Wall clock time and date at job start Mon Mar 30 2020 02:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46848 * 111.00077 * 2 1 4 4 C 1.53045 * 109.52146 * 174.16172 * 3 2 1 5 5 C 1.53117 * 109.27814 * 59.18125 * 4 3 2 6 6 C 1.53113 * 109.16190 * 302.34438 * 5 4 3 7 7 C 1.50694 * 109.50281 * 297.71353 * 6 5 4 8 8 H 1.08008 * 120.00269 * 113.82250 * 7 6 5 9 9 C 1.37875 * 120.00154 * 294.09399 * 7 6 5 10 10 N 1.31513 * 119.99798 * 4.77296 * 9 7 6 11 11 Si 1.86800 * 120.00332 * 184.77165 * 9 7 6 12 12 H 1.48497 * 109.47268 * 59.99808 * 11 9 7 13 13 H 1.48499 * 109.47491 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47086 * 300.00053 * 11 9 7 15 15 N 1.46902 * 109.53746 * 177.61408 * 6 5 4 16 16 C 1.46898 * 111.00110 * 183.76615 * 15 6 5 17 17 C 1.52995 * 117.49721 * 219.03753 * 16 15 6 18 18 C 1.53002 * 117.49678 * 150.37438 * 16 15 6 19 19 C 1.46846 * 110.99898 * 235.79308 * 2 1 3 20 20 H 1.08998 * 109.47262 * 184.20851 * 1 2 3 21 21 H 1.09002 * 109.46863 * 304.20900 * 1 2 3 22 22 H 1.08999 * 109.47447 * 64.20325 * 1 2 3 23 23 H 1.09001 * 109.46818 * 294.17515 * 3 2 1 24 24 H 1.09002 * 109.46420 * 54.14865 * 3 2 1 25 25 H 1.09004 * 109.49881 * 179.12444 * 4 3 2 26 26 H 1.08997 * 109.50260 * 299.19462 * 4 3 2 27 27 H 1.08997 * 109.51957 * 182.43238 * 5 4 3 28 28 H 1.09004 * 109.52374 * 62.24978 * 5 4 3 29 29 H 0.97001 * 119.99714 * 180.02562 * 10 9 7 30 30 H 1.00902 * 111.00133 * 307.72129 * 15 6 5 31 31 H 1.09003 * 115.54948 * 4.70815 * 16 15 6 32 32 H 1.08999 * 117.50310 * 359.97438 * 17 16 15 33 33 H 1.09004 * 117.49916 * 145.02321 * 17 16 15 34 34 H 1.09000 * 117.49932 * 214.97171 * 18 16 15 35 35 H 1.08997 * 117.50022 * 359.97438 * 18 16 15 36 36 H 1.09004 * 109.46280 * 65.82337 * 19 2 1 37 37 H 1.09004 * 109.45644 * 305.84935 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5182 1.3341 0.1467 5 6 4.1188 0.5369 -1.0144 6 6 3.5181 -0.8714 -1.0209 7 6 3.8820 -1.5795 0.2585 8 1 3.1122 -1.8377 0.9707 9 6 5.1985 -1.8929 0.5226 10 7 6.1467 -1.4918 -0.2956 11 14 5.6352 -2.8871 2.0426 12 1 4.9574 -4.2070 1.9823 13 1 7.1056 -3.0873 2.0976 14 1 5.1898 -2.1569 3.2565 15 7 4.0459 -1.6253 -2.1660 16 6 3.4226 -2.9526 -2.2548 17 6 4.3166 -4.1273 -2.6566 18 6 3.2853 -3.5769 -3.6449 19 6 1.9952 -0.7707 -1.1338 20 1 -0.3634 -1.0249 0.0754 21 1 -0.3633 0.5778 0.8499 22 1 -0.3634 0.4472 -0.9252 23 1 1.7325 1.8609 -0.9376 24 1 1.5634 1.9257 0.8330 25 1 3.9099 2.3512 0.1311 26 1 3.7813 0.8574 1.0909 27 1 5.1997 0.4715 -0.8906 28 1 3.8886 1.0355 -1.9561 29 1 7.0729 -1.7126 -0.1100 30 1 3.9241 -1.1104 -3.0251 31 1 2.6281 -3.1480 -1.5346 32 1 5.3672 -3.9154 -2.8554 33 1 4.1100 -5.0958 -2.2010 34 1 2.4008 -4.1835 -3.8391 35 1 3.6571 -3.0026 -4.4935 36 1 1.7323 -0.2707 -2.0660 37 1 1.5633 -1.7715 -1.1242 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260481003.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:15 Heat of formation + Delta-G solvation = 43.120928 kcal Electronic energy + Delta-G solvation = -16801.846191 eV Core-core repulsion = 14387.176989 eV Total energy + Delta-G solvation = -2414.669202 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.60344 -36.37574 -33.78634 -31.38747 -31.13069 -27.33510 -25.92592 -24.82911 -22.21250 -21.54826 -21.08427 -19.62625 -18.63440 -15.86812 -15.37040 -14.65182 -14.45966 -14.15840 -14.04809 -13.68404 -13.08162 -12.38195 -12.22856 -11.99045 -11.62049 -11.46117 -11.37108 -11.15979 -10.75840 -10.73387 -10.51983 -10.06267 -9.92705 -9.72003 -9.55795 -9.23311 -9.12264 -8.71676 -8.13152 -7.51498 -6.72777 -5.67194 -3.76043 3.45516 3.49774 3.53979 4.61794 4.67184 4.77596 5.24750 5.60647 5.64679 5.74262 5.79551 5.86102 5.91183 5.95958 6.15909 6.20371 6.23602 6.26183 6.31085 6.35827 6.47261 6.63991 6.67272 6.80034 6.83554 6.96169 7.09046 7.34819 7.45262 7.78576 7.88358 7.94241 8.13699 8.42302 8.69653 8.97779 9.32516 9.88110 11.34451 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.019057 B = 0.014548 C = 0.010469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.898986 B = 1924.173852 C = 2673.917038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.520 5.520 3 C 0.064 3.936 4 C -0.102 4.102 5 C -0.100 4.100 6 C 0.250 3.750 7 C -0.494 4.494 8 H 0.058 0.942 9 C 0.087 3.913 10 N -0.849 5.849 11 Si 0.873 3.127 12 H -0.281 1.281 13 H -0.292 1.292 14 H -0.281 1.281 15 N -0.612 5.612 16 C 0.070 3.930 17 C -0.173 4.173 18 C -0.227 4.227 19 C 0.041 3.959 20 H 0.060 0.940 21 H 0.058 0.942 22 H 0.010 0.990 23 H 0.014 0.986 24 H 0.057 0.943 25 H 0.041 0.959 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.009 0.991 29 H 0.251 0.749 30 H 0.301 0.699 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.000 1.000 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.655 1.944 -2.706 7.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.244 5.244 3 C -0.064 4.064 4 C -0.140 4.140 5 C -0.139 4.139 6 C 0.161 3.839 7 C -0.533 4.533 8 H 0.077 0.923 9 C -0.118 4.118 10 N -0.485 5.485 11 Si 0.701 3.299 12 H -0.207 1.207 13 H -0.219 1.219 14 H -0.207 1.207 15 N -0.239 5.239 16 C -0.042 4.042 17 C -0.211 4.211 18 C -0.265 4.265 19 C -0.089 4.089 20 H 0.079 0.921 21 H 0.077 0.923 22 H 0.029 0.971 23 H 0.032 0.968 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.100 0.900 27 H 0.116 0.884 28 H 0.028 0.972 29 H 0.061 0.939 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.018 0.982 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.713 1.517 -1.972 6.231 hybrid contribution -0.929 -0.091 -0.311 0.984 sum -6.642 1.426 -2.283 7.167 Atomic orbital electron populations 1.22344 0.89596 1.01270 0.99045 1.61789 1.05013 1.13247 1.44386 1.22049 0.97439 0.88821 0.98102 1.21440 0.92404 0.98001 1.02167 1.21529 1.04069 0.94883 0.93371 1.18598 0.84254 0.90801 0.90293 1.20655 0.92269 1.38391 1.01987 0.92334 1.24825 0.96721 0.95227 0.95056 1.69990 0.99305 1.43784 1.35440 0.87013 0.76826 0.81329 0.84695 1.20708 1.21852 1.20698 1.60641 1.58074 1.00748 1.04397 1.22059 0.97630 0.91180 0.93283 1.22911 0.97082 0.98228 1.02894 1.23317 1.01644 1.06600 0.94983 1.23078 1.01267 0.96058 0.88507 0.92109 0.92294 0.97114 0.96826 0.92418 0.94035 0.90024 0.88431 0.97239 0.93926 0.88156 0.88683 0.88995 0.90529 0.90443 0.89861 0.98226 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.59 60.06 0.58 1.00 16 2 N -0.52 -10.24 4.41 -242.95 -1.07 -11.32 16 3 C 0.06 1.18 5.46 -3.83 -0.02 1.16 16 4 C -0.10 -2.08 5.84 -26.65 -0.16 -2.24 16 5 C -0.10 -2.27 4.87 -26.61 -0.13 -2.40 16 6 C 0.25 5.75 0.32 -132.67 -0.04 5.71 16 7 C -0.49 -12.81 5.75 -34.44 -0.20 -13.01 16 8 H 0.06 1.60 7.62 -52.48 -0.40 1.20 16 9 C 0.09 2.31 5.24 -17.82 -0.09 2.22 16 10 N -0.85 -23.31 10.91 55.43 0.60 -22.71 16 11 Si 0.87 21.32 29.54 -169.99 -5.02 16.30 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 N -0.61 -13.81 5.45 -94.13 -0.51 -14.32 16 16 C 0.07 1.46 5.01 -67.72 -0.34 1.12 16 17 C -0.17 -3.41 10.46 -26.69 -0.28 -3.69 16 18 C -0.23 -3.95 10.30 -26.69 -0.27 -4.23 16 19 C 0.04 0.85 3.93 -3.83 -0.02 0.83 16 20 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 21 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 22 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 23 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 1.86 7.36 -51.93 -0.38 1.48 16 27 H 0.10 2.51 6.33 -51.93 -0.33 2.18 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.30 6.39 8.60 -39.29 -0.34 6.06 16 31 H 0.10 2.08 5.97 -51.93 -0.31 1.77 16 32 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 33 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 37 H 0.06 1.28 6.20 -51.93 -0.32 0.96 16 LS Contribution 286.40 15.07 4.32 4.32 Total: -1.00 -27.01 286.40 -8.94 -35.95 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.28 Total: 5.29 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -0.97 Total: -13.52 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: -0.98 Total: -48.35 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.01 -8.94 -35.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260481003.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.073 kcal (2) G-P(sol) polarization free energy of solvation -27.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds