49 -15.65 16 3 C -0.25 -7.03 9.59 -15.06 -0.14 -7.17 16 4 H 0.07 1.89 7.82 -52.49 -0.41 1.48 16 5 C 0.00 0.01 5.12 -17.43 -0.09 -0.07 16 6 N -0.91 -26.89 10.65 55.49 0.59 -26.30 16 7 Si 0.90 22.18 29.57 -169.99 -5.03 17.16 16 8 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 9 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 C 0.18 3.89 2.75 -67.84 -0.19 3.70 16 12 H 0.07 1.55 7.87 -51.93 -0.41 1.14 16 13 C -0.13 -2.54 5.32 -26.60 -0.14 -2.68 16 14 C -0.12 -1.76 6.09 -26.65 -0.16 -1.92 16 15 C 0.06 0.90 5.14 -3.84 -0.02 0.88 16 16 N -0.51 -8.02 4.88 -226.69 -1.11 -9.12 16 17 C 0.03 0.34 6.34 -67.71 -0.43 -0.09 16 18 C -0.19 -2.44 9.39 -26.73 -0.25 -2.69 16 19 C -0.22 -2.64 9.52 -26.73 -0.25 -2.90 16 20 C 0.04 0.78 3.36 -3.83 -0.01 0.76 16 21 H 0.03 0.75 7.41 -51.93 -0.39 0.37 16 22 H 0.04 1.14 7.23 -51.93 -0.38 0.77 16 23 H -0.01 -0.13 6.41 -51.93 -0.33 -0.46 16 24 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.05 1.00 7.60 -51.93 -0.39 0.61 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 30 H 0.03 0.43 7.13 -51.92 -0.37 0.06 16 31 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.10 1.56 5.84 -51.93 -0.30 1.25 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 35 H 0.09 1.21 7.26 -51.93 -0.38 0.84 16 36 H 0.03 0.56 6.00 -51.93 -0.31 0.25 16 37 H 0.07 1.46 6.92 -51.93 -0.36 1.10 16 LS Contribution 282.61 15.07 4.26 4.26 Total: -1.00 -29.17 282.61 -9.11 -38.28 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -6.12 Total: -1.05 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -1.21 Total: -7.56 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -1.00 Total: -51.08 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.17 -9.11 -38.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259205897.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.452 kcal (2) G-P(sol) polarization free energy of solvation -29.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds