Wall clock time and date at job start Mon Mar 30 2020 02:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46863 * 110.99694 * 2 1 4 4 C 1.53136 * 109.44905 * 186.33394 * 3 2 1 5 5 C 1.52576 * 109.31427 * 301.68405 * 4 3 2 6 6 C 1.54156 * 109.98434 * 294.81913 * 5 4 3 7 7 C 1.55030 * 102.80240 * 219.20171 * 6 5 4 8 8 N 1.48575 * 103.29082 * 37.03453 * 7 6 5 9 9 C 1.48032 * 105.83588 * 321.06912 * 8 7 6 10 10 H 1.08998 * 109.97659 * 265.82589 * 9 8 7 11 11 C 1.50702 * 109.97963 * 144.58152 * 9 8 7 12 12 H 1.08002 * 120.00299 * 241.45604 * 11 9 8 13 13 C 1.37884 * 119.99942 * 61.17162 * 11 9 8 14 14 N 1.31514 * 119.99985 * 180.27663 * 13 11 9 15 15 Si 1.86800 * 119.99777 * 0.28166 * 13 11 9 16 16 H 1.48498 * 109.47109 * 89.99834 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99574 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99405 * 15 13 11 19 19 C 1.52580 * 110.42726 * 56.38018 * 5 4 3 20 20 C 1.46848 * 111.00215 * 124.35140 * 2 1 3 21 21 H 1.09002 * 109.47684 * 60.00229 * 1 2 3 22 22 H 1.09008 * 109.47141 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47243 * 299.99931 * 1 2 3 24 24 H 1.08997 * 109.47119 * 66.34055 * 3 2 1 25 25 H 1.08995 * 109.47417 * 306.32752 * 3 2 1 26 26 H 1.09006 * 109.49576 * 181.73953 * 4 3 2 27 27 H 1.09001 * 109.50272 * 61.64078 * 4 3 2 28 28 H 1.08992 * 110.74750 * 100.87229 * 6 5 4 29 29 H 1.08997 * 110.90074 * 337.60029 * 6 5 4 30 30 H 1.08997 * 110.66027 * 278.58533 * 7 6 5 31 31 H 1.08997 * 110.79760 * 155.54895 * 7 6 5 32 32 H 1.00907 * 111.00131 * 81.58616 * 8 7 6 33 33 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 34 34 H 1.09002 * 109.49631 * 63.58035 * 19 5 4 35 35 H 1.09001 * 109.49930 * 183.67525 * 19 5 4 36 36 H 1.09003 * 109.47264 * 293.67125 * 20 2 1 37 37 H 1.08997 * 109.47280 * 53.67411 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3711 0.0000 4 6 3.5178 1.3329 -0.1593 5 6 4.1239 0.5164 0.9782 6 6 3.8806 1.2269 2.3245 7 6 5.2133 0.9942 3.0815 8 7 6.2373 1.0972 2.0099 9 6 5.6491 0.4347 0.8240 10 1 5.9648 -0.6078 0.7850 11 6 6.0787 1.1497 -0.4312 12 1 5.3392 1.6049 -1.0733 13 6 7.4163 1.2276 -0.7567 14 7 7.7916 1.8562 -1.8493 15 14 8.6952 0.4403 0.3540 16 1 8.9276 -0.9622 -0.0753 17 1 9.9664 1.2028 0.2632 18 1 8.2086 0.4545 1.7569 19 6 3.5178 -0.8835 1.0106 20 6 1.9953 -0.7736 1.1318 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.7404 1.8581 0.9413 25 1 1.5571 1.9285 -0.8279 26 1 3.9124 2.3486 -0.1284 27 1 3.7724 0.8721 -1.1137 28 1 3.0482 0.7684 2.8582 29 1 3.7021 2.2918 2.1755 30 1 5.2300 0.0032 3.5351 31 1 5.3688 1.7642 3.8371 32 1 6.4585 2.0618 1.8127 33 1 8.7325 1.9107 -2.0785 34 1 3.7725 -1.4115 0.0916 35 1 3.9124 -1.4311 1.8665 36 1 1.7403 -0.2714 2.0651 37 1 1.5572 -1.7716 1.1248 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260795932.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:10 Heat of formation + Delta-G solvation = 16.637604 kcal Electronic energy + Delta-G solvation = -16767.991308 eV Core-core repulsion = 14352.173703 eV Total energy + Delta-G solvation = -2415.817605 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.76061 -36.64450 -32.47018 -32.10307 -30.53169 -29.02229 -27.03718 -24.62961 -23.17187 -22.67346 -21.49285 -19.95794 -17.61932 -16.52527 -15.62993 -15.04005 -14.70308 -14.52924 -14.01924 -13.65097 -13.31082 -12.95319 -12.63399 -12.42328 -12.02678 -11.87336 -11.65884 -11.45852 -11.05986 -10.74675 -10.64628 -10.53793 -10.37958 -9.83527 -9.63260 -9.42641 -9.37899 -8.83788 -8.48056 -7.99782 -7.18345 -5.98601 -4.06345 3.50299 3.59343 3.91131 4.22990 4.67688 5.14059 5.20180 5.25637 5.39025 5.44811 5.52705 5.54181 5.61331 5.81668 5.86552 5.91071 5.92745 5.98706 6.06469 6.13282 6.21801 6.31472 6.39041 6.53710 6.63300 6.76802 6.86317 6.97144 7.19720 7.34907 7.40191 7.45214 7.68590 8.04445 8.31269 8.76224 9.03865 9.64985 11.10215 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.036701 B = 0.009769 C = 0.008696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.740012 B = 2865.404185 C = 3219.092052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.540 5.540 3 C 0.052 3.948 4 C -0.083 4.083 5 C -0.067 4.067 6 C -0.147 4.147 7 C 0.036 3.964 8 N -0.674 5.674 9 C 0.178 3.822 10 H 0.041 0.959 11 C -0.541 4.541 12 H 0.091 0.909 13 C 0.080 3.920 14 N -0.899 5.899 15 Si 0.843 3.157 16 H -0.291 1.291 17 H -0.302 1.302 18 H -0.191 1.191 19 C -0.099 4.099 20 C 0.059 3.941 21 H 0.064 0.936 22 H 0.062 0.938 23 H 0.017 0.983 24 H 0.024 0.976 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.335 0.665 33 H 0.262 0.738 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.028 0.972 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.248 -2.526 7.471 13.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.265 5.265 3 C -0.076 4.076 4 C -0.121 4.121 5 C -0.069 4.069 6 C -0.186 4.186 7 C -0.094 4.094 8 N -0.304 5.304 9 C 0.071 3.929 10 H 0.058 0.942 11 C -0.579 4.579 12 H 0.108 0.892 13 C -0.124 4.124 14 N -0.536 5.536 15 Si 0.670 3.330 16 H -0.218 1.218 17 H -0.229 1.229 18 H -0.112 1.112 19 C -0.137 4.137 20 C -0.069 4.069 21 H 0.083 0.917 22 H 0.081 0.919 23 H 0.036 0.964 24 H 0.042 0.958 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.152 0.848 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.046 0.954 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.496 -3.248 7.177 13.123 hybrid contribution -0.261 0.664 0.764 1.045 sum -10.756 -2.584 7.941 13.617 Atomic orbital electron populations 1.22327 0.88435 1.01371 1.00074 1.61879 1.06422 1.14597 1.43618 1.22337 0.98088 0.88004 0.99157 1.21599 0.90093 1.00550 0.99830 1.21277 0.98443 0.93665 0.93467 1.23205 0.98542 0.99859 0.97018 1.23048 0.90648 1.00077 0.95631 1.63787 1.37701 1.21034 1.07851 1.20190 0.87396 0.95963 0.89390 0.94154 1.21573 0.93625 1.36304 1.06364 0.89174 1.25071 0.98877 0.93872 0.94559 1.69938 1.16637 1.42278 1.24795 0.87475 0.79784 0.78480 0.87310 1.21759 1.22923 1.11225 1.21530 0.92758 0.97505 1.01897 1.22154 0.96658 0.97069 0.91044 0.91708 0.91900 0.96406 0.95812 0.91690 0.91158 0.90042 0.92780 0.92355 0.91936 0.92764 0.84803 0.92880 0.91008 0.92288 0.95361 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.59 60.06 0.58 0.90 16 2 N -0.54 -8.32 4.90 -242.82 -1.19 -9.51 16 3 C 0.05 0.83 5.29 -3.77 -0.02 0.81 16 4 C -0.08 -1.60 3.22 -26.88 -0.09 -1.68 16 5 C -0.07 -1.26 0.63 -154.07 -0.10 -1.35 16 6 C -0.15 -2.46 5.01 -25.05 -0.13 -2.59 16 7 C 0.04 0.62 7.56 -1.82 -0.01 0.61 16 8 N -0.67 -14.21 4.28 -104.42 -0.45 -14.65 16 9 C 0.18 4.00 2.36 -67.97 -0.16 3.84 16 10 H 0.04 0.98 7.12 -51.93 -0.37 0.61 16 11 C -0.54 -14.35 8.09 -34.44 -0.28 -14.63 16 12 H 0.09 2.54 4.93 -52.49 -0.26 2.28 16 13 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 14 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 15 Si 0.84 21.04 26.87 -169.99 -4.57 16.47 16 16 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 17 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 18 H -0.19 -4.48 5.23 56.52 0.30 -4.18 16 19 C -0.10 -1.69 4.62 -26.88 -0.12 -1.81 16 20 C 0.06 0.87 5.27 -3.78 -0.02 0.85 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.06 0.69 8.09 -51.92 -0.42 0.27 16 23 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 24 H 0.02 0.37 7.42 -51.93 -0.39 -0.01 16 25 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 26 H 0.07 1.45 7.27 -51.93 -0.38 1.07 16 27 H 0.08 1.79 6.90 -51.93 -0.36 1.43 16 28 H 0.05 0.83 6.13 -51.93 -0.32 0.51 16 29 H 0.06 0.99 7.76 -51.93 -0.40 0.59 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.33 7.31 8.24 -39.29 -0.32 6.99 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.03 0.41 6.44 -51.93 -0.33 0.08 16 37 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 LS Contribution 270.21 15.07 4.07 4.07 Total: -1.00 -28.96 270.21 -7.97 -36.94 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -6.17 Total: 6.04 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -0.45 Total: -12.90 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.86 Total: -50.62 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.57 Total: 16.47 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.96 -7.97 -36.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260795932.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.574 kcal (2) G-P(sol) polarization free energy of solvation -28.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds