Wall clock time and date at job start Mon Mar 30 2020 03:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46835 * 111.57706 * 2 1 4 4 C 1.53430 * 107.04711 * 122.14936 * 3 2 1 5 5 H 1.08997 * 109.16165 * 268.74686 * 4 3 2 6 6 C 1.54118 * 103.25486 * 24.77931 * 4 3 2 7 7 H 1.08998 * 112.54116 * 201.91244 * 6 4 3 8 8 C 1.48020 * 111.00224 * 120.90979 * 2 1 3 9 9 N 1.45488 * 111.77332 * 75.46962 * 6 4 3 10 10 C 1.46898 * 111.35367 * 179.85326 * 9 6 4 11 11 C 1.46450 * 113.16615 * 53.99081 * 9 6 4 12 12 C 1.53346 * 108.67180 * 297.00250 * 11 9 6 13 13 C 1.51155 * 112.71830 * 147.19190 * 4 3 2 14 14 H 1.09000 * 109.14655 * 172.20554 * 13 4 3 15 15 C 1.50693 * 109.10871 * 53.01743 * 13 4 3 16 16 H 1.08008 * 120.00178 * 358.40977 * 15 13 4 17 17 C 1.37878 * 120.00487 * 178.41058 * 15 13 4 18 18 N 1.31518 * 119.99334 * 359.97438 * 17 15 13 19 19 Si 1.86793 * 120.00469 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47182 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47259 * 119.99908 * 19 17 15 22 22 H 1.48505 * 109.47293 * 240.00344 * 19 17 15 23 23 H 1.09002 * 109.47017 * 299.21416 * 1 2 3 24 24 H 1.08992 * 109.47253 * 59.21558 * 1 2 3 25 25 H 1.09004 * 109.47220 * 179.21742 * 1 2 3 26 26 H 1.09004 * 109.35881 * 2.96019 * 3 2 1 27 27 H 1.08995 * 110.23052 * 241.82805 * 3 2 1 28 28 H 1.09001 * 110.43245 * 94.31084 * 8 2 1 29 29 H 1.09002 * 110.53709 * 331.85898 * 8 2 1 30 30 H 1.09001 * 109.46553 * 289.00046 * 10 9 6 31 31 H 1.09000 * 109.47065 * 48.99600 * 10 9 6 32 32 H 1.08996 * 109.47493 * 169.00255 * 10 9 6 33 33 H 1.09002 * 109.63280 * 177.19474 * 11 9 6 34 34 H 1.08995 * 109.62694 * 56.80503 * 11 9 6 35 35 H 1.09003 * 109.74312 * 182.53771 * 12 11 9 36 36 H 1.08995 * 109.74862 * 303.21521 * 12 11 9 37 37 H 0.97005 * 119.99393 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0090 1.3655 0.0000 4 6 2.9003 1.4967 1.2420 5 1 2.3023 1.8691 2.0737 6 6 3.3193 0.0421 1.5315 7 1 3.6294 -0.1054 2.5660 8 6 1.9995 -0.7098 1.1856 9 7 4.3335 -0.4234 0.5980 10 6 4.7285 -1.8090 0.8844 11 6 5.5045 0.4539 0.5351 12 6 5.0622 1.8266 0.0141 13 6 4.0762 2.4205 1.0216 14 1 4.5877 2.5807 1.9707 15 6 3.5741 3.7427 0.5015 16 1 2.5187 3.8873 0.3232 17 6 4.4619 4.7679 0.2532 18 7 5.7470 4.5920 0.4708 19 14 3.8397 6.4067 -0.3922 20 1 2.3643 6.3482 -0.5508 21 1 4.1914 7.4829 0.5686 22 1 4.4684 6.6919 -1.7070 23 1 -0.3633 0.5016 0.8970 24 1 -0.3633 0.5259 -0.8828 25 1 -0.3634 -1.0276 -0.0140 26 1 1.1868 2.0792 0.0531 27 1 2.5966 1.5384 -0.9016 28 1 2.2076 -1.7521 0.9436 29 1 1.2963 -0.6459 2.0160 30 1 5.3074 -1.8383 1.8075 31 1 3.8365 -2.4255 0.9951 32 1 5.3347 -2.1911 0.0631 33 1 6.2459 0.0272 -0.1406 34 1 5.9354 0.5614 1.5305 35 1 5.9289 2.4806 -0.0824 36 1 4.5764 1.7136 -0.9550 37 1 6.3717 5.3132 0.2957 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260666316.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:46 Heat of formation + Delta-G solvation = 14.433179 kcal Electronic energy + Delta-G solvation = -16754.522600 eV Core-core repulsion = 14338.609404 eV Total energy + Delta-G solvation = -2415.913196 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.66379 -35.82568 -34.18510 -31.45049 -30.34937 -27.53548 -26.58254 -25.34287 -24.06264 -21.76077 -21.25171 -19.91621 -17.85403 -16.05749 -15.63383 -15.13242 -14.68210 -14.31891 -14.22863 -13.74950 -12.94711 -12.61539 -12.51342 -12.32233 -11.82788 -11.77056 -11.44631 -11.20282 -10.98251 -10.92410 -10.69946 -10.54597 -10.31051 -10.11288 -9.93874 -9.43345 -9.00853 -8.60244 -8.29384 -7.64266 -7.53158 -5.96676 -4.01875 3.30764 3.39202 3.42748 4.44918 4.48413 4.69072 5.13683 5.33729 5.40500 5.63061 5.66625 5.72499 5.83235 5.85227 5.93713 6.03811 6.10831 6.12640 6.23784 6.31681 6.37153 6.52449 6.62403 6.67239 6.85860 7.07520 7.33307 7.46363 7.53990 7.67990 7.72074 7.84728 7.91621 8.06270 8.19141 8.46814 9.01031 9.62516 11.09302 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.030181 B = 0.010293 C = 0.008141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.513733 B = 2719.736058 C = 3438.588595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.527 5.527 3 C 0.073 3.927 4 C -0.082 4.082 5 H 0.052 0.948 6 C 0.081 3.919 7 H 0.045 0.955 8 C 0.050 3.950 9 N -0.530 5.530 10 C 0.029 3.971 11 C 0.060 3.940 12 C -0.101 4.101 13 C 0.057 3.943 14 H 0.021 0.979 15 C -0.507 4.507 16 H 0.055 0.945 17 C 0.061 3.939 18 N -0.890 5.890 19 Si 0.888 3.112 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.284 1.284 23 H 0.019 0.981 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.040 0.960 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.013 0.987 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.019 0.981 35 H 0.093 0.907 36 H 0.048 0.952 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.579 -9.367 1.144 10.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.251 5.251 3 C -0.054 4.054 4 C -0.102 4.102 5 H 0.071 0.929 6 C -0.028 4.028 7 H 0.062 0.938 8 C -0.078 4.078 9 N -0.255 5.255 10 C -0.119 4.119 11 C -0.067 4.067 12 C -0.139 4.139 13 C 0.038 3.962 14 H 0.040 0.960 15 C -0.545 4.545 16 H 0.074 0.926 17 C -0.139 4.139 18 N -0.530 5.530 19 Si 0.716 3.284 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.211 1.211 23 H 0.037 0.963 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.032 0.968 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.038 0.962 35 H 0.111 0.889 36 H 0.067 0.933 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.488 -9.497 0.230 10.507 hybrid contribution -0.217 1.311 1.256 1.829 sum -4.706 -8.186 1.486 9.558 Atomic orbital electron populations 1.22494 0.89243 1.00807 1.00063 1.63309 1.05943 1.16535 1.39344 1.22391 0.96703 0.86224 1.00042 1.21701 0.98941 0.92712 0.96827 0.92922 1.22476 0.91232 0.96449 0.92682 0.93778 1.23334 0.94807 0.98595 0.91061 1.60695 1.12627 1.01348 1.50802 1.22326 0.99763 0.91008 0.98828 1.22218 0.90513 0.95527 0.98456 1.21696 1.01939 0.91506 0.98777 1.18187 0.90419 0.92123 0.95480 0.96048 1.21214 0.93491 0.96531 1.43308 0.92641 1.24951 0.94913 0.98491 0.95593 1.69889 1.01510 1.32366 1.49207 0.86597 0.79006 0.84189 0.78564 1.19873 1.21238 1.21056 0.96295 0.91829 0.92360 0.94172 0.89479 0.90775 0.94636 0.96814 0.91992 0.92006 0.92547 0.96249 0.88867 0.93287 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.16 60.06 0.55 0.88 16 2 N -0.53 -9.34 5.41 -239.88 -1.30 -10.64 16 3 C 0.07 1.48 5.17 -3.64 -0.02 1.46 16 4 C -0.08 -1.73 2.37 -90.74 -0.22 -1.94 16 5 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 6 C 0.08 1.49 2.96 -66.41 -0.20 1.30 16 7 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 8 C 0.05 0.82 6.12 -1.72 -0.01 0.81 16 9 N -0.53 -9.78 4.27 -233.65 -1.00 -10.78 16 10 C 0.03 0.43 9.49 60.06 0.57 1.00 16 11 C 0.06 1.20 5.49 -3.89 -0.02 1.18 16 12 C -0.10 -2.38 4.98 -26.57 -0.13 -2.51 16 13 C 0.06 1.39 1.91 -92.72 -0.18 1.21 16 14 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 15 C -0.51 -13.55 7.94 -34.44 -0.27 -13.83 16 16 H 0.06 1.48 6.98 -52.48 -0.37 1.11 16 17 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 18 N -0.89 -25.05 11.34 55.43 0.63 -24.42 16 19 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H 0.02 0.27 8.09 -51.93 -0.42 -0.15 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.81 7.32 -51.93 -0.38 0.43 16 27 H 0.09 1.97 6.50 -51.93 -0.34 1.63 16 28 H 0.07 1.14 6.07 -51.93 -0.31 0.82 16 29 H 0.04 0.54 7.80 -51.93 -0.40 0.14 16 30 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.84 6.06 -51.93 -0.31 0.52 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 36 H 0.05 1.19 6.84 -51.93 -0.36 0.84 16 37 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 276.10 15.07 4.16 4.16 Total: -1.00 -27.62 276.10 -8.70 -36.32 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -6.15 Total: -1.94 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -0.02 Total: -8.85 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: -1.67 Total: -45.84 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.62 -8.70 -36.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260666316.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.749 kcal (2) G-P(sol) polarization free energy of solvation -27.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds