Wall clock time and date at job start Mon Mar 30 2020 03:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47024 * 110.99979 * 2 1 4 4 C 1.52924 * 109.04587 * 183.74743 * 3 2 1 5 5 N 1.47120 * 109.74759 * 301.17642 * 4 3 2 6 6 C 1.47051 * 109.88955 * 182.15524 * 5 4 3 7 7 H 1.08997 * 109.40227 * 295.27734 * 6 5 4 8 8 C 1.50701 * 109.40132 * 55.10809 * 6 5 4 9 9 H 1.08005 * 120.00008 * 359.97438 * 8 6 5 10 10 C 1.37874 * 120.00448 * 180.02562 * 8 6 5 11 11 N 1.31521 * 119.99608 * 359.97438 * 10 8 6 12 12 Si 1.86793 * 120.00320 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47459 * 59.99589 * 12 10 8 14 14 H 1.48508 * 109.47146 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46901 * 299.99383 * 12 10 8 16 16 C 1.52912 * 109.88294 * 175.23182 * 6 5 4 17 17 C 1.53180 * 108.99740 * 59.60258 * 16 6 5 18 18 C 1.53005 * 108.87643 * 301.71742 * 17 16 6 19 19 C 1.46836 * 111.17892 * 58.42838 * 5 4 3 20 20 H 1.08999 * 109.51436 * 62.76580 * 19 5 4 21 21 C 1.46835 * 111.00151 * 123.36129 * 2 1 3 22 22 H 1.08994 * 109.47629 * 63.95003 * 1 2 3 23 23 H 1.09004 * 109.47222 * 183.95243 * 1 2 3 24 24 H 1.08999 * 109.47143 * 303.94696 * 1 2 3 25 25 H 1.09006 * 109.54341 * 63.87994 * 3 2 1 26 26 H 1.09006 * 109.54456 * 303.62026 * 3 2 1 27 27 H 1.08999 * 109.42510 * 181.09691 * 4 3 2 28 28 H 1.08998 * 109.42534 * 61.26744 * 4 3 2 29 29 H 0.96994 * 119.99751 * 180.02562 * 11 10 8 30 30 H 1.08997 * 109.55057 * 179.45478 * 16 6 5 31 31 H 1.09001 * 109.55104 * 299.74745 * 16 6 5 32 32 H 1.08999 * 109.56867 * 61.53287 * 17 16 6 33 33 H 1.09002 * 109.57077 * 181.77501 * 17 16 6 34 34 H 1.08994 * 109.44528 * 297.88254 * 18 17 16 35 35 H 1.08999 * 109.44563 * 177.98481 * 18 17 16 36 36 H 1.08997 * 109.42141 * 56.67954 * 21 2 1 37 37 H 1.09001 * 109.42015 * 296.85591 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3726 0.0000 4 6 3.5214 1.3216 -0.0945 5 7 4.0646 0.5610 1.0417 6 6 5.5339 0.5536 0.9821 7 1 5.8574 0.0147 0.0916 8 6 6.0395 1.9720 0.9202 9 1 5.3403 2.7952 0.9243 10 6 7.3945 2.2188 0.8573 11 7 8.2459 1.2163 0.8518 12 14 8.0212 3.9768 0.7813 13 1 7.5783 4.7130 1.9926 14 1 9.5050 3.9712 0.7209 15 1 7.4786 4.6438 -0.4294 16 6 6.1013 -0.1342 2.2243 17 6 5.5764 -1.5721 2.2817 18 6 4.0470 -1.5400 2.3106 19 6 3.5242 -0.8039 1.0733 20 1 3.8294 -1.3373 0.1730 21 6 1.9953 -0.7538 1.1449 22 1 -0.3634 0.4513 -0.9232 23 1 -0.3634 -1.0253 0.0708 24 1 -0.3633 0.5739 0.8525 25 1 1.7044 1.8751 0.9223 26 1 1.5956 1.9169 -0.8554 27 1 3.9199 2.3359 -0.0753 28 1 3.8108 0.8368 -1.0269 29 1 9.1991 1.3899 0.8079 30 1 7.1899 -0.1452 2.1699 31 1 5.7847 0.4056 3.1168 32 1 5.9135 -2.1192 1.4013 33 1 5.9502 -2.0616 3.1810 34 1 3.7119 -1.0223 3.2093 35 1 3.6627 -2.5599 2.3154 36 1 1.5980 -1.7686 1.1242 37 1 1.6916 -0.2654 2.0709 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259857982.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:12 Heat of formation + Delta-G solvation = 4.772007 kcal Electronic energy + Delta-G solvation = -16594.710823 eV Core-core repulsion = 14178.378687 eV Total energy + Delta-G solvation = -2416.332136 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.18537 -36.20426 -33.17409 -32.51356 -30.39591 -28.68923 -26.39736 -25.10171 -23.06326 -22.37098 -21.04914 -19.18693 -18.70563 -16.29797 -15.52384 -14.84028 -14.60543 -14.43130 -14.34923 -13.54276 -13.24815 -13.01101 -12.50044 -12.21223 -11.94852 -11.84835 -11.58288 -11.10169 -10.95665 -10.71572 -10.68731 -10.41650 -10.30989 -10.12214 -9.94095 -9.55645 -9.15681 -8.70343 -8.35504 -8.06784 -7.11382 -5.99065 -4.03820 3.32908 3.37368 3.40050 4.25161 4.41483 4.93120 5.26087 5.31497 5.36650 5.56472 5.61197 5.68328 5.82745 5.87893 5.91219 5.95684 6.00839 6.04166 6.30622 6.39758 6.43485 6.56480 6.61937 6.80400 6.88110 6.91572 7.16685 7.27955 7.32875 7.38559 7.62289 7.77842 7.85609 8.24546 8.37221 8.65578 9.02330 9.60759 11.07095 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.031995 B = 0.009495 C = 0.007612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.927625 B = 2948.076912 C = 3677.520772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.055 3.945 4 C 0.065 3.935 5 N -0.528 5.528 6 C 0.219 3.781 7 H -0.002 1.002 8 C -0.505 4.505 9 H 0.062 0.938 10 C 0.060 3.940 11 N -0.892 5.892 12 Si 0.896 3.104 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.278 1.278 16 C -0.105 4.105 17 C -0.122 4.122 18 C -0.105 4.105 19 C 0.088 3.912 20 H 0.036 0.964 21 C 0.064 3.936 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.021 0.979 25 H 0.037 0.963 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.028 0.972 29 H 0.261 0.739 30 H 0.095 0.905 31 H 0.042 0.958 32 H 0.048 0.952 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.443 -3.306 0.406 10.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.270 5.270 3 C -0.073 4.073 4 C -0.064 4.064 5 N -0.254 5.254 6 C 0.113 3.887 7 H 0.016 0.984 8 C -0.544 4.544 9 H 0.080 0.920 10 C -0.141 4.141 11 N -0.531 5.531 12 Si 0.724 3.276 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.203 1.203 16 C -0.144 4.144 17 C -0.160 4.160 18 C -0.143 4.143 19 C -0.022 4.022 20 H 0.054 0.946 21 C -0.064 4.064 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.040 0.960 25 H 0.055 0.945 26 H 0.087 0.913 27 H 0.109 0.891 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -10.225 -3.339 0.400 10.764 hybrid contribution 0.321 0.863 -0.057 0.923 sum -9.904 -2.476 0.342 10.214 Atomic orbital electron populations 1.22323 0.88265 1.01244 1.00385 1.62259 1.06882 1.14946 1.42926 1.22295 0.96649 0.88337 0.99990 1.22028 0.91293 1.00534 0.92500 1.62418 1.10419 1.10992 1.41528 1.19207 0.80137 0.96039 0.93335 0.98414 1.21148 0.91473 0.91754 1.50016 0.91951 1.24927 0.96868 0.97072 0.95269 1.69874 1.02239 1.30274 1.50753 0.86601 0.77524 0.84930 0.78577 1.20282 1.21369 1.20349 1.21648 1.03136 0.91012 0.98586 1.21669 0.94281 1.00108 0.99929 1.21547 0.96952 0.98036 0.97794 1.21547 0.92170 0.91441 0.97003 0.94611 1.22214 0.95555 0.97291 0.91348 0.91747 0.91925 0.96003 0.94450 0.91260 0.89118 0.95375 0.92934 0.88694 0.93928 0.93284 0.93583 0.91997 0.93206 0.91470 0.94553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.63 60.07 0.58 0.91 16 2 N -0.55 -8.83 4.98 -242.82 -1.21 -10.04 16 3 C 0.06 0.94 5.62 -3.80 -0.02 0.92 16 4 C 0.06 1.33 5.22 -3.74 -0.02 1.32 16 5 N -0.53 -11.65 4.53 -219.76 -1.00 -12.65 16 6 C 0.22 5.55 1.77 -68.83 -0.12 5.43 16 7 H 0.00 -0.05 8.14 -51.93 -0.42 -0.47 16 8 C -0.51 -13.77 7.86 -34.44 -0.27 -14.04 16 9 H 0.06 1.69 6.28 -52.48 -0.33 1.36 16 10 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 11 N -0.89 -25.31 11.29 55.43 0.63 -24.68 16 12 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 C -0.11 -2.54 5.14 -26.68 -0.14 -2.68 16 17 C -0.12 -2.44 6.01 -26.64 -0.16 -2.60 16 18 C -0.10 -1.88 5.29 -26.64 -0.14 -2.02 16 19 C 0.09 1.70 2.35 -67.59 -0.16 1.54 16 20 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 21 C 0.06 1.06 4.81 -3.78 -0.02 1.04 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.70 8.07 -51.93 -0.42 0.28 16 24 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.09 1.96 6.00 -51.93 -0.31 1.65 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.09 2.53 6.05 -51.93 -0.31 2.22 16 31 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 279.31 15.07 4.21 4.21 Total: -1.00 -28.19 279.31 -9.38 -37.57 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -6.42 Total: -2.00 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -0.57 Total: -8.64 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -1.58 Total: -47.37 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.19 -9.38 -37.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259857982.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.345 kcal (2) G-P(sol) polarization free energy of solvation -28.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds