Wall clock time and date at job start Mon Mar 30 2020 03:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47034 * 110.99722 * 2 1 4 4 C 1.52924 * 109.05068 * 176.26104 * 3 2 1 5 5 N 1.47119 * 109.76089 * 58.81494 * 4 3 2 6 6 C 1.47057 * 109.88278 * 177.89789 * 5 4 3 7 7 C 1.52917 * 109.88431 * 184.73338 * 6 5 4 8 8 C 1.53172 * 109.01115 * 300.41210 * 7 6 5 9 9 C 1.53004 * 108.87305 * 58.27570 * 8 7 6 10 10 H 1.09008 * 109.44771 * 62.07639 * 9 8 7 11 11 C 1.50702 * 109.44819 * 182.01140 * 9 8 7 12 12 H 1.07999 * 119.99704 * 119.99734 * 11 9 8 13 13 C 1.37875 * 120.00193 * 300.00389 * 11 9 8 14 14 N 1.31516 * 120.00048 * 179.97438 * 13 11 9 15 15 Si 1.86799 * 120.00028 * 359.97438 * 13 11 9 16 16 H 1.48494 * 109.47123 * 89.99834 * 15 13 11 17 17 H 1.48503 * 109.47097 * 210.00204 * 15 13 11 18 18 H 1.48506 * 109.46791 * 329.99880 * 15 13 11 19 19 C 1.46830 * 111.17347 * 301.59626 * 5 4 3 20 20 H 1.08995 * 109.51563 * 297.06077 * 19 5 4 21 21 C 1.46832 * 111.00239 * 236.65713 * 2 1 3 22 22 H 1.09004 * 109.47030 * 56.04894 * 1 2 3 23 23 H 1.08999 * 109.46628 * 176.05257 * 1 2 3 24 24 H 1.09004 * 109.47288 * 296.04495 * 1 2 3 25 25 H 1.09000 * 109.54208 * 56.38594 * 3 2 1 26 26 H 1.09000 * 109.54070 * 296.12885 * 3 2 1 27 27 H 1.08996 * 109.42238 * 298.72042 * 4 3 2 28 28 H 1.09003 * 109.37543 * 178.87582 * 4 3 2 29 29 H 1.08998 * 109.40076 * 64.60601 * 6 5 4 30 30 H 1.08999 * 109.39718 * 304.85415 * 6 5 4 31 31 H 1.08997 * 109.54858 * 60.27279 * 7 6 5 32 32 H 1.09006 * 109.54444 * 180.55158 * 7 6 5 33 33 H 1.09004 * 109.56701 * 178.09386 * 8 7 6 34 34 H 1.09000 * 109.57304 * 298.33516 * 8 7 6 35 35 H 0.96994 * 120.00191 * 179.97438 * 14 13 11 36 36 H 1.09003 * 109.42096 * 63.13851 * 21 2 1 37 37 H 1.09003 * 109.42175 * 303.31886 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3727 0.0000 4 6 3.5214 1.3219 0.0943 5 7 4.0648 0.5613 -1.0418 6 6 5.5341 0.5534 -0.9812 7 6 6.1021 -0.1352 -2.2228 8 6 5.5766 -1.5728 -2.2805 9 6 4.0472 -1.5398 -2.3106 10 1 3.7129 -1.0213 -3.2093 11 6 3.5150 -2.9497 -2.3176 12 1 2.8710 -3.2877 -1.5192 13 6 3.8502 -3.8081 -3.3432 14 7 3.3861 -5.0386 -3.3490 15 14 4.9635 -3.2232 -4.7244 16 1 6.3792 -3.4943 -4.3674 17 1 4.6214 -3.9460 -5.9757 18 1 4.7750 -1.7643 -4.9280 19 6 3.5243 -0.8035 -1.0735 20 1 3.8317 -1.3378 -0.1746 21 6 1.9953 -0.7534 -1.1451 22 1 -0.3633 0.5740 -0.8525 23 1 -0.3632 -1.0252 -0.0707 24 1 -0.3634 0.4512 0.9233 25 1 1.5956 1.9169 0.8554 26 1 1.7042 1.8752 -0.9222 27 1 3.8109 0.8373 1.0267 28 1 3.9189 2.3366 0.0745 29 1 5.8568 0.0159 -0.0896 30 1 5.9002 1.5791 -0.9367 31 1 5.7866 0.4046 -3.1157 32 1 7.1907 -0.1467 -2.1676 33 1 5.9490 -2.0618 -3.1807 34 1 5.9146 -2.1207 -1.4010 35 1 3.6216 -5.6424 -4.0707 36 1 1.6915 -0.2648 -2.0710 37 1 1.5980 -1.7683 -1.1247 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259563984.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:06 Heat of formation + Delta-G solvation = -12.340514 kcal Electronic energy + Delta-G solvation = -16688.478255 eV Core-core repulsion = 14271.404064 eV Total energy + Delta-G solvation = -2417.074191 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.90208 -37.77779 -35.58324 -33.80423 -32.64809 -30.51362 -28.20853 -26.44186 -24.67194 -24.24044 -22.68027 -20.84184 -20.53857 -18.84765 -17.24209 -16.66659 -16.14861 -15.97426 -15.66857 -15.27069 -14.98780 -14.92046 -14.70261 -13.99559 -13.76563 -13.16825 -13.05569 -12.98533 -12.67875 -12.50305 -12.43803 -12.15011 -11.90853 -11.77758 -11.65563 -11.40225 -10.90993 -10.74604 -10.54545 -9.36100 -9.18388 -8.28321 -6.30901 1.29227 1.35589 1.46263 2.33058 2.99508 3.00572 3.10847 3.93679 3.97732 4.08061 4.15661 4.23857 4.39144 4.42205 4.49426 4.58830 4.61794 4.70369 4.76070 4.80982 4.86997 4.90660 4.97777 4.98974 5.09723 5.10715 5.17272 5.24131 5.41191 5.63260 5.70937 6.01895 6.07535 6.24604 6.29948 6.38707 6.75248 7.33795 8.88090 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.028573 B = 0.011157 C = 0.008546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.694449 B = 2508.993444 C = 3275.772022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.560 5.560 3 C 0.056 3.944 4 C 0.055 3.945 5 N -0.545 5.545 6 C 0.061 3.939 7 C -0.115 4.115 8 C -0.124 4.124 9 C 0.026 3.974 10 H 0.021 0.979 11 C -0.510 4.510 12 H 0.037 0.963 13 C 0.014 3.986 14 N -0.949 5.949 15 Si 0.947 3.053 16 H -0.267 1.267 17 H -0.300 1.300 18 H -0.250 1.250 19 C 0.120 3.880 20 H 0.017 0.983 21 C 0.081 3.919 22 H 0.028 0.972 23 H 0.058 0.942 24 H 0.090 0.910 25 H 0.103 0.897 26 H 0.036 0.964 27 H 0.032 0.968 28 H 0.105 0.895 29 H 0.027 0.973 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.036 0.964 34 H 0.048 0.952 35 H 0.264 0.736 36 H 0.023 0.977 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.381 15.287 5.315 16.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.285 5.285 3 C -0.071 4.071 4 C -0.073 4.073 5 N -0.271 5.271 6 C -0.067 4.067 7 C -0.153 4.153 8 C -0.162 4.162 9 C 0.007 3.993 10 H 0.039 0.961 11 C -0.548 4.548 12 H 0.055 0.945 13 C -0.183 4.183 14 N -0.590 5.590 15 Si 0.775 3.225 16 H -0.193 1.193 17 H -0.228 1.228 18 H -0.174 1.174 19 C 0.011 3.989 20 H 0.035 0.965 21 C -0.047 4.047 22 H 0.046 0.954 23 H 0.076 0.924 24 H 0.108 0.892 25 H 0.121 0.879 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.123 0.877 29 H 0.046 0.954 30 H 0.118 0.882 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.042 0.958 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.375 15.147 5.241 16.087 hybrid contribution 0.163 -0.850 -0.779 1.164 sum 1.538 14.297 4.463 15.056 Atomic orbital electron populations 1.22375 0.86227 1.01830 1.01651 1.62309 1.09030 1.14767 1.42381 1.22265 0.94681 0.88693 1.01501 1.22248 0.94618 0.99095 0.91314 1.62401 1.07290 1.14162 1.43230 1.22093 0.86652 1.01315 0.96590 1.21639 1.00351 0.94633 0.98646 1.21931 0.97541 0.96912 0.99804 1.19094 0.92515 0.93470 0.94265 0.96091 1.21279 1.29277 0.96234 1.08037 0.94501 1.25791 0.97439 0.94638 1.00385 1.70041 1.47430 1.07094 1.34386 0.85865 0.79281 0.79398 0.78002 1.19337 1.22822 1.17395 1.21261 0.93401 0.87657 0.96565 0.96483 1.21925 0.94501 0.97488 0.90782 0.95350 0.92356 0.89187 0.87892 0.94526 0.94969 0.87723 0.95431 0.88153 0.91802 0.89654 0.94533 0.93337 0.92659 0.95825 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 9.63 127.69 1.23 1.96 16 2 N -0.56 -18.43 4.98 -922.10 -4.60 -23.03 16 3 C 0.06 1.50 5.62 86.25 0.48 1.98 16 4 C 0.06 1.49 5.53 86.24 0.48 1.96 16 5 N -0.55 -18.47 4.71 -869.86 -4.10 -22.57 16 6 C 0.06 1.80 5.37 86.25 0.46 2.26 16 7 C -0.12 -3.74 6.10 30.62 0.19 -3.55 16 8 C -0.12 -5.29 4.74 30.65 0.15 -5.14 16 9 C 0.03 1.25 1.33 -11.48 -0.02 1.24 16 10 H 0.02 1.05 7.19 -2.38 -0.02 1.04 16 11 C -0.51 -29.32 8.41 25.60 0.22 -29.10 16 12 H 0.04 2.35 7.02 -2.91 -0.02 2.33 16 13 C 0.01 0.84 5.45 84.65 0.46 1.31 16 14 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 15 Si 0.95 46.00 24.35 68.60 1.67 47.67 16 16 H -0.27 -12.34 6.88 99.48 0.68 -11.66 16 17 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 18 H -0.25 -11.45 6.53 99.48 0.65 -10.80 16 19 C 0.12 5.03 1.83 45.04 0.08 5.12 16 20 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 21 C 0.08 3.33 4.54 86.37 0.39 3.72 16 22 H 0.03 0.72 8.14 -2.39 -0.02 0.71 16 23 H 0.06 1.67 8.07 -2.39 -0.02 1.65 16 24 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.10 2.16 8.10 -2.39 -0.02 2.14 16 29 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.10 2.28 8.08 -2.39 -0.02 2.26 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.04 1.62 3.33 -2.38 -0.01 1.61 16 34 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 36 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 2.76 6.66 -2.39 -0.02 2.74 16 Total: -1.00 -66.22 273.38 -1.66 -67.88 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 0.94 Total: 7.96 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: 4.12 Total: -18.25 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -8.39 Total: -105.26 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.67 Total: 47.67 kcal Total: -66.22 -1.66 -67.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259563984.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.542 kcal (2) G-P(sol) polarization free energy of solvation -66.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds