Wall clock time and date at job start Mon Mar 30 2020 03:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46835 * 111.57706 * 2 1 4 4 C 1.53430 * 107.04711 * 122.14936 * 3 2 1 5 5 H 1.08997 * 109.16165 * 268.74686 * 4 3 2 6 6 C 1.54118 * 103.25486 * 24.77931 * 4 3 2 7 7 H 1.08998 * 112.54116 * 201.91244 * 6 4 3 8 8 C 1.48020 * 111.00224 * 120.90979 * 2 1 3 9 9 N 1.45488 * 111.77332 * 75.46962 * 6 4 3 10 10 C 1.46898 * 111.35367 * 179.85326 * 9 6 4 11 11 C 1.46450 * 113.16615 * 53.99081 * 9 6 4 12 12 C 1.53346 * 108.67180 * 297.00250 * 11 9 6 13 13 C 1.51155 * 112.71830 * 147.19190 * 4 3 2 14 14 H 1.09000 * 109.14655 * 172.20554 * 13 4 3 15 15 C 1.50693 * 109.10871 * 53.01743 * 13 4 3 16 16 H 1.08008 * 120.00178 * 358.40977 * 15 13 4 17 17 C 1.37878 * 120.00487 * 178.41058 * 15 13 4 18 18 N 1.31518 * 119.99334 * 359.97438 * 17 15 13 19 19 Si 1.86793 * 120.00469 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47182 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47259 * 119.99908 * 19 17 15 22 22 H 1.48505 * 109.47293 * 240.00344 * 19 17 15 23 23 H 1.09002 * 109.47017 * 299.21416 * 1 2 3 24 24 H 1.08992 * 109.47253 * 59.21558 * 1 2 3 25 25 H 1.09004 * 109.47220 * 179.21742 * 1 2 3 26 26 H 1.09004 * 109.35881 * 2.96019 * 3 2 1 27 27 H 1.08995 * 110.23052 * 241.82805 * 3 2 1 28 28 H 1.09001 * 110.43245 * 94.31084 * 8 2 1 29 29 H 1.09002 * 110.53709 * 331.85898 * 8 2 1 30 30 H 1.09001 * 109.46553 * 289.00046 * 10 9 6 31 31 H 1.09000 * 109.47065 * 48.99600 * 10 9 6 32 32 H 1.08996 * 109.47493 * 169.00255 * 10 9 6 33 33 H 1.09002 * 109.63280 * 177.19474 * 11 9 6 34 34 H 1.08995 * 109.62694 * 56.80503 * 11 9 6 35 35 H 1.09003 * 109.74312 * 182.53771 * 12 11 9 36 36 H 1.08995 * 109.74862 * 303.21521 * 12 11 9 37 37 H 0.97005 * 119.99393 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0090 1.3655 0.0000 4 6 2.9003 1.4967 1.2420 5 1 2.3023 1.8691 2.0737 6 6 3.3193 0.0421 1.5315 7 1 3.6294 -0.1054 2.5660 8 6 1.9995 -0.7098 1.1856 9 7 4.3335 -0.4234 0.5980 10 6 4.7285 -1.8090 0.8844 11 6 5.5045 0.4539 0.5351 12 6 5.0622 1.8266 0.0141 13 6 4.0762 2.4205 1.0216 14 1 4.5877 2.5807 1.9707 15 6 3.5741 3.7427 0.5015 16 1 2.5187 3.8873 0.3232 17 6 4.4619 4.7679 0.2532 18 7 5.7470 4.5920 0.4708 19 14 3.8397 6.4067 -0.3922 20 1 2.3643 6.3482 -0.5508 21 1 4.1914 7.4829 0.5686 22 1 4.4684 6.6919 -1.7070 23 1 -0.3633 0.5016 0.8970 24 1 -0.3633 0.5259 -0.8828 25 1 -0.3634 -1.0276 -0.0140 26 1 1.1868 2.0792 0.0531 27 1 2.5966 1.5384 -0.9016 28 1 2.2076 -1.7521 0.9436 29 1 1.2963 -0.6459 2.0160 30 1 5.3074 -1.8383 1.8075 31 1 3.8365 -2.4255 0.9951 32 1 5.3347 -2.1911 0.0631 33 1 6.2459 0.0272 -0.1406 34 1 5.9354 0.5614 1.5305 35 1 5.9289 2.4806 -0.0824 36 1 4.5764 1.7136 -0.9550 37 1 6.3717 5.3132 0.2957 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260666316.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:45 Heat of formation + Delta-G solvation = -4.452398 kcal Electronic energy + Delta-G solvation = -16755.341540 eV Core-core repulsion = 14338.609404 eV Total energy + Delta-G solvation = -2416.732137 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.20859 -37.29604 -35.99804 -33.34952 -31.88366 -29.04113 -28.31059 -26.67652 -25.79175 -23.38019 -22.93286 -21.39111 -19.57235 -18.10669 -17.19245 -16.74415 -16.17938 -16.06932 -15.68642 -15.20434 -14.49383 -14.24233 -14.11031 -13.86004 -13.31297 -13.19517 -12.93820 -12.86233 -12.78218 -12.57516 -12.18865 -12.09672 -12.04971 -11.90094 -11.68776 -11.31883 -10.80913 -10.54465 -10.34412 -9.05816 -8.97159 -8.05992 -6.18097 1.39536 1.42225 1.52483 2.44289 3.06883 3.20385 3.32425 3.70383 3.93814 4.16620 4.32003 4.44409 4.51634 4.55979 4.62518 4.65237 4.74685 4.75572 4.83397 4.89833 4.98374 5.01213 5.05333 5.08489 5.19255 5.24214 5.50746 5.56550 5.68201 5.98726 6.06008 6.16417 6.32161 6.39787 6.44246 6.50750 6.91916 7.49069 8.98691 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.030181 B = 0.010293 C = 0.008141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.513733 B = 2719.736058 C = 3438.588595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.537 5.537 3 C 0.087 3.913 4 C -0.085 4.085 5 H 0.046 0.954 6 C 0.080 3.920 7 H 0.049 0.951 8 C 0.059 3.941 9 N -0.540 5.540 10 C 0.030 3.970 11 C 0.070 3.930 12 C -0.091 4.091 13 C 0.059 3.941 14 H -0.015 1.015 15 C -0.521 4.521 16 H 0.052 0.948 17 C 0.013 3.987 18 N -0.917 5.917 19 Si 0.949 3.051 20 H -0.268 1.268 21 H -0.283 1.283 22 H -0.281 1.281 23 H 0.022 0.978 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.035 0.965 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.021 0.979 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.011 0.989 35 H 0.062 0.938 36 H 0.034 0.966 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.846 -10.972 1.102 12.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.261 5.261 3 C -0.040 4.040 4 C -0.105 4.105 5 H 0.065 0.935 6 C -0.029 4.029 7 H 0.067 0.933 8 C -0.069 4.069 9 N -0.265 5.265 10 C -0.117 4.117 11 C -0.057 4.057 12 C -0.129 4.129 13 C 0.040 3.960 14 H 0.003 0.997 15 C -0.559 4.559 16 H 0.070 0.930 17 C -0.185 4.185 18 N -0.557 5.557 19 Si 0.775 3.225 20 H -0.193 1.193 21 H -0.209 1.209 22 H -0.207 1.207 23 H 0.041 0.959 24 H 0.084 0.916 25 H 0.102 0.898 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.112 0.888 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.029 0.971 35 H 0.080 0.920 36 H 0.053 0.947 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.771 -11.123 0.192 12.533 hybrid contribution 0.173 1.794 1.282 2.212 sum -5.598 -9.329 1.474 10.979 Atomic orbital electron populations 1.22570 0.87081 1.02574 1.00368 1.63265 1.07993 1.14566 1.40313 1.22070 0.95976 0.88011 0.97989 1.21584 0.97670 0.94057 0.97188 0.93516 1.22475 0.92655 0.94759 0.93014 0.93301 1.23341 0.93543 0.98851 0.91116 1.60673 1.11807 1.02779 1.51247 1.22408 1.01038 0.88648 0.99652 1.21998 0.91566 0.94073 0.98091 1.21428 1.00225 0.93316 0.97924 1.18091 0.91711 0.92562 0.93645 0.99699 1.21522 0.93349 0.97854 1.43155 0.93025 1.25685 0.95121 1.01744 0.95982 1.70024 1.02422 1.33226 1.50023 0.85644 0.78660 0.80252 0.77932 1.19275 1.20904 1.20740 0.95934 0.91648 0.89801 0.94691 0.92485 0.88817 0.92883 0.96069 0.89998 0.90881 0.90895 0.97061 0.91974 0.94709 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.16 127.69 1.17 1.76 16 2 N -0.54 -17.79 5.41 -912.85 -4.94 -22.73 16 3 C 0.09 3.50 5.17 86.46 0.45 3.95 16 4 C -0.09 -3.60 2.37 -10.87 -0.03 -3.63 16 5 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 6 C 0.08 2.83 2.96 46.52 0.14 2.97 16 7 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 8 C 0.06 1.74 6.12 87.05 0.53 2.28 16 9 N -0.54 -19.01 4.27 -893.13 -3.81 -22.82 16 10 C 0.03 0.79 9.49 127.69 1.21 2.01 16 11 C 0.07 2.80 5.49 86.50 0.48 3.28 16 12 C -0.09 -4.40 4.98 30.70 0.15 -4.25 16 13 C 0.06 2.98 1.91 -12.15 -0.02 2.96 16 14 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 15 C -0.52 -28.65 7.94 25.60 0.20 -28.45 16 16 H 0.05 2.81 6.98 -2.91 -0.02 2.79 16 17 C 0.01 0.72 5.30 84.65 0.45 1.17 16 18 N -0.92 -53.19 11.34 21.45 0.24 -52.95 16 19 Si 0.95 44.10 29.54 68.60 2.03 46.13 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 23 H 0.02 0.58 8.09 -2.39 -0.02 0.56 16 24 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.03 1.40 7.32 -2.39 -0.02 1.38 16 27 H 0.06 2.63 6.50 -2.39 -0.02 2.61 16 28 H 0.09 2.44 6.07 -2.39 -0.01 2.42 16 29 H 0.05 1.40 7.80 -2.39 -0.02 1.38 16 30 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.08 1.86 6.06 -2.39 -0.01 1.85 16 32 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 2.64 8.09 -2.39 -0.02 2.62 16 34 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.06 3.39 6.15 -2.39 -0.01 3.38 16 36 H 0.03 1.75 6.84 -2.39 -0.02 1.73 16 37 H 0.26 14.31 8.31 -92.70 -0.77 13.54 16 Total: -1.00 -60.23 276.10 -0.72 -60.96 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 1.02 Total: 7.37 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 4.73 Total: -15.96 kcal Atomic # 7 Polarization: -89.99 SS G_CDS: -8.50 Total: -98.49 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -60.23 -0.72 -60.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260666316.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.507 kcal (2) G-P(sol) polarization free energy of solvation -60.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds