Wall clock time and date at job start Mon Mar 30 2020 03:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47024 * 110.99979 * 2 1 4 4 C 1.52924 * 109.04587 * 183.74743 * 3 2 1 5 5 N 1.47120 * 109.74759 * 301.17642 * 4 3 2 6 6 C 1.47051 * 109.88955 * 182.15524 * 5 4 3 7 7 H 1.08997 * 109.40227 * 295.27734 * 6 5 4 8 8 C 1.50701 * 109.40132 * 55.10809 * 6 5 4 9 9 H 1.08005 * 120.00008 * 359.97438 * 8 6 5 10 10 C 1.37874 * 120.00448 * 180.02562 * 8 6 5 11 11 N 1.31521 * 119.99608 * 359.97438 * 10 8 6 12 12 Si 1.86793 * 120.00320 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47459 * 59.99589 * 12 10 8 14 14 H 1.48508 * 109.47146 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46901 * 299.99383 * 12 10 8 16 16 C 1.52912 * 109.88294 * 175.23182 * 6 5 4 17 17 C 1.53180 * 108.99740 * 59.60258 * 16 6 5 18 18 C 1.53005 * 108.87643 * 301.71742 * 17 16 6 19 19 C 1.46836 * 111.17892 * 58.42838 * 5 4 3 20 20 H 1.08999 * 109.51436 * 62.76580 * 19 5 4 21 21 C 1.46835 * 111.00151 * 123.36129 * 2 1 3 22 22 H 1.08994 * 109.47629 * 63.95003 * 1 2 3 23 23 H 1.09004 * 109.47222 * 183.95243 * 1 2 3 24 24 H 1.08999 * 109.47143 * 303.94696 * 1 2 3 25 25 H 1.09006 * 109.54341 * 63.87994 * 3 2 1 26 26 H 1.09006 * 109.54456 * 303.62026 * 3 2 1 27 27 H 1.08999 * 109.42510 * 181.09691 * 4 3 2 28 28 H 1.08998 * 109.42534 * 61.26744 * 4 3 2 29 29 H 0.96994 * 119.99751 * 180.02562 * 11 10 8 30 30 H 1.08997 * 109.55057 * 179.45478 * 16 6 5 31 31 H 1.09001 * 109.55104 * 299.74745 * 16 6 5 32 32 H 1.08999 * 109.56867 * 61.53287 * 17 16 6 33 33 H 1.09002 * 109.57077 * 181.77501 * 17 16 6 34 34 H 1.08994 * 109.44528 * 297.88254 * 18 17 16 35 35 H 1.08999 * 109.44563 * 177.98481 * 18 17 16 36 36 H 1.08997 * 109.42141 * 56.67954 * 21 2 1 37 37 H 1.09001 * 109.42015 * 296.85591 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3726 0.0000 4 6 3.5214 1.3216 -0.0945 5 7 4.0646 0.5610 1.0417 6 6 5.5339 0.5536 0.9821 7 1 5.8574 0.0147 0.0916 8 6 6.0395 1.9720 0.9202 9 1 5.3403 2.7952 0.9243 10 6 7.3945 2.2188 0.8573 11 7 8.2459 1.2163 0.8518 12 14 8.0212 3.9768 0.7813 13 1 7.5783 4.7130 1.9926 14 1 9.5050 3.9712 0.7209 15 1 7.4786 4.6438 -0.4294 16 6 6.1013 -0.1342 2.2243 17 6 5.5764 -1.5721 2.2817 18 6 4.0470 -1.5400 2.3106 19 6 3.5242 -0.8039 1.0733 20 1 3.8294 -1.3373 0.1730 21 6 1.9953 -0.7538 1.1449 22 1 -0.3634 0.4513 -0.9232 23 1 -0.3634 -1.0253 0.0708 24 1 -0.3633 0.5739 0.8525 25 1 1.7044 1.8751 0.9223 26 1 1.5956 1.9169 -0.8554 27 1 3.9199 2.3359 -0.0753 28 1 3.8108 0.8368 -1.0269 29 1 9.1991 1.3899 0.8079 30 1 7.1899 -0.1452 2.1699 31 1 5.7847 0.4056 3.1168 32 1 5.9135 -2.1192 1.4013 33 1 5.9502 -2.0616 3.1810 34 1 3.7119 -1.0223 3.2093 35 1 3.6627 -2.5599 2.3154 36 1 1.5980 -1.7686 1.1242 37 1 1.6916 -0.2654 2.0709 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259857982.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:12 Heat of formation + Delta-G solvation = -14.777409 kcal Electronic energy + Delta-G solvation = -16595.558550 eV Core-core repulsion = 14178.378687 eV Total energy + Delta-G solvation = -2417.179863 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.74770 -37.70593 -35.02697 -34.23040 -32.10394 -30.26744 -27.82580 -26.98544 -24.53938 -23.85499 -22.85664 -20.69035 -20.44460 -18.36577 -17.20505 -16.28249 -16.19952 -16.04642 -15.66777 -15.18606 -14.88309 -14.68809 -14.25560 -13.79289 -13.47471 -13.06979 -13.01340 -12.82636 -12.65576 -12.41878 -12.31269 -12.17231 -11.86704 -11.84081 -11.78684 -11.40437 -10.86396 -10.64059 -10.39499 -9.30519 -8.94239 -8.10190 -6.22819 1.41419 1.43288 1.50764 2.41637 3.03264 3.14958 3.31039 3.91702 4.05136 4.12899 4.29583 4.35750 4.44513 4.49337 4.51508 4.66485 4.74184 4.76761 4.83813 4.95633 4.98476 5.00752 5.03087 5.09937 5.22386 5.24567 5.34460 5.46395 5.64022 5.75229 5.80154 6.06653 6.15370 6.29853 6.42711 6.78765 6.91519 7.45852 8.94785 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.031995 B = 0.009495 C = 0.007612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.927625 B = 2948.076912 C = 3677.520772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.561 5.561 3 C 0.067 3.933 4 C 0.065 3.935 5 N -0.532 5.532 6 C 0.225 3.775 7 H -0.048 1.048 8 C -0.523 4.523 9 H 0.059 0.941 10 C 0.011 3.989 11 N -0.919 5.919 12 Si 0.960 3.040 13 H -0.271 1.271 14 H -0.284 1.284 15 H -0.272 1.272 16 C -0.100 4.100 17 C -0.117 4.117 18 C -0.098 4.098 19 C 0.081 3.919 20 H 0.014 0.986 21 C 0.072 3.928 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.028 0.972 25 H 0.037 0.963 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.006 0.994 29 H 0.261 0.739 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.039 0.961 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.517 -3.493 0.973 13.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.286 5.286 3 C -0.061 4.061 4 C -0.063 4.063 5 N -0.257 5.257 6 C 0.118 3.882 7 H -0.030 1.030 8 C -0.561 4.561 9 H 0.077 0.923 10 C -0.187 4.187 11 N -0.559 5.559 12 Si 0.785 3.215 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.197 1.197 16 C -0.139 4.139 17 C -0.155 4.155 18 C -0.136 4.136 19 C -0.028 4.028 20 H 0.032 0.968 21 C -0.056 4.056 22 H 0.095 0.905 23 H 0.098 0.902 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.109 0.891 27 H 0.090 0.910 28 H 0.025 0.975 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.113 0.887 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -12.330 -3.532 0.967 12.862 hybrid contribution 0.960 0.893 -0.276 1.340 sum -11.370 -2.639 0.691 11.693 Atomic orbital electron populations 1.22399 0.85477 1.02738 1.01364 1.62240 1.09364 1.14031 1.42942 1.22136 0.93506 0.89517 1.00946 1.22000 0.94281 0.98941 0.91092 1.62413 1.08242 1.13132 1.41942 1.18990 0.82555 0.94744 0.91910 1.03046 1.21449 0.91886 0.92685 1.50121 0.92284 1.25724 0.97063 1.01047 0.94891 1.70021 1.02365 1.32200 1.51301 0.85589 0.76965 0.80142 0.78798 1.19654 1.20917 1.19677 1.21456 1.01266 0.93816 0.97326 1.21599 0.96227 0.97047 1.00623 1.21527 0.94922 1.00077 0.97082 1.21725 0.94657 0.89560 0.96850 0.96758 1.22147 0.92898 0.99008 0.91554 0.90507 0.90161 0.95305 0.94449 0.89109 0.91009 0.97533 0.92961 0.91770 0.94853 0.94253 0.91202 0.91539 0.89435 0.88670 0.94391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.63 127.69 1.23 1.82 16 2 N -0.56 -16.69 4.98 -922.14 -4.60 -21.28 16 3 C 0.07 2.17 5.62 86.25 0.48 2.66 16 4 C 0.07 2.74 5.22 86.24 0.45 3.19 16 5 N -0.53 -23.84 4.53 -849.18 -3.85 -27.69 16 6 C 0.22 11.91 1.77 44.11 0.08 11.99 16 7 H -0.05 -2.91 8.14 -2.39 -0.02 -2.93 16 8 C -0.52 -29.50 7.86 25.60 0.20 -29.30 16 9 H 0.06 3.29 6.28 -2.91 -0.02 3.27 16 10 C 0.01 0.64 5.30 84.65 0.45 1.09 16 11 N -0.92 -53.95 11.29 21.45 0.24 -53.71 16 12 Si 0.96 44.31 29.54 68.60 2.03 46.34 16 13 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 14 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 16 C -0.10 -4.97 5.14 30.63 0.16 -4.81 16 17 C -0.12 -4.63 6.01 30.66 0.18 -4.45 16 18 C -0.10 -3.30 5.29 30.65 0.16 -3.14 16 19 C 0.08 3.07 2.35 45.03 0.11 3.17 16 20 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 21 C 0.07 2.16 4.81 86.36 0.42 2.58 16 22 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.08 1.45 8.07 -2.38 -0.02 1.43 16 24 H 0.03 0.58 8.14 -2.39 -0.02 0.57 16 25 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 27 H 0.07 3.21 6.00 -2.39 -0.01 3.20 16 28 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.06 3.57 6.05 -2.39 -0.01 3.55 16 31 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.10 2.35 8.09 -2.39 -0.02 2.33 16 37 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -62.90 279.31 -1.24 -64.14 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 1.01 Total: 7.42 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 3.92 Total: -15.21 kcal Atomic # 7 Polarization: -94.48 SS G_CDS: -8.20 Total: -102.68 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -62.90 -1.24 -64.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259857982.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.361 kcal (2) G-P(sol) polarization free energy of solvation -62.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds