Wall clock time and date at job start Mon Mar 30 2020 02:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46863 * 110.99694 * 2 1 4 4 C 1.53136 * 109.44905 * 186.33394 * 3 2 1 5 5 C 1.52576 * 109.31427 * 301.68405 * 4 3 2 6 6 C 1.54156 * 109.98434 * 294.81913 * 5 4 3 7 7 C 1.55030 * 102.80240 * 219.20171 * 6 5 4 8 8 N 1.48575 * 103.29082 * 37.03453 * 7 6 5 9 9 C 1.48032 * 105.83588 * 321.06912 * 8 7 6 10 10 H 1.08998 * 109.97659 * 265.82589 * 9 8 7 11 11 C 1.50702 * 109.97963 * 144.58152 * 9 8 7 12 12 H 1.08002 * 120.00299 * 241.45604 * 11 9 8 13 13 C 1.37884 * 119.99942 * 61.17162 * 11 9 8 14 14 N 1.31514 * 119.99985 * 180.27663 * 13 11 9 15 15 Si 1.86800 * 119.99777 * 0.28166 * 13 11 9 16 16 H 1.48498 * 109.47109 * 89.99834 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99574 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99405 * 15 13 11 19 19 C 1.52580 * 110.42726 * 56.38018 * 5 4 3 20 20 C 1.46848 * 111.00215 * 124.35140 * 2 1 3 21 21 H 1.09002 * 109.47684 * 60.00229 * 1 2 3 22 22 H 1.09008 * 109.47141 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47243 * 299.99931 * 1 2 3 24 24 H 1.08997 * 109.47119 * 66.34055 * 3 2 1 25 25 H 1.08995 * 109.47417 * 306.32752 * 3 2 1 26 26 H 1.09006 * 109.49576 * 181.73953 * 4 3 2 27 27 H 1.09001 * 109.50272 * 61.64078 * 4 3 2 28 28 H 1.08992 * 110.74750 * 100.87229 * 6 5 4 29 29 H 1.08997 * 110.90074 * 337.60029 * 6 5 4 30 30 H 1.08997 * 110.66027 * 278.58533 * 7 6 5 31 31 H 1.08997 * 110.79760 * 155.54895 * 7 6 5 32 32 H 1.00907 * 111.00131 * 81.58616 * 8 7 6 33 33 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 34 34 H 1.09002 * 109.49631 * 63.58035 * 19 5 4 35 35 H 1.09001 * 109.49930 * 183.67525 * 19 5 4 36 36 H 1.09003 * 109.47264 * 293.67125 * 20 2 1 37 37 H 1.08997 * 109.47280 * 53.67411 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3711 0.0000 4 6 3.5178 1.3329 -0.1593 5 6 4.1239 0.5164 0.9782 6 6 3.8806 1.2269 2.3245 7 6 5.2133 0.9942 3.0815 8 7 6.2373 1.0972 2.0099 9 6 5.6491 0.4347 0.8240 10 1 5.9648 -0.6078 0.7850 11 6 6.0787 1.1497 -0.4312 12 1 5.3392 1.6049 -1.0733 13 6 7.4163 1.2276 -0.7567 14 7 7.7916 1.8562 -1.8493 15 14 8.6952 0.4403 0.3540 16 1 8.9276 -0.9622 -0.0753 17 1 9.9664 1.2028 0.2632 18 1 8.2086 0.4545 1.7569 19 6 3.5178 -0.8835 1.0106 20 6 1.9953 -0.7736 1.1318 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.7404 1.8581 0.9413 25 1 1.5571 1.9285 -0.8279 26 1 3.9124 2.3486 -0.1284 27 1 3.7724 0.8721 -1.1137 28 1 3.0482 0.7684 2.8582 29 1 3.7021 2.2918 2.1755 30 1 5.2300 0.0032 3.5351 31 1 5.3688 1.7642 3.8371 32 1 6.4585 2.0618 1.8127 33 1 8.7325 1.9107 -2.0785 34 1 3.7725 -1.4115 0.0916 35 1 3.9124 -1.4311 1.8665 36 1 1.7403 -0.2714 2.0651 37 1 1.5572 -1.7716 1.1248 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260795932.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:10 Heat of formation + Delta-G solvation = -4.183213 kcal Electronic energy + Delta-G solvation = -16768.894167 eV Core-core repulsion = 14352.173703 eV Total energy + Delta-G solvation = -2416.720464 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.21921 -38.01256 -34.55355 -33.51352 -31.92794 -30.74550 -28.33048 -26.30013 -24.61733 -24.10951 -22.87518 -21.53583 -19.25450 -18.35294 -17.15800 -16.48616 -16.15865 -15.80605 -15.53796 -15.22267 -14.86511 -14.59852 -14.33053 -13.87408 -13.34361 -13.18254 -13.12282 -12.85621 -12.73010 -12.41599 -12.16796 -12.03860 -11.79971 -11.48542 -11.35898 -11.11084 -10.98093 -10.70401 -10.56012 -9.14344 -8.88873 -8.18838 -6.27771 1.47145 1.53275 1.89761 2.57588 3.08387 3.16071 3.76313 3.89657 3.91192 4.11531 4.28674 4.32257 4.42392 4.50426 4.61315 4.67280 4.69109 4.73733 4.76028 4.92290 4.97161 5.00513 5.03085 5.07252 5.25400 5.28136 5.34560 5.42753 5.55705 5.68708 5.77840 6.20952 6.23369 6.27958 6.37620 6.85594 6.92328 7.46184 8.92946 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.036701 B = 0.009769 C = 0.008696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.740012 B = 2865.404185 C = 3219.092052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.562 5.562 3 C 0.063 3.937 4 C -0.074 4.074 5 C -0.068 4.068 6 C -0.135 4.135 7 C 0.038 3.962 8 N -0.685 5.685 9 C 0.179 3.821 10 H 0.026 0.974 11 C -0.530 4.530 12 H 0.062 0.938 13 C 0.022 3.978 14 N -0.950 5.950 15 Si 0.905 3.095 16 H -0.301 1.301 17 H -0.312 1.312 18 H -0.162 1.162 19 C -0.097 4.097 20 C 0.064 3.936 21 H 0.068 0.932 22 H 0.077 0.923 23 H 0.029 0.971 24 H 0.037 0.963 25 H 0.068 0.932 26 H 0.045 0.955 27 H 0.040 0.960 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.330 0.670 33 H 0.259 0.741 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.042 0.958 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.122 -3.374 10.315 17.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.287 5.287 3 C -0.065 4.065 4 C -0.112 4.112 5 C -0.070 4.070 6 C -0.174 4.174 7 C -0.091 4.091 8 N -0.313 5.313 9 C 0.071 3.929 10 H 0.044 0.956 11 C -0.568 4.568 12 H 0.080 0.920 13 C -0.176 4.176 14 N -0.590 5.590 15 Si 0.731 3.269 16 H -0.229 1.229 17 H -0.240 1.240 18 H -0.083 1.083 19 C -0.135 4.135 20 C -0.063 4.063 21 H 0.087 0.913 22 H 0.096 0.904 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.146 0.854 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.403 -4.105 10.047 16.481 hybrid contribution 0.244 0.932 -0.179 0.980 sum -12.159 -3.173 9.868 15.978 Atomic orbital electron populations 1.22376 0.86089 1.02671 1.00868 1.61820 1.08595 1.13846 1.44434 1.22129 0.95260 0.89112 0.99992 1.21360 0.93022 0.98684 0.98181 1.21233 0.95802 0.95320 0.94639 1.23093 0.99293 0.99630 0.95338 1.23169 0.89392 1.01763 0.94817 1.63547 1.39390 1.20461 1.07950 1.20050 0.90257 0.94387 0.88206 0.95636 1.21902 0.92787 1.34710 1.07436 0.92013 1.25863 1.01163 0.94763 0.95791 1.70080 1.16742 1.45070 1.27145 0.86594 0.76854 0.76406 0.87083 1.22904 1.24014 1.08256 1.21482 0.94889 0.95819 1.01276 1.22121 0.94589 0.98284 0.91325 0.91300 0.90384 0.95202 0.94462 0.91320 0.93644 0.94136 0.90120 0.92574 0.90620 0.90331 0.85435 0.93218 0.93495 0.90911 0.93948 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.59 127.69 1.22 1.81 16 2 N -0.56 -15.88 4.90 -922.15 -4.51 -20.39 16 3 C 0.06 1.93 5.29 86.36 0.46 2.38 16 4 C -0.07 -2.91 3.22 30.50 0.10 -2.81 16 5 C -0.07 -2.48 0.63 -51.90 -0.03 -2.51 16 6 C -0.13 -4.05 5.01 31.68 0.16 -3.90 16 7 C 0.04 1.17 7.56 86.67 0.65 1.82 16 8 N -0.68 -27.52 4.28 -484.29 -2.07 -29.59 16 9 C 0.18 8.00 2.36 44.13 0.10 8.10 16 10 H 0.03 1.23 7.12 -2.39 -0.02 1.21 16 11 C -0.53 -29.12 8.09 25.60 0.21 -28.91 16 12 H 0.06 3.69 4.93 -2.91 -0.01 3.68 16 13 C 0.02 1.30 5.47 84.66 0.46 1.76 16 14 N -0.95 -60.05 13.96 21.45 0.30 -59.75 16 15 Si 0.90 44.54 26.87 68.60 1.84 46.39 16 16 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 17 H -0.31 -15.77 7.11 99.48 0.71 -15.07 16 18 H -0.16 -7.18 5.23 99.48 0.52 -6.66 16 19 C -0.10 -3.09 4.62 30.50 0.14 -2.95 16 20 C 0.06 1.67 5.27 86.36 0.46 2.13 16 21 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 22 H 0.08 1.42 8.09 -2.38 -0.02 1.40 16 23 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.04 1.05 7.42 -2.39 -0.02 1.03 16 25 H 0.07 2.03 8.12 -2.39 -0.02 2.01 16 26 H 0.04 1.94 7.27 -2.38 -0.02 1.93 16 27 H 0.04 1.87 6.90 -2.39 -0.02 1.86 16 28 H 0.08 2.05 6.13 -2.39 -0.01 2.04 16 29 H 0.06 1.73 7.76 -2.39 -0.02 1.71 16 30 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.33 13.97 8.24 -89.69 -0.74 13.24 16 33 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.04 1.01 6.44 -2.39 -0.02 0.99 16 37 H 0.08 1.90 8.08 -2.39 -0.02 1.88 16 Total: -1.00 -64.48 270.21 -0.39 -64.88 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.12 Total: 21.55 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: 3.93 Total: -23.08 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -6.29 Total: -109.73 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.84 Total: 46.39 kcal Total: -64.48 -0.39 -64.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260795932.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.694 kcal (2) G-P(sol) polarization free energy of solvation -64.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds