Wall clock time and date at job start Mon Mar 30 2020 03:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47034 * 110.99722 * 2 1 4 4 C 1.52924 * 109.05068 * 176.26104 * 3 2 1 5 5 N 1.47119 * 109.76089 * 58.81494 * 4 3 2 6 6 C 1.47057 * 109.88278 * 177.89789 * 5 4 3 7 7 C 1.52917 * 109.88431 * 184.73338 * 6 5 4 8 8 C 1.53172 * 109.01115 * 300.41210 * 7 6 5 9 9 C 1.53004 * 108.87305 * 58.27570 * 8 7 6 10 10 H 1.09008 * 109.44771 * 62.07639 * 9 8 7 11 11 C 1.50702 * 109.44819 * 182.01140 * 9 8 7 12 12 H 1.07999 * 119.99704 * 119.99734 * 11 9 8 13 13 C 1.37875 * 120.00193 * 300.00389 * 11 9 8 14 14 N 1.31516 * 120.00048 * 179.97438 * 13 11 9 15 15 Si 1.86799 * 120.00028 * 359.97438 * 13 11 9 16 16 H 1.48494 * 109.47123 * 89.99834 * 15 13 11 17 17 H 1.48503 * 109.47097 * 210.00204 * 15 13 11 18 18 H 1.48506 * 109.46791 * 329.99880 * 15 13 11 19 19 C 1.46830 * 111.17347 * 301.59626 * 5 4 3 20 20 H 1.08995 * 109.51563 * 297.06077 * 19 5 4 21 21 C 1.46832 * 111.00239 * 236.65713 * 2 1 3 22 22 H 1.09004 * 109.47030 * 56.04894 * 1 2 3 23 23 H 1.08999 * 109.46628 * 176.05257 * 1 2 3 24 24 H 1.09004 * 109.47288 * 296.04495 * 1 2 3 25 25 H 1.09000 * 109.54208 * 56.38594 * 3 2 1 26 26 H 1.09000 * 109.54070 * 296.12885 * 3 2 1 27 27 H 1.08996 * 109.42238 * 298.72042 * 4 3 2 28 28 H 1.09003 * 109.37543 * 178.87582 * 4 3 2 29 29 H 1.08998 * 109.40076 * 64.60601 * 6 5 4 30 30 H 1.08999 * 109.39718 * 304.85415 * 6 5 4 31 31 H 1.08997 * 109.54858 * 60.27279 * 7 6 5 32 32 H 1.09006 * 109.54444 * 180.55158 * 7 6 5 33 33 H 1.09004 * 109.56701 * 178.09386 * 8 7 6 34 34 H 1.09000 * 109.57304 * 298.33516 * 8 7 6 35 35 H 0.96994 * 120.00191 * 179.97438 * 14 13 11 36 36 H 1.09003 * 109.42096 * 63.13851 * 21 2 1 37 37 H 1.09003 * 109.42175 * 303.31886 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3727 0.0000 4 6 3.5214 1.3219 0.0943 5 7 4.0648 0.5613 -1.0418 6 6 5.5341 0.5534 -0.9812 7 6 6.1021 -0.1352 -2.2228 8 6 5.5766 -1.5728 -2.2805 9 6 4.0472 -1.5398 -2.3106 10 1 3.7129 -1.0213 -3.2093 11 6 3.5150 -2.9497 -2.3176 12 1 2.8710 -3.2877 -1.5192 13 6 3.8502 -3.8081 -3.3432 14 7 3.3861 -5.0386 -3.3490 15 14 4.9635 -3.2232 -4.7244 16 1 6.3792 -3.4943 -4.3674 17 1 4.6214 -3.9460 -5.9757 18 1 4.7750 -1.7643 -4.9280 19 6 3.5243 -0.8035 -1.0735 20 1 3.8317 -1.3378 -0.1746 21 6 1.9953 -0.7534 -1.1451 22 1 -0.3633 0.5740 -0.8525 23 1 -0.3632 -1.0252 -0.0707 24 1 -0.3634 0.4512 0.9233 25 1 1.5956 1.9169 0.8554 26 1 1.7042 1.8752 -0.9222 27 1 3.8109 0.8373 1.0267 28 1 3.9189 2.3366 0.0745 29 1 5.8568 0.0159 -0.0896 30 1 5.9002 1.5791 -0.9367 31 1 5.7866 0.4046 -3.1157 32 1 7.1907 -0.1467 -2.1676 33 1 5.9490 -2.0618 -3.1807 34 1 5.9146 -2.1207 -1.4010 35 1 3.6216 -5.6424 -4.0707 36 1 1.6915 -0.2648 -2.0710 37 1 1.5980 -1.7683 -1.1247 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259563984.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:06 Heat of formation + Delta-G solvation = 10.022193 kcal Electronic energy + Delta-G solvation = -16687.508536 eV Core-core repulsion = 14271.404064 eV Total energy + Delta-G solvation = -2416.104471 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.42359 -36.34197 -33.84745 -31.96792 -31.02794 -29.07217 -26.71599 -24.63029 -23.24295 -22.83279 -21.03860 -19.41829 -18.88082 -16.75037 -15.71597 -15.09682 -14.67485 -14.51794 -14.15063 -13.92747 -13.39599 -13.28625 -12.75076 -12.48941 -12.31594 -11.80545 -11.65521 -11.38247 -11.11509 -10.99284 -10.87456 -10.52080 -10.41006 -10.04869 -9.81188 -9.68167 -9.02901 -8.85954 -8.49378 -8.01449 -7.76190 -6.05342 -4.04197 3.29227 3.40630 3.43663 4.32654 4.37733 4.43778 5.24838 5.25506 5.32993 5.46378 5.51948 5.58377 5.68192 5.75605 5.79528 5.89528 6.04169 6.07717 6.09283 6.13720 6.17963 6.27171 6.35508 6.46655 6.66160 6.69155 6.84844 6.86354 7.13214 7.38017 7.42348 7.47333 7.65617 7.67814 7.91110 8.53774 8.97964 9.57400 11.07474 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.028573 B = 0.011157 C = 0.008546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.694449 B = 2508.993444 C = 3275.772022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.549 5.549 3 C 0.057 3.943 4 C 0.057 3.943 5 N -0.539 5.539 6 C 0.063 3.937 7 C -0.121 4.121 8 C -0.122 4.122 9 C 0.025 3.975 10 H 0.033 0.967 11 C -0.512 4.512 12 H 0.076 0.924 13 C 0.071 3.929 14 N -0.901 5.901 15 Si 0.885 3.115 16 H -0.280 1.280 17 H -0.299 1.299 18 H -0.264 1.264 19 C 0.110 3.890 20 H 0.042 0.958 21 C 0.070 3.930 22 H 0.022 0.978 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.036 0.964 28 H 0.070 0.930 29 H 0.028 0.972 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.263 0.737 36 H 0.035 0.965 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.150 12.113 4.999 13.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.273 5.273 3 C -0.071 4.071 4 C -0.072 4.072 5 N -0.264 5.264 6 C -0.065 4.065 7 C -0.158 4.158 8 C -0.160 4.160 9 C 0.005 3.995 10 H 0.052 0.948 11 C -0.550 4.550 12 H 0.094 0.906 13 C -0.130 4.130 14 N -0.539 5.539 15 Si 0.716 3.284 16 H -0.207 1.207 17 H -0.227 1.227 18 H -0.189 1.189 19 C 0.002 3.998 20 H 0.060 0.940 21 C -0.057 4.057 22 H 0.040 0.960 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.143 11.940 4.903 12.908 hybrid contribution 0.634 0.141 -0.784 1.018 sum 0.777 12.081 4.118 12.787 Atomic orbital electron populations 1.22305 0.87910 1.01960 0.99927 1.62320 1.07340 1.13315 1.44350 1.22121 0.94759 0.90076 1.00152 1.22083 0.94343 0.98002 0.92756 1.62401 1.06059 1.16466 1.41474 1.21974 0.87814 0.99297 0.97435 1.21659 0.98489 0.97866 0.97833 1.22010 0.99313 0.93836 1.00810 1.19197 0.90881 0.96013 0.93418 0.94849 1.21023 1.30456 0.94014 1.09482 0.90573 1.24972 0.95725 0.94652 0.97660 1.69894 1.45313 1.05591 1.33129 0.86871 0.80793 0.79277 0.81472 1.20729 1.22667 1.18903 1.21587 0.92929 0.86051 0.99244 0.93975 1.22243 0.94786 0.98813 0.89851 0.95986 0.91283 0.92049 0.91131 0.94405 0.94581 0.91182 0.95326 0.91908 0.91854 0.92709 0.93425 0.92411 0.92719 0.94700 0.88841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.63 60.07 0.58 0.96 16 2 N -0.55 -9.29 4.98 -242.81 -1.21 -10.50 16 3 C 0.06 0.85 5.62 -3.79 -0.02 0.83 16 4 C 0.06 0.87 5.53 -3.74 -0.02 0.84 16 5 N -0.54 -9.77 4.71 -226.29 -1.07 -10.83 16 6 C 0.06 1.04 5.37 -3.78 -0.02 1.02 16 7 C -0.12 -2.16 6.10 -26.69 -0.16 -2.32 16 8 C -0.12 -2.66 4.74 -26.64 -0.13 -2.79 16 9 C 0.02 0.58 1.33 -91.68 -0.12 0.46 16 10 H 0.03 0.84 7.19 -51.92 -0.37 0.46 16 11 C -0.51 -14.05 8.41 -34.44 -0.29 -14.34 16 12 H 0.08 2.25 7.02 -52.49 -0.37 1.88 16 13 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 14 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 15 Si 0.89 22.06 24.35 -169.99 -4.14 17.92 16 16 H -0.28 -6.82 6.88 56.52 0.39 -6.43 16 17 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 18 H -0.26 -6.37 6.53 56.52 0.37 -6.00 16 19 C 0.11 2.29 1.83 -67.59 -0.12 2.17 16 20 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 21 C 0.07 1.40 4.54 -3.78 -0.02 1.39 16 22 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 23 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.89 8.08 -51.93 -0.42 0.47 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 1.10 3.33 -51.93 -0.17 0.92 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.09 2.03 6.66 -51.93 -0.35 1.69 16 LS Contribution 273.38 15.07 4.12 4.12 Total: -1.00 -29.44 273.38 -8.29 -37.74 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -6.35 Total: -2.03 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -0.42 Total: -9.84 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -1.50 Total: -47.90 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.14 Total: 17.92 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.44 -8.29 -37.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259563984.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.759 kcal (2) G-P(sol) polarization free energy of solvation -29.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds