Wall clock time and date at job start Mon Mar 30 2020 03:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36929 * 120.00087 * 2 1 4 4 H 1.08005 * 120.00329 * 203.07029 * 3 2 1 5 5 C 1.38817 * 120.00108 * 23.07010 * 3 2 1 6 6 N 1.31617 * 120.00221 * 11.62909 * 5 3 2 7 7 Si 1.86806 * 120.00073 * 191.63135 * 5 3 2 8 8 H 1.48502 * 109.47091 * 359.97438 * 7 5 3 9 9 H 1.48504 * 109.46988 * 119.99710 * 7 5 3 10 10 H 1.48495 * 109.46926 * 239.99562 * 7 5 3 11 11 C 1.46507 * 119.99944 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47019 * 270.00249 * 11 2 1 13 13 H 1.09002 * 110.64432 * 303.30199 * 12 11 2 14 14 C 1.54594 * 110.72763 * 66.45212 * 12 11 2 15 15 C 1.53997 * 105.13700 * 140.31458 * 14 12 11 16 16 N 1.47896 * 107.06214 * 1.22538 * 15 14 12 17 17 C 1.46903 * 111.00280 * 214.15766 * 16 15 14 18 18 C 1.52999 * 117.49606 * 59.87313 * 17 16 15 19 19 C 1.53004 * 60.02905 * 107.50295 * 18 17 16 20 20 C 1.48536 * 105.81893 * 334.67148 * 16 15 14 21 21 H 1.09008 * 109.46960 * 273.93466 * 1 2 3 22 22 H 1.08995 * 109.47109 * 33.93235 * 1 2 3 23 23 H 1.08998 * 109.47454 * 153.94276 * 1 2 3 24 24 H 0.96994 * 120.00349 * 180.02562 * 6 5 3 25 25 H 1.08997 * 109.46819 * 149.99710 * 11 2 1 26 26 H 1.09000 * 109.46946 * 29.99892 * 11 2 1 27 27 H 1.08998 * 110.30717 * 21.40104 * 14 12 11 28 28 H 1.09001 * 110.30768 * 259.23059 * 14 12 11 29 29 H 1.09005 * 109.91627 * 241.87163 * 15 14 12 30 30 H 1.09001 * 109.91662 * 120.58040 * 15 14 12 31 31 H 1.08996 * 115.55326 * 274.18405 * 17 16 15 32 32 H 1.08990 * 117.50025 * 359.97438 * 18 17 16 33 33 H 1.09007 * 117.49251 * 215.00285 * 18 17 16 34 34 H 1.09004 * 117.49818 * 107.48012 * 19 18 17 35 35 H 1.09004 * 117.49434 * 252.47085 * 19 18 17 36 36 H 1.09000 * 110.67064 * 157.64136 * 20 16 15 37 37 H 1.09004 * 110.66618 * 280.77061 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1649 1.2233 -0.3665 5 6 1.5389 2.3400 0.4711 6 7 0.3991 2.2616 1.1245 7 14 2.3347 4.0044 0.1775 8 1 3.6015 3.8214 -0.5754 9 1 1.4114 4.8629 -0.6073 10 1 2.6238 4.6517 1.4822 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7098 1.4433 13 1 2.9908 -0.9370 1.9919 14 6 1.1234 -2.0585 2.1518 15 6 1.4355 -3.3045 3.0013 16 7 2.8675 -3.6168 2.8038 17 6 3.0997 -5.0670 2.8384 18 6 2.3742 -5.9235 1.7988 19 6 3.8807 -5.6859 1.6765 20 6 3.2260 -3.0518 1.4777 21 1 -0.3633 0.0705 1.0253 22 1 -0.3633 0.8526 -0.5736 23 1 -0.3634 -0.9232 -0.4514 24 1 -0.0279 3.0681 1.4534 25 1 3.1499 -1.1387 -0.5134 26 1 1.6084 -2.0287 -0.5129 27 1 0.3512 -2.2855 1.4168 28 1 0.8078 -1.2340 2.7910 29 1 0.8233 -4.1431 2.6695 30 1 1.2430 -3.0942 4.0534 31 1 3.2477 -5.4959 3.8294 32 1 1.7243 -5.4112 1.0896 33 1 2.0445 -6.9161 2.1061 34 1 4.5422 -6.5221 1.9036 35 1 4.2222 -5.0175 0.8861 36 1 4.3001 -2.8786 1.4109 37 1 2.8908 -3.7098 0.6759 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260156109.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:37 Heat of formation + Delta-G solvation = 38.976842 kcal Electronic energy + Delta-G solvation = -16060.949244 eV Core-core repulsion = 13646.100340 eV Total energy + Delta-G solvation = -2414.848903 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.77043 -37.92884 -36.13523 -33.42241 -31.16957 -30.07307 -27.95615 -26.86024 -23.79640 -23.43814 -22.63329 -20.94934 -20.65239 -18.65167 -17.49093 -16.98067 -16.65355 -16.02080 -15.44887 -15.11522 -14.70391 -14.64042 -13.73932 -13.53220 -13.42963 -13.18798 -12.89020 -12.64242 -12.53701 -12.43487 -12.32476 -12.08220 -11.96685 -11.67953 -11.53817 -11.44541 -11.28089 -10.99102 -10.61982 -9.28242 -8.74476 -7.81049 -5.28295 1.45934 1.47029 1.57349 2.52156 2.79128 3.09276 3.33858 3.59634 3.75406 3.95396 4.00222 4.03548 4.16692 4.21666 4.35838 4.56044 4.65019 4.71812 4.76463 4.83705 4.89778 4.91308 4.98744 5.07401 5.14281 5.20665 5.23610 5.35483 5.39497 5.50623 5.66171 5.75155 5.92123 6.18623 6.36113 7.18129 7.90493 8.34074 9.22878 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.050121 B = 0.006385 C = 0.006216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.513092 B = 4384.470314 C = 4503.671052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.615 5.615 3 C -0.259 4.259 4 H 0.069 0.931 5 C -0.054 4.054 6 N -0.939 5.939 7 Si 0.966 3.034 8 H -0.266 1.266 9 H -0.291 1.291 10 H -0.294 1.294 11 C 0.160 3.840 12 C -0.103 4.103 13 H 0.043 0.957 14 C -0.107 4.107 15 C 0.046 3.954 16 N -0.502 5.502 17 C -0.002 4.002 18 C -0.209 4.209 19 C -0.177 4.177 20 C 0.050 3.950 21 H 0.006 0.994 22 H 0.012 0.988 23 H 0.025 0.975 24 H 0.246 0.754 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.038 0.962 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.132 0.868 32 H 0.083 0.917 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.954 -15.634 0.953 16.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.338 5.338 3 C -0.389 4.389 4 H 0.087 0.913 5 C -0.248 4.248 6 N -0.586 5.586 7 Si 0.795 3.205 8 H -0.191 1.191 9 H -0.218 1.218 10 H -0.221 1.221 11 C 0.034 3.966 12 C -0.124 4.124 13 H 0.062 0.938 14 C -0.145 4.145 15 C -0.081 4.081 16 N -0.225 5.225 17 C -0.111 4.111 18 C -0.248 4.248 19 C -0.214 4.214 20 C -0.079 4.079 21 H 0.024 0.976 22 H 0.031 0.969 23 H 0.044 0.956 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.150 0.850 32 H 0.102 0.898 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.175 -15.283 1.419 15.906 hybrid contribution -0.443 1.030 -0.437 1.203 sum 3.732 -14.253 0.982 14.766 Atomic orbital electron populations 1.20526 0.82834 0.95469 0.97540 1.44144 1.02069 1.01619 1.85961 1.19561 0.98444 0.86788 1.34106 0.91309 1.25766 0.98582 1.01776 0.98726 1.70228 1.19952 1.27326 1.41074 0.85215 0.78108 0.80260 0.76957 1.19065 1.21788 1.22136 1.20950 0.95587 0.86814 0.93290 1.22595 0.95398 0.95742 0.98707 0.93807 1.22194 0.97606 0.96514 0.98166 1.22819 0.88480 0.96623 1.00227 1.64726 1.17893 1.10429 1.29444 1.23130 1.05523 0.86374 0.96058 1.23400 0.95233 1.02476 1.03681 1.23386 0.94645 1.03396 0.99974 1.23231 1.00112 0.94196 0.90315 0.97567 0.96875 0.95621 0.94453 0.93438 0.92681 0.92112 0.94353 0.92252 0.90877 0.85047 0.89837 0.86939 0.86555 0.88555 0.90109 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.10 7.73 127.77 0.99 10.09 16 2 N -0.62 -31.17 2.84 -726.92 -2.06 -33.23 16 3 C -0.26 -14.44 9.66 84.04 0.81 -13.63 16 4 H 0.07 3.75 7.85 -2.91 -0.02 3.72 16 5 C -0.05 -3.07 5.12 84.86 0.43 -2.63 16 6 N -0.94 -56.54 10.65 21.65 0.23 -56.31 16 7 Si 0.97 45.99 29.57 68.60 2.03 48.02 16 8 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 9 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 10 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 11 C 0.16 6.47 5.11 86.38 0.44 6.91 16 12 C -0.10 -3.90 3.31 -9.59 -0.03 -3.93 16 13 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 14 C -0.11 -3.91 5.56 31.47 0.17 -3.74 16 15 C 0.05 1.36 6.58 86.45 0.57 1.93 16 16 N -0.50 -14.48 5.54 -857.71 -4.75 -19.23 16 17 C 0.00 -0.04 6.33 44.94 0.28 0.25 16 18 C -0.21 -3.97 8.85 30.60 0.27 -3.70 16 19 C -0.18 -3.28 9.57 30.62 0.29 -2.99 16 20 C 0.05 1.47 4.51 86.65 0.39 1.86 16 21 H 0.01 0.33 7.22 -2.38 -0.02 0.31 16 22 H 0.01 0.69 7.23 -2.39 -0.02 0.68 16 23 H 0.03 1.09 7.85 -2.39 -0.02 1.07 16 24 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 25 H 0.05 1.87 8.03 -2.39 -0.02 1.85 16 26 H 0.05 1.99 7.80 -2.39 -0.02 1.97 16 27 H 0.06 2.20 7.18 -2.39 -0.02 2.18 16 28 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.06 1.56 6.72 -2.38 -0.02 1.54 16 30 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.08 1.80 7.19 -2.39 -0.02 1.78 16 33 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.10 1.92 6.10 -2.38 -0.01 1.91 16 36 H 0.08 2.33 8.06 -2.39 -0.02 2.31 16 37 H 0.06 1.59 5.67 -2.39 -0.01 1.58 16 Total: -1.00 -62.93 286.32 1.09 -61.83 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 1.02 Total: 8.50 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 4.63 Total: -9.58 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -6.58 Total: -108.77 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -62.93 1.09 -61.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260156109.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.811 kcal (2) G-P(sol) polarization free energy of solvation -62.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds