Wall clock time and date at job start Mon Mar 30 2020 03:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36929 * 120.00087 * 2 1 4 4 H 1.08005 * 120.00329 * 203.07029 * 3 2 1 5 5 C 1.38817 * 120.00108 * 23.07010 * 3 2 1 6 6 N 1.31617 * 120.00221 * 11.62909 * 5 3 2 7 7 Si 1.86806 * 120.00073 * 191.63135 * 5 3 2 8 8 H 1.48502 * 109.47091 * 359.97438 * 7 5 3 9 9 H 1.48504 * 109.46988 * 119.99710 * 7 5 3 10 10 H 1.48495 * 109.46926 * 239.99562 * 7 5 3 11 11 C 1.46507 * 119.99944 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47019 * 270.00249 * 11 2 1 13 13 H 1.09002 * 110.64432 * 303.30199 * 12 11 2 14 14 C 1.54594 * 110.72763 * 66.45212 * 12 11 2 15 15 C 1.53997 * 105.13700 * 140.31458 * 14 12 11 16 16 N 1.47896 * 107.06214 * 1.22538 * 15 14 12 17 17 C 1.46903 * 111.00280 * 214.15766 * 16 15 14 18 18 C 1.52999 * 117.49606 * 59.87313 * 17 16 15 19 19 C 1.53004 * 60.02905 * 107.50295 * 18 17 16 20 20 C 1.48536 * 105.81893 * 334.67148 * 16 15 14 21 21 H 1.09008 * 109.46960 * 273.93466 * 1 2 3 22 22 H 1.08995 * 109.47109 * 33.93235 * 1 2 3 23 23 H 1.08998 * 109.47454 * 153.94276 * 1 2 3 24 24 H 0.96994 * 120.00349 * 180.02562 * 6 5 3 25 25 H 1.08997 * 109.46819 * 149.99710 * 11 2 1 26 26 H 1.09000 * 109.46946 * 29.99892 * 11 2 1 27 27 H 1.08998 * 110.30717 * 21.40104 * 14 12 11 28 28 H 1.09001 * 110.30768 * 259.23059 * 14 12 11 29 29 H 1.09005 * 109.91627 * 241.87163 * 15 14 12 30 30 H 1.09001 * 109.91662 * 120.58040 * 15 14 12 31 31 H 1.08996 * 115.55326 * 274.18405 * 17 16 15 32 32 H 1.08990 * 117.50025 * 359.97438 * 18 17 16 33 33 H 1.09007 * 117.49251 * 215.00285 * 18 17 16 34 34 H 1.09004 * 117.49818 * 107.48012 * 19 18 17 35 35 H 1.09004 * 117.49434 * 252.47085 * 19 18 17 36 36 H 1.09000 * 110.67064 * 157.64136 * 20 16 15 37 37 H 1.09004 * 110.66618 * 280.77061 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1649 1.2233 -0.3665 5 6 1.5389 2.3400 0.4711 6 7 0.3991 2.2616 1.1245 7 14 2.3347 4.0044 0.1775 8 1 3.6015 3.8214 -0.5754 9 1 1.4114 4.8629 -0.6073 10 1 2.6238 4.6517 1.4822 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7098 1.4433 13 1 2.9908 -0.9370 1.9919 14 6 1.1234 -2.0585 2.1518 15 6 1.4355 -3.3045 3.0013 16 7 2.8675 -3.6168 2.8038 17 6 3.0997 -5.0670 2.8384 18 6 2.3742 -5.9235 1.7988 19 6 3.8807 -5.6859 1.6765 20 6 3.2260 -3.0518 1.4777 21 1 -0.3633 0.0705 1.0253 22 1 -0.3633 0.8526 -0.5736 23 1 -0.3634 -0.9232 -0.4514 24 1 -0.0279 3.0681 1.4534 25 1 3.1499 -1.1387 -0.5134 26 1 1.6084 -2.0287 -0.5129 27 1 0.3512 -2.2855 1.4168 28 1 0.8078 -1.2340 2.7910 29 1 0.8233 -4.1431 2.6695 30 1 1.2430 -3.0942 4.0534 31 1 3.2477 -5.4959 3.8294 32 1 1.7243 -5.4112 1.0896 33 1 2.0445 -6.9161 2.1061 34 1 4.5422 -6.5221 1.9036 35 1 4.2222 -5.0175 0.8861 36 1 4.3001 -2.8786 1.4109 37 1 2.8908 -3.7098 0.6759 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260156109.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:38 Heat of formation + Delta-G solvation = 56.876489 kcal Electronic energy + Delta-G solvation = -16060.173057 eV Core-core repulsion = 13646.100340 eV Total energy + Delta-G solvation = -2414.072716 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.57074 -36.36612 -34.60448 -31.54901 -29.53095 -28.73245 -25.95574 -25.13406 -22.58199 -22.33191 -20.94345 -19.52524 -19.43052 -16.59958 -16.32273 -15.55858 -15.06605 -14.57844 -13.72611 -13.48721 -13.10080 -13.06826 -12.33310 -12.16010 -11.88986 -11.63645 -11.45899 -11.13301 -10.87343 -10.69404 -10.68894 -10.53685 -10.36307 -10.13135 -9.94054 -9.85386 -9.73926 -9.64691 -8.49146 -8.14689 -6.68082 -5.67281 -3.12506 3.40960 3.48212 3.50167 3.72067 4.20498 4.54749 4.75963 4.88292 4.91479 5.19591 5.38370 5.46964 5.55378 5.56900 5.65046 5.69732 5.82422 5.96339 6.03340 6.08571 6.15706 6.21687 6.34724 6.42318 6.60707 6.73383 6.80289 6.93281 7.06425 7.25666 7.31190 7.43007 7.78408 7.86346 8.46245 9.30042 9.93480 10.42964 11.38123 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.050121 B = 0.006385 C = 0.006216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.513092 B = 4384.470314 C = 4503.671052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.600 5.600 3 C -0.251 4.251 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.902 3.098 8 H -0.279 1.279 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.161 3.839 12 C -0.106 4.106 13 H 0.082 0.918 14 C -0.112 4.112 15 C 0.036 3.964 16 N -0.488 5.488 17 C 0.016 3.984 18 C -0.217 4.217 19 C -0.185 4.185 20 C 0.034 3.966 21 H 0.030 0.970 22 H 0.041 0.959 23 H -0.007 1.007 24 H 0.251 0.749 25 H 0.043 0.957 26 H 0.033 0.967 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.120 0.880 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.961 -13.691 1.408 14.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.322 5.322 3 C -0.380 4.380 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.554 5.554 7 Si 0.733 3.267 8 H -0.204 1.204 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.033 3.967 12 C -0.128 4.128 13 H 0.100 0.900 14 C -0.150 4.150 15 C -0.091 4.091 16 N -0.210 5.210 17 C -0.094 4.094 18 C -0.256 4.256 19 C -0.222 4.222 20 C -0.094 4.094 21 H 0.048 0.952 22 H 0.060 0.940 23 H 0.012 0.988 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.138 0.862 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.094 0.906 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.157 -13.305 1.883 13.804 hybrid contribution -0.151 0.500 -0.568 0.772 sum 3.006 -12.805 1.315 13.219 Atomic orbital electron populations 1.20798 0.82698 0.95219 0.99210 1.43925 1.01802 1.00613 1.85862 1.19250 0.98320 0.85551 1.34912 0.91446 1.25019 0.97822 0.98464 0.98393 1.70063 1.18592 1.26925 1.39813 0.86209 0.78622 0.84487 0.77392 1.20373 1.21732 1.21785 1.20807 0.95549 0.88173 0.92145 1.22846 0.94772 0.94779 1.00445 0.89992 1.22315 0.98091 0.96205 0.98376 1.22936 0.87710 0.97688 1.00771 1.64776 1.18351 1.07997 1.29869 1.23022 1.03572 0.88060 0.94706 1.23383 0.95188 1.02086 1.04974 1.23304 0.94352 1.03249 1.01319 1.23415 1.00445 0.96217 0.89324 0.95204 0.94027 0.98849 0.93917 0.93872 0.94829 0.92080 0.90857 0.93977 0.90972 0.86228 0.88793 0.88868 0.88682 0.87982 0.90590 0.93769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.10 7.73 59.85 0.46 4.56 16 2 N -0.60 -15.11 2.84 -181.11 -0.51 -15.62 16 3 C -0.25 -6.93 9.66 -15.06 -0.15 -7.08 16 4 H 0.07 1.84 7.85 -52.48 -0.41 1.43 16 5 C 0.00 0.03 5.12 -17.43 -0.09 -0.06 16 6 N -0.91 -26.63 10.65 55.49 0.59 -26.04 16 7 Si 0.90 22.10 29.57 -169.99 -5.03 17.07 16 8 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 9 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 11 C 0.16 3.33 5.11 -4.04 -0.02 3.31 16 12 C -0.11 -2.03 3.31 -88.76 -0.29 -2.32 16 13 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 14 C -0.11 -2.04 5.56 -25.37 -0.14 -2.19 16 15 C 0.04 0.56 6.58 -2.76 -0.02 0.54 16 16 N -0.49 -7.48 5.54 -222.45 -1.23 -8.71 16 17 C 0.02 0.20 6.33 -67.68 -0.43 -0.22 16 18 C -0.22 -2.45 8.85 -26.73 -0.24 -2.69 16 19 C -0.18 -2.05 9.57 -26.69 -0.26 -2.30 16 20 C 0.03 0.53 4.51 -1.90 -0.01 0.53 16 21 H 0.03 0.79 7.22 -51.92 -0.38 0.41 16 22 H 0.04 1.11 7.23 -51.93 -0.38 0.74 16 23 H -0.01 -0.15 7.85 -51.93 -0.41 -0.56 16 24 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.04 0.87 8.03 -51.93 -0.42 0.46 16 26 H 0.03 0.64 7.80 -51.93 -0.40 0.24 16 27 H 0.06 1.12 7.18 -51.93 -0.37 0.75 16 28 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 29 H 0.04 0.60 6.72 -51.93 -0.35 0.25 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.09 1.17 7.19 -51.93 -0.37 0.79 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.10 1.19 6.10 -51.93 -0.32 0.87 16 36 H 0.08 1.16 8.06 -51.93 -0.42 0.75 16 37 H 0.04 0.66 5.67 -51.93 -0.29 0.36 16 LS Contribution 286.32 15.07 4.31 4.31 Total: -1.00 -29.12 286.32 -9.23 -38.35 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -6.19 Total: -1.44 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -1.17 Total: -7.92 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -1.16 Total: -50.37 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.12 -9.23 -38.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260156109.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.225 kcal (2) G-P(sol) polarization free energy of solvation -29.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds