Wall clock time and date at job start Mon Mar 30 2020 03:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36938 * 120.00103 * 2 1 4 4 H 1.08002 * 119.99588 * 203.14477 * 3 2 1 5 5 C 1.38812 * 119.99884 * 23.14579 * 3 2 1 6 6 N 1.31615 * 120.00475 * 11.66480 * 5 3 2 7 7 Si 1.86800 * 119.99690 * 191.66722 * 5 3 2 8 8 H 1.48504 * 109.47074 * 90.00067 * 7 5 3 9 9 H 1.48500 * 109.46958 * 209.99564 * 7 5 3 10 10 H 1.48495 * 109.47100 * 329.99983 * 7 5 3 11 11 C 1.46501 * 119.99870 * 179.97438 * 2 1 3 12 12 H 1.08996 * 109.50124 * 179.97438 * 11 2 1 13 13 C 1.53126 * 109.50230 * 300.00441 * 11 2 1 14 14 C 1.53122 * 109.15711 * 177.63557 * 13 11 2 15 15 C 1.53033 * 109.28025 * 302.34501 * 14 13 11 16 16 N 1.46843 * 109.52587 * 59.17976 * 15 14 13 17 17 C 1.46903 * 111.00447 * 174.16536 * 16 15 14 18 18 C 1.52997 * 117.50078 * 124.66633 * 17 16 15 19 19 C 1.52999 * 60.00038 * 252.51283 * 18 17 16 20 20 C 1.46848 * 111.19751 * 298.25826 * 16 15 14 21 21 H 1.08994 * 109.47527 * 273.92497 * 1 2 3 22 22 H 1.09007 * 109.46918 * 33.92629 * 1 2 3 23 23 H 1.09002 * 109.47068 * 153.92016 * 1 2 3 24 24 H 0.96998 * 120.00322 * 180.02562 * 6 5 3 25 25 H 1.08993 * 109.52261 * 57.73229 * 13 11 2 26 26 H 1.09001 * 109.57195 * 297.56909 * 13 11 2 27 27 H 1.09002 * 109.50251 * 182.40004 * 14 13 11 28 28 H 1.09004 * 109.50545 * 62.28761 * 14 13 11 29 29 H 1.08996 * 109.46734 * 179.20350 * 15 14 13 30 30 H 1.09010 * 109.46226 * 299.16514 * 15 14 13 31 31 H 1.09003 * 115.54691 * 270.38262 * 17 16 15 32 32 H 1.08998 * 117.49832 * 0.02562 * 18 17 16 33 33 H 1.09002 * 117.49714 * 145.02604 * 18 17 16 34 34 H 1.09011 * 117.50068 * 252.51476 * 19 18 17 35 35 H 1.08997 * 117.52167 * 107.48167 * 19 18 17 36 36 H 1.08993 * 109.46622 * 301.72652 * 20 16 15 37 37 H 1.08998 * 109.46479 * 181.75365 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1645 1.2234 -0.3676 5 6 1.5394 2.3397 0.4725 6 7 0.4008 2.2608 1.1279 7 14 2.3344 4.0043 0.1783 8 1 1.8429 4.5676 -1.1049 9 1 1.9826 4.9242 1.2897 10 1 3.8094 3.8443 0.1160 11 6 2.1975 -1.2688 0.0006 12 1 3.2692 -1.0702 0.0000 13 6 1.8280 -2.0718 1.2509 14 6 2.5520 -3.4205 1.2140 15 6 2.1698 -4.1643 -0.0676 16 7 2.5442 -3.3555 -1.2347 17 6 2.3190 -4.0965 -2.4830 18 6 1.4281 -3.4432 -3.5414 19 6 0.9113 -4.6387 -2.7385 20 6 1.8255 -2.0750 -1.2459 21 1 -0.3634 0.0703 1.0252 22 1 -0.3633 0.8528 -0.5736 23 1 -0.3633 -0.9230 -0.4518 24 1 -0.0258 3.0671 1.4577 25 1 0.7509 -2.2371 1.2725 26 1 2.1299 -1.5205 2.1414 27 1 2.2599 -4.0142 2.0803 28 1 3.6294 -3.2558 1.2317 29 1 2.6946 -5.1189 -0.1038 30 1 1.0942 -4.3409 -0.0781 31 1 3.1601 -4.6953 -2.8324 32 1 1.0094 -2.4634 -3.3117 33 1 1.6830 -3.6121 -4.5877 34 1 0.8263 -5.5941 -3.2565 35 1 0.1524 -4.4459 -1.9802 36 1 0.7516 -2.2613 -1.2508 37 1 2.1004 -1.5120 -2.1379 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259205897.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:38 Heat of formation + Delta-G solvation = 37.265453 kcal Electronic energy + Delta-G solvation = -16331.946756 eV Core-core repulsion = 13917.023641 eV Total energy + Delta-G solvation = -2414.923115 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.74812 -37.98880 -36.01402 -33.34201 -32.06678 -30.24172 -28.06873 -25.54670 -25.31830 -23.53512 -22.24972 -21.49747 -20.05065 -18.74816 -17.66373 -16.79085 -16.34745 -15.82927 -15.50558 -15.05747 -14.92434 -14.60491 -14.28687 -13.83375 -13.60868 -13.01373 -12.89203 -12.82124 -12.56907 -12.39794 -12.18759 -12.04673 -11.92264 -11.79316 -11.45294 -11.37116 -11.22281 -10.99583 -10.63274 -9.20180 -8.77622 -7.83218 -5.32004 1.45830 1.46891 1.56138 2.48275 2.80080 2.95203 3.30277 3.66875 3.87289 4.01088 4.01518 4.06671 4.13368 4.22413 4.42750 4.46989 4.65462 4.71648 4.77211 4.81737 4.86597 4.94398 5.00496 5.08362 5.14693 5.19571 5.24395 5.25135 5.49506 5.51300 5.63465 5.67875 6.09427 6.24506 6.34871 7.14802 7.86872 8.31292 9.20416 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.036802 B = 0.007617 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.651065 B = 3674.975286 C = 3951.463308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.611 5.611 3 C -0.264 4.264 4 H 0.069 0.931 5 C -0.053 4.053 6 N -0.940 5.940 7 Si 0.970 3.030 8 H -0.286 1.286 9 H -0.294 1.294 10 H -0.268 1.268 11 C 0.178 3.822 12 H 0.054 0.946 13 C -0.125 4.125 14 C -0.107 4.107 15 C 0.063 3.937 16 N -0.514 5.514 17 C 0.017 3.983 18 C -0.195 4.195 19 C -0.201 4.201 20 C 0.064 3.936 21 H 0.002 0.998 22 H 0.015 0.985 23 H 0.021 0.979 24 H 0.248 0.752 25 H 0.041 0.959 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.028 0.972 31 H 0.143 0.857 32 H 0.079 0.921 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.020 0.980 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.709 -14.563 -5.518 15.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.334 5.334 3 C -0.394 4.394 4 H 0.087 0.913 5 C -0.248 4.248 6 N -0.587 5.587 7 Si 0.798 3.202 8 H -0.213 1.213 9 H -0.220 1.220 10 H -0.193 1.193 11 C 0.070 3.930 12 H 0.073 0.927 13 C -0.164 4.164 14 C -0.145 4.145 15 C -0.064 4.064 16 N -0.238 5.238 17 C -0.092 4.092 18 C -0.233 4.233 19 C -0.240 4.240 20 C -0.065 4.065 21 H 0.020 0.980 22 H 0.034 0.966 23 H 0.039 0.961 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.115 0.885 30 H 0.047 0.953 31 H 0.160 0.840 32 H 0.098 0.902 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.095 0.905 36 H 0.038 0.962 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.130 -14.319 -5.401 15.621 hybrid contribution -0.968 1.280 0.062 1.606 sum 2.163 -13.039 -5.339 14.255 Atomic orbital electron populations 1.20405 0.83149 0.95275 0.97198 1.44138 1.01860 1.01330 1.86046 1.19585 0.98529 0.86805 1.34468 0.91330 1.25800 0.98584 1.01901 0.98508 1.70233 1.20100 1.27586 1.40791 0.85215 0.78451 0.79672 0.76819 1.21262 1.22024 1.19296 1.20445 0.95163 0.84764 0.92592 0.92727 1.22000 0.99305 0.96631 0.98504 1.21557 1.00754 0.94732 0.97441 1.22096 0.98398 0.96691 0.89205 1.61931 1.56636 1.03272 1.01941 1.23050 0.93952 1.00788 0.91379 1.23350 1.04215 0.97562 0.98137 1.23363 0.98224 0.98929 1.03478 1.22412 0.94850 0.90293 0.98968 0.98019 0.96611 0.96089 0.94291 0.93975 0.94239 0.89743 0.91241 0.88499 0.95331 0.83994 0.90229 0.86535 0.86305 0.90481 0.96174 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.58 7.97 127.77 1.02 10.60 16 2 N -0.61 -31.92 2.82 -702.46 -1.98 -33.90 16 3 C -0.26 -15.04 9.59 84.03 0.81 -14.23 16 4 H 0.07 3.82 7.82 -2.91 -0.02 3.80 16 5 C -0.05 -3.06 5.12 84.86 0.43 -2.63 16 6 N -0.94 -57.11 10.65 21.65 0.23 -56.88 16 7 Si 0.97 46.21 29.57 68.60 2.03 48.24 16 8 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 9 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 C 0.18 7.63 2.75 45.05 0.12 7.75 16 12 H 0.05 2.48 7.87 -2.39 -0.02 2.46 16 13 C -0.12 -4.77 5.32 30.68 0.16 -4.61 16 14 C -0.11 -3.02 6.09 30.65 0.19 -2.84 16 15 C 0.06 1.64 5.14 86.32 0.44 2.09 16 16 N -0.51 -15.23 4.88 -871.12 -4.26 -19.49 16 17 C 0.02 0.40 6.34 44.91 0.28 0.69 16 18 C -0.20 -4.67 9.39 30.59 0.29 -4.38 16 19 C -0.20 -4.31 9.52 30.59 0.29 -4.01 16 20 C 0.06 2.36 3.36 86.33 0.29 2.65 16 21 H 0.00 0.09 7.41 -2.39 -0.02 0.07 16 22 H 0.02 0.86 7.23 -2.38 -0.02 0.84 16 23 H 0.02 0.95 6.41 -2.39 -0.02 0.93 16 24 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 25 H 0.04 1.66 7.60 -2.39 -0.02 1.64 16 26 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 29 H 0.10 2.02 8.12 -2.39 -0.02 2.00 16 30 H 0.03 0.76 7.13 -2.38 -0.02 0.75 16 31 H 0.14 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.08 2.33 5.84 -2.39 -0.01 2.31 16 33 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.12 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.08 1.89 7.26 -2.39 -0.02 1.87 16 36 H 0.02 0.77 6.00 -2.39 -0.01 0.75 16 37 H 0.06 2.37 6.92 -2.39 -0.02 2.35 16 Total: -1.00 -63.64 282.61 1.38 -62.27 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 1.03 Total: 8.69 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 4.33 Total: -8.92 kcal Atomic # 7 Polarization: -104.27 SS G_CDS: -6.00 Total: -110.27 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -63.64 1.38 -62.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259205897.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.531 kcal (2) G-P(sol) polarization free energy of solvation -63.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds