Wall clock time and date at job start Mon Mar 30 2020 03:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.44133 * 110.99523 * 2 1 4 4 C 1.55343 * 110.51277 * 140.70643 * 3 2 1 5 5 C 1.53038 * 109.65899 * 39.29137 * 4 3 2 6 6 H 1.09001 * 107.17780 * 281.26197 * 5 4 3 7 7 C 1.54394 * 108.84028 * 165.48866 * 5 4 3 8 8 H 1.09005 * 110.44139 * 113.91212 * 7 5 4 9 9 C 1.50697 * 110.54750 * 351.44272 * 7 5 4 10 10 H 1.07996 * 120.00029 * 280.07149 * 9 7 5 11 11 C 1.37875 * 120.00126 * 100.07293 * 9 7 5 12 12 N 1.31509 * 120.00344 * 179.97438 * 11 9 7 13 13 Si 1.86804 * 119.99896 * 0.02562 * 11 9 7 14 14 H 1.48500 * 109.47072 * 90.00055 * 13 11 9 15 15 H 1.48498 * 109.47072 * 210.00028 * 13 11 9 16 16 H 1.48496 * 109.47093 * 330.00103 * 13 11 9 17 17 C 1.54766 * 104.44707 * 232.64762 * 7 5 4 18 18 C 1.55039 * 102.88156 * 337.32074 * 17 7 5 19 19 N 1.43460 * 117.36769 * 42.34248 * 5 4 3 20 20 C 1.47961 * 112.20656 * 265.79121 * 19 5 4 21 21 C 1.46606 * 111.00018 * 237.49954 * 2 1 3 22 22 H 1.09006 * 109.47422 * 178.54690 * 1 2 3 23 23 H 1.09007 * 109.47431 * 58.54980 * 1 2 3 24 24 H 1.08997 * 109.47650 * 298.55055 * 1 2 3 25 25 H 1.08997 * 109.26853 * 260.96768 * 3 2 1 26 26 H 1.08993 * 109.26906 * 20.44449 * 3 2 1 27 27 H 1.09002 * 109.44192 * 279.23869 * 4 3 2 28 28 H 1.08996 * 109.41104 * 159.32860 * 4 3 2 29 29 H 0.97002 * 120.00481 * 179.97438 * 12 11 9 30 30 H 1.08995 * 110.73295 * 218.96914 * 17 7 5 31 31 H 1.08997 * 110.72892 * 95.66362 * 17 7 5 32 32 H 1.09008 * 110.68067 * 277.43483 * 18 17 7 33 33 H 1.09005 * 110.68585 * 154.25777 * 18 17 7 34 34 H 1.08989 * 109.55014 * 314.28241 * 20 19 5 35 35 H 1.08998 * 109.62960 * 194.03668 * 20 19 5 36 36 H 1.08996 * 108.66335 * 330.46325 * 21 2 1 37 37 H 1.08995 * 108.66693 * 88.47936 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9854 1.3456 0.0000 4 6 3.2316 1.4504 0.9214 5 6 4.0924 0.1944 0.7680 6 1 3.6204 -0.5931 1.3556 7 6 5.4804 0.4622 1.3889 8 1 5.6332 -0.1673 2.2656 9 6 5.6240 1.9169 1.7556 10 1 5.8645 2.6443 0.9945 11 6 5.4483 2.3190 3.0626 12 7 5.5742 3.5883 3.3827 13 14 5.0330 1.0605 4.3792 14 1 6.2878 0.5314 4.9716 15 1 4.2179 1.7047 5.4402 16 1 4.2634 -0.0551 3.7724 17 6 6.4825 0.0850 0.2715 18 6 5.6608 -0.8839 -0.6171 19 7 4.2877 -0.3131 -0.5595 20 6 3.3067 -1.3651 -0.9060 21 6 1.9943 -0.7354 -1.1543 22 1 -0.3634 -1.0274 -0.0261 23 1 -0.3634 0.5362 -0.8767 24 1 -0.3634 0.4911 0.9026 25 1 2.2650 1.6236 -1.0162 26 1 1.2142 2.0269 0.3594 27 1 2.9093 1.5448 1.9584 28 1 3.8160 2.3270 0.6420 29 1 5.4502 3.8712 4.3022 30 1 7.3540 -0.4194 0.6889 31 1 6.7804 0.9681 -0.2938 32 1 5.6763 -1.8923 -0.2035 33 1 6.0367 -0.8804 -1.6403 34 1 3.2220 -2.0712 -0.0801 35 1 3.6346 -1.8906 -1.8029 36 1 1.2806 -1.5127 -1.4270 37 1 2.0938 -0.0451 -1.9919 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259838016.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:30 Heat of formation + Delta-G solvation = 22.091960 kcal Electronic energy + Delta-G solvation = -16807.780340 eV Core-core repulsion = 14392.199254 eV Total energy + Delta-G solvation = -2415.581087 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.46084 -36.73397 -33.55791 -31.70093 -30.80054 -28.64019 -27.04308 -24.39799 -24.04228 -22.24364 -20.36684 -19.79012 -18.40464 -16.66447 -15.82809 -15.44005 -14.45419 -14.40432 -14.18359 -13.52944 -13.49620 -12.86898 -12.75024 -12.31438 -12.08137 -11.92997 -11.41124 -11.15915 -10.84422 -10.77898 -10.54349 -10.46990 -10.38786 -10.04837 -9.67749 -9.46625 -9.24928 -8.81230 -8.46143 -7.91416 -7.52378 -6.02833 -3.96308 3.31446 3.40900 3.45936 4.32411 4.47124 4.58257 5.21785 5.37250 5.39843 5.49599 5.60863 5.68286 5.72738 5.88391 5.91700 5.98615 6.03052 6.09868 6.17596 6.25980 6.30183 6.36879 6.41713 6.76260 6.83783 6.91551 7.04925 7.21208 7.33704 7.48164 7.55860 7.69741 7.79507 7.90253 8.11045 8.60748 9.02122 9.60818 11.10086 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.026961 B = 0.011710 C = 0.009546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.283711 B = 2390.519852 C = 2932.461605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.538 5.538 3 C 0.051 3.949 4 C -0.067 4.067 5 C 0.089 3.911 6 H 0.016 0.984 7 C 0.001 3.999 8 H 0.033 0.967 9 C -0.489 4.489 10 H 0.076 0.924 11 C 0.071 3.929 12 N -0.901 5.901 13 Si 0.870 3.130 14 H -0.280 1.280 15 H -0.290 1.290 16 H -0.263 1.263 17 C -0.115 4.115 18 C 0.037 3.963 19 N -0.513 5.513 20 C 0.054 3.946 21 C 0.062 3.938 22 H 0.060 0.940 23 H 0.019 0.981 24 H 0.065 0.935 25 H 0.041 0.959 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.093 0.907 29 H 0.262 0.738 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.031 0.969 33 H 0.067 0.933 34 H 0.035 0.965 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.621 -8.698 -7.378 13.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.262 5.262 3 C -0.077 4.077 4 C -0.105 4.105 5 C -0.021 4.021 6 H 0.034 0.966 7 C -0.019 4.019 8 H 0.051 0.949 9 C -0.527 4.527 10 H 0.094 0.906 11 C -0.130 4.130 12 N -0.539 5.539 13 Si 0.697 3.303 14 H -0.206 1.206 15 H -0.216 1.216 16 H -0.188 1.188 17 C -0.153 4.153 18 C -0.090 4.090 19 N -0.238 5.238 20 C -0.075 4.075 21 C -0.066 4.066 22 H 0.079 0.921 23 H 0.038 0.962 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.564 -8.381 -7.136 12.816 hybrid contribution -0.552 -0.952 0.751 1.332 sum -7.115 -9.333 -6.385 13.360 Atomic orbital electron populations 1.22430 0.88139 1.01071 1.00250 1.61145 1.06522 1.16320 1.42243 1.22404 0.98001 0.87279 1.00044 1.21920 0.92238 0.98988 0.97383 1.21510 0.98300 0.95940 0.86351 0.96620 1.20342 0.90184 0.97825 0.93516 0.94914 1.20835 1.46638 0.90806 0.94438 0.90593 1.25021 0.94865 0.94822 0.98284 1.69891 1.50264 1.14934 1.18797 0.86965 0.78819 0.82519 0.81954 1.20608 1.21590 1.18810 1.22622 0.97422 0.97862 0.97407 1.23251 0.89928 0.96287 0.99563 1.62947 1.01401 1.29864 1.29545 1.21474 0.92648 0.93427 0.99907 1.21121 0.96037 0.97692 0.91720 0.92141 0.96230 0.91615 0.94080 0.93162 0.92729 0.88848 0.92794 0.93011 0.91172 0.95057 0.91475 0.94657 0.91149 0.92403 0.94016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.16 60.06 0.55 0.94 16 2 N -0.54 -9.02 4.21 -247.17 -1.04 -10.06 16 3 C 0.05 0.93 5.52 -4.06 -0.02 0.91 16 4 C -0.07 -1.47 4.92 -25.47 -0.13 -1.60 16 5 C 0.09 1.93 2.11 -68.79 -0.15 1.79 16 6 H 0.02 0.37 7.22 -51.93 -0.37 -0.01 16 7 C 0.00 0.02 2.57 -90.11 -0.23 -0.21 16 8 H 0.03 0.80 5.34 -51.93 -0.28 0.52 16 9 C -0.49 -13.25 6.08 -34.44 -0.21 -13.46 16 10 H 0.08 2.25 7.82 -52.49 -0.41 1.84 16 11 C 0.07 2.00 5.33 -17.82 -0.09 1.91 16 12 N -0.90 -26.95 13.96 55.43 0.77 -26.17 16 13 Si 0.87 21.71 26.85 -169.99 -4.56 17.15 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.26 -6.47 6.73 56.52 0.38 -6.09 16 17 C -0.11 -2.34 6.62 -24.72 -0.16 -2.51 16 18 C 0.04 0.66 6.50 -1.69 -0.01 0.65 16 19 N -0.51 -9.78 4.80 -227.67 -1.09 -10.87 16 20 C 0.05 0.86 5.18 -5.82 -0.03 0.83 16 21 C 0.06 0.94 5.13 -6.56 -0.03 0.91 16 22 H 0.06 0.71 7.93 -51.93 -0.41 0.30 16 23 H 0.02 0.24 8.14 -51.92 -0.42 -0.18 16 24 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 25 H 0.04 0.75 7.05 -51.93 -0.37 0.39 16 26 H 0.05 0.86 7.57 -51.93 -0.39 0.46 16 27 H 0.05 1.29 7.87 -51.93 -0.41 0.88 16 28 H 0.09 2.29 6.23 -51.93 -0.32 1.96 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.49 7.81 -51.93 -0.41 1.08 16 32 H 0.03 0.52 7.96 -51.92 -0.41 0.11 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.04 0.60 7.65 -51.94 -0.40 0.20 16 35 H 0.07 0.96 8.02 -51.93 -0.42 0.54 16 36 H 0.06 0.74 7.59 -51.93 -0.39 0.34 16 37 H 0.04 0.64 7.17 -51.93 -0.37 0.27 16 LS Contribution 273.92 15.07 4.13 4.13 Total: -1.00 -29.13 273.92 -8.52 -37.65 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -6.21 Total: -2.00 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -0.52 Total: -9.83 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: -1.36 Total: -47.10 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.56 Total: 17.15 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.13 -8.52 -37.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259838016.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.744 kcal (2) G-P(sol) polarization free energy of solvation -29.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds