Wall clock time and date at job start Mon Mar 30 2020 03:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.44133 * 110.99523 * 2 1 4 4 C 1.55343 * 110.51277 * 140.70643 * 3 2 1 5 5 C 1.53038 * 109.65899 * 39.29137 * 4 3 2 6 6 H 1.09001 * 107.17780 * 281.26197 * 5 4 3 7 7 C 1.54394 * 108.84028 * 165.48866 * 5 4 3 8 8 H 1.09005 * 110.44139 * 113.91212 * 7 5 4 9 9 C 1.50697 * 110.54750 * 351.44272 * 7 5 4 10 10 H 1.07996 * 120.00029 * 280.07149 * 9 7 5 11 11 C 1.37875 * 120.00126 * 100.07293 * 9 7 5 12 12 N 1.31509 * 120.00344 * 179.97438 * 11 9 7 13 13 Si 1.86804 * 119.99896 * 0.02562 * 11 9 7 14 14 H 1.48500 * 109.47072 * 90.00055 * 13 11 9 15 15 H 1.48498 * 109.47072 * 210.00028 * 13 11 9 16 16 H 1.48496 * 109.47093 * 330.00103 * 13 11 9 17 17 C 1.54766 * 104.44707 * 232.64762 * 7 5 4 18 18 C 1.55039 * 102.88156 * 337.32074 * 17 7 5 19 19 N 1.43460 * 117.36769 * 42.34248 * 5 4 3 20 20 C 1.47961 * 112.20656 * 265.79121 * 19 5 4 21 21 C 1.46606 * 111.00018 * 237.49954 * 2 1 3 22 22 H 1.09006 * 109.47422 * 178.54690 * 1 2 3 23 23 H 1.09007 * 109.47431 * 58.54980 * 1 2 3 24 24 H 1.08997 * 109.47650 * 298.55055 * 1 2 3 25 25 H 1.08997 * 109.26853 * 260.96768 * 3 2 1 26 26 H 1.08993 * 109.26906 * 20.44449 * 3 2 1 27 27 H 1.09002 * 109.44192 * 279.23869 * 4 3 2 28 28 H 1.08996 * 109.41104 * 159.32860 * 4 3 2 29 29 H 0.97002 * 120.00481 * 179.97438 * 12 11 9 30 30 H 1.08995 * 110.73295 * 218.96914 * 17 7 5 31 31 H 1.08997 * 110.72892 * 95.66362 * 17 7 5 32 32 H 1.09008 * 110.68067 * 277.43483 * 18 17 7 33 33 H 1.09005 * 110.68585 * 154.25777 * 18 17 7 34 34 H 1.08989 * 109.55014 * 314.28241 * 20 19 5 35 35 H 1.08998 * 109.62960 * 194.03668 * 20 19 5 36 36 H 1.08996 * 108.66335 * 330.46325 * 21 2 1 37 37 H 1.08995 * 108.66693 * 88.47936 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9854 1.3456 0.0000 4 6 3.2316 1.4504 0.9214 5 6 4.0924 0.1944 0.7680 6 1 3.6204 -0.5931 1.3556 7 6 5.4804 0.4622 1.3889 8 1 5.6332 -0.1673 2.2656 9 6 5.6240 1.9169 1.7556 10 1 5.8645 2.6443 0.9945 11 6 5.4483 2.3190 3.0626 12 7 5.5742 3.5883 3.3827 13 14 5.0330 1.0605 4.3792 14 1 6.2878 0.5314 4.9716 15 1 4.2179 1.7047 5.4402 16 1 4.2634 -0.0551 3.7724 17 6 6.4825 0.0850 0.2715 18 6 5.6608 -0.8839 -0.6171 19 7 4.2877 -0.3131 -0.5595 20 6 3.3067 -1.3651 -0.9060 21 6 1.9943 -0.7354 -1.1543 22 1 -0.3634 -1.0274 -0.0261 23 1 -0.3634 0.5362 -0.8767 24 1 -0.3634 0.4911 0.9026 25 1 2.2650 1.6236 -1.0162 26 1 1.2142 2.0269 0.3594 27 1 2.9093 1.5448 1.9584 28 1 3.8160 2.3270 0.6420 29 1 5.4502 3.8712 4.3022 30 1 7.3540 -0.4194 0.6889 31 1 6.7804 0.9681 -0.2938 32 1 5.6763 -1.8923 -0.2035 33 1 6.0367 -0.8804 -1.6403 34 1 3.2220 -2.0712 -0.0801 35 1 3.6346 -1.8906 -1.8029 36 1 1.2806 -1.5127 -1.4270 37 1 2.0938 -0.0451 -1.9919 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259838016.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:29 Heat of formation + Delta-G solvation = 1.120550 kcal Electronic energy + Delta-G solvation = -16808.689729 eV Core-core repulsion = 14392.199254 eV Total energy + Delta-G solvation = -2416.490475 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.96414 -38.14035 -35.35189 -33.56579 -32.33446 -30.26826 -28.42635 -26.25255 -25.42528 -23.77806 -21.78862 -21.34256 -20.26459 -18.66004 -17.25810 -16.79799 -16.21232 -15.95116 -15.69965 -15.04807 -14.97843 -14.64835 -14.21740 -13.88487 -13.79538 -13.22016 -12.98983 -12.73467 -12.46181 -12.25468 -12.20150 -12.09236 -11.92119 -11.71322 -11.49058 -11.29521 -11.01342 -10.76803 -10.60425 -9.20036 -9.02718 -8.23212 -6.18602 1.30112 1.34802 1.44509 2.36465 3.06691 3.14674 3.17731 4.01419 4.10159 4.21315 4.32877 4.38140 4.45256 4.46171 4.50386 4.63496 4.69657 4.71728 4.78755 4.85413 4.95461 4.99924 5.02050 5.13250 5.17384 5.23127 5.32500 5.47523 5.57839 5.68161 5.87963 6.21939 6.31000 6.35159 6.40377 6.54947 6.81335 7.40300 8.93648 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.026961 B = 0.011710 C = 0.009546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.283711 B = 2390.519852 C = 2932.461605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.559 5.559 3 C 0.066 3.934 4 C -0.065 4.065 5 C 0.106 3.894 6 H 0.002 0.998 7 C -0.012 4.012 8 H 0.027 0.973 9 C -0.476 4.476 10 H 0.035 0.965 11 C 0.019 3.981 12 N -0.948 5.948 13 Si 0.927 3.073 14 H -0.271 1.271 15 H -0.289 1.289 16 H -0.257 1.257 17 C -0.115 4.115 18 C 0.046 3.954 19 N -0.526 5.526 20 C 0.054 3.946 21 C 0.060 3.940 22 H 0.081 0.919 23 H 0.032 0.968 24 H 0.062 0.938 25 H 0.040 0.960 26 H 0.057 0.943 27 H 0.029 0.971 28 H 0.056 0.944 29 H 0.263 0.737 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.094 0.906 34 H 0.030 0.970 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.738 -11.495 -8.594 16.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.284 5.284 3 C -0.063 4.063 4 C -0.104 4.104 5 C -0.004 4.004 6 H 0.020 0.980 7 C -0.032 4.032 8 H 0.045 0.955 9 C -0.514 4.514 10 H 0.054 0.946 11 C -0.177 4.177 12 N -0.589 5.589 13 Si 0.753 3.247 14 H -0.196 1.196 15 H -0.215 1.215 16 H -0.181 1.181 17 C -0.153 4.153 18 C -0.081 4.081 19 N -0.251 5.251 20 C -0.074 4.074 21 C -0.067 4.067 22 H 0.100 0.900 23 H 0.051 0.949 24 H 0.081 0.919 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.048 0.952 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.685 -11.205 -8.374 15.961 hybrid contribution -0.192 -0.060 1.044 1.063 sum -7.877 -11.266 -7.330 15.579 Atomic orbital electron populations 1.22470 0.85823 1.02643 1.00740 1.61031 1.08729 1.14999 1.43600 1.22119 0.96421 0.89036 0.98738 1.21716 0.94064 0.97858 0.96793 1.21181 0.96286 0.95134 0.87806 0.97965 1.20419 0.92908 0.95092 0.94757 0.95492 1.20921 1.44987 0.92137 0.93368 0.94637 1.25693 0.95272 0.96319 1.00439 1.70023 1.52665 1.16922 1.19265 0.86029 0.78897 0.80372 0.79378 1.19619 1.21531 1.18097 1.22555 0.97674 0.98333 0.96737 1.23276 0.88383 0.95945 1.00491 1.62946 1.03032 1.31830 1.27313 1.21641 0.92292 0.92509 1.00961 1.21186 0.96391 0.98299 0.90864 0.90048 0.94918 0.91923 0.94171 0.92406 0.95236 0.92521 0.92834 0.91498 0.92843 0.93287 0.88759 0.95187 0.87942 0.89207 0.94171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 9.16 127.69 1.17 1.89 16 2 N -0.56 -17.34 4.21 -935.89 -3.94 -21.28 16 3 C 0.07 2.35 5.52 87.62 0.48 2.84 16 4 C -0.07 -2.95 4.92 31.41 0.15 -2.79 16 5 C 0.11 4.57 2.11 46.04 0.10 4.67 16 6 H 0.00 0.10 7.22 -2.39 -0.02 0.09 16 7 C -0.01 -0.57 2.57 -10.47 -0.03 -0.60 16 8 H 0.03 1.30 5.34 -2.38 -0.01 1.29 16 9 C -0.48 -26.81 6.08 25.60 0.16 -26.66 16 10 H 0.04 2.24 7.82 -2.91 -0.02 2.22 16 11 C 0.02 1.12 5.33 84.65 0.45 1.58 16 12 N -0.95 -59.09 13.96 21.45 0.30 -58.79 16 13 Si 0.93 45.61 26.85 68.60 1.84 47.45 16 14 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 15 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 16 H -0.26 -12.22 6.73 99.48 0.67 -11.55 16 17 C -0.11 -4.57 6.62 31.89 0.21 -4.36 16 18 C 0.05 1.48 6.50 86.63 0.56 2.05 16 19 N -0.53 -18.87 4.80 -874.22 -4.20 -23.07 16 20 C 0.05 1.51 5.18 84.43 0.44 1.95 16 21 C 0.06 1.60 5.13 84.69 0.43 2.03 16 22 H 0.08 1.58 7.93 -2.38 -0.02 1.56 16 23 H 0.03 0.69 8.14 -2.38 -0.02 0.67 16 24 H 0.06 1.50 8.09 -2.39 -0.02 1.48 16 25 H 0.04 1.44 7.05 -2.39 -0.02 1.42 16 26 H 0.06 1.94 7.57 -2.39 -0.02 1.92 16 27 H 0.03 1.43 7.87 -2.39 -0.02 1.41 16 28 H 0.06 2.93 6.23 -2.39 -0.01 2.91 16 29 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 30 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.05 2.28 7.81 -2.39 -0.02 2.26 16 32 H 0.05 1.43 7.96 -2.38 -0.02 1.42 16 33 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 34 H 0.03 0.90 7.65 -2.39 -0.02 0.88 16 35 H 0.10 2.26 8.02 -2.39 -0.02 2.24 16 36 H 0.09 1.83 7.59 -2.39 -0.02 1.81 16 37 H 0.04 1.09 7.17 -2.39 -0.02 1.08 16 Total: -1.00 -64.97 273.92 -0.88 -65.85 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 0.98 Total: 7.25 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 4.13 Total: -17.41 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -7.84 Total: -103.14 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.84 Total: 47.45 kcal Total: -64.97 -0.88 -65.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259838016.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.975 kcal (2) G-P(sol) polarization free energy of solvation -64.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds