Wall clock time and date at job start Mon Mar 30 2020 02:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46844 * 111.00007 * 2 1 4 4 C 1.53169 * 109.46434 * 185.52715 * 3 2 1 5 5 C 1.53154 * 109.11501 * 58.73241 * 4 3 2 6 6 N 1.46833 * 109.47800 * 301.24684 * 5 4 3 7 7 C 1.46906 * 111.00117 * 174.48951 * 6 5 4 8 8 C 1.46840 * 111.36891 * 298.70320 * 6 5 4 9 9 C 1.53172 * 109.46062 * 61.30148 * 8 6 5 10 10 C 1.46836 * 111.00589 * 124.42883 * 2 1 3 11 11 C 1.53371 * 108.84489 * 300.08081 * 9 8 6 12 12 C 1.50697 * 109.68961 * 179.12738 * 11 9 8 13 13 H 1.08001 * 119.99710 * 356.31003 * 12 11 9 14 14 C 1.37877 * 120.00055 * 176.30908 * 12 11 9 15 15 N 1.31516 * 119.99823 * 352.66391 * 14 12 11 16 16 Si 1.86794 * 119.99956 * 172.66772 * 14 12 11 17 17 H 1.48501 * 109.47023 * 265.09330 * 16 14 12 18 18 H 1.48499 * 109.47431 * 145.09718 * 16 14 12 19 19 H 1.48501 * 109.47642 * 25.09178 * 16 14 12 20 20 H 1.08995 * 109.47208 * 59.99758 * 1 2 3 21 21 H 1.09001 * 109.46990 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46822 * 299.99589 * 1 2 3 23 23 H 1.08996 * 109.47102 * 65.52622 * 3 2 1 24 24 H 1.09000 * 109.47268 * 305.52410 * 3 2 1 25 25 H 1.09002 * 110.52970 * 179.49240 * 4 3 2 26 26 H 1.09004 * 109.47167 * 181.24389 * 5 4 3 27 27 H 1.09001 * 109.47351 * 61.25178 * 5 4 3 28 28 H 1.08994 * 109.46975 * 184.43028 * 7 6 5 29 29 H 1.09000 * 109.46688 * 304.42433 * 7 6 5 30 30 H 1.08997 * 109.47491 * 64.42514 * 7 6 5 31 31 H 1.08997 * 109.47149 * 301.30959 * 8 6 5 32 32 H 1.08997 * 109.47512 * 181.30424 * 8 6 5 33 33 H 1.08997 * 109.72994 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.46676 * 54.47919 * 10 2 1 35 35 H 1.09002 * 109.46686 * 294.49003 * 10 2 1 36 36 H 1.08997 * 109.69207 * 299.66885 * 11 9 8 37 37 H 0.96996 * 119.99761 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5201 1.3323 -0.1391 5 6 3.8870 0.6119 -1.4399 6 7 3.3339 -0.7481 -1.4192 7 6 3.5535 -1.4254 -2.7041 8 6 3.8874 -1.5339 -0.3090 9 6 3.5202 -0.8678 1.0205 10 6 1.9953 -0.7750 1.1307 11 6 4.1057 0.5496 1.0428 12 6 3.7371 1.2309 2.3355 13 1 3.0946 0.7310 3.0452 14 6 4.2201 2.4923 2.6120 15 7 5.1145 3.0422 1.8200 16 14 3.6041 3.4202 4.1117 17 1 2.4895 4.3178 3.7151 18 1 4.7112 4.2285 4.6829 19 1 3.1219 2.4522 5.1293 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.7280 1.8627 0.9353 24 1 1.5680 1.9241 -0.8364 25 1 3.9287 2.3427 -0.1501 26 1 4.9718 0.5616 -1.5339 27 1 3.4740 1.1592 -2.2873 28 1 3.0662 -2.4003 -2.6889 29 1 3.1339 -0.8221 -3.5092 30 1 4.6231 -1.5564 -2.8678 31 1 4.9721 -1.5825 -0.4036 32 1 3.4747 -2.5424 -0.3364 33 1 3.9286 -1.4480 1.8479 34 1 1.5682 -1.7777 1.1140 35 1 1.7278 -0.2817 2.0651 36 1 5.1905 0.5003 0.9500 37 1 5.4540 3.9298 2.0144 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260976362.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:00 Heat of formation + Delta-G solvation = 21.472039 kcal Electronic energy + Delta-G solvation = -17174.899533 eV Core-core repulsion = 14759.291565 eV Total energy + Delta-G solvation = -2415.607969 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.45949 -35.38212 -33.43949 -31.63121 -31.05368 -26.81285 -26.08297 -25.46738 -23.90569 -21.60647 -20.83425 -20.73581 -17.33144 -15.87698 -15.34838 -14.56029 -14.31581 -14.04129 -13.89332 -13.41231 -13.16062 -12.92905 -12.38273 -12.17664 -11.75958 -11.74530 -11.29563 -11.05264 -10.94628 -10.87129 -10.62471 -10.44571 -10.35375 -9.92922 -9.85426 -9.17161 -8.71261 -8.63442 -8.28754 -7.54695 -6.78619 -6.00823 -4.01307 3.29017 3.37030 3.39614 4.43957 4.76400 5.01569 5.31248 5.67427 5.75672 5.82923 5.87288 6.00637 6.07118 6.15870 6.18611 6.28766 6.29948 6.40014 6.43344 6.51982 6.53985 6.64273 6.75655 6.80035 6.87713 7.03543 7.15094 7.46778 7.59582 7.80190 7.94788 8.00011 8.04622 8.23151 8.27236 8.45794 9.00455 9.60888 11.07895 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.033008 B = 0.011228 C = 0.010040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.063330 B = 2493.270872 C = 2788.213488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.502 5.502 3 C 0.086 3.914 4 C -0.074 4.074 5 C 0.071 3.929 6 N -0.499 5.499 7 C 0.029 3.971 8 C 0.074 3.926 9 C -0.083 4.083 10 C 0.084 3.916 11 C 0.055 3.945 12 C -0.506 4.506 13 H 0.054 0.946 14 C 0.065 3.935 15 N -0.889 5.889 16 Si 0.882 3.118 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.275 1.275 20 H 0.054 0.946 21 H 0.053 0.947 22 H 0.008 0.992 23 H 0.035 0.965 24 H 0.042 0.958 25 H 0.090 0.910 26 H 0.015 0.985 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.007 0.993 31 H 0.015 0.985 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.032 0.968 36 H 0.028 0.972 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.669 -5.829 -5.255 9.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.226 5.226 3 C -0.042 4.042 4 C -0.093 4.093 5 C -0.057 4.057 6 N -0.222 5.222 7 C -0.120 4.120 8 C -0.054 4.054 9 C -0.102 4.102 10 C -0.044 4.044 11 C 0.037 3.963 12 C -0.544 4.544 13 H 0.073 0.927 14 C -0.137 4.137 15 N -0.527 5.527 16 Si 0.710 3.290 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.200 1.200 20 H 0.073 0.927 21 H 0.072 0.928 22 H 0.027 0.973 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.108 0.892 26 H 0.033 0.967 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.026 0.974 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.903 -5.850 -5.630 9.485 hybrid contribution 0.314 0.962 1.395 1.723 sum -4.590 -4.889 -4.235 7.931 Atomic orbital electron populations 1.22267 0.90340 1.00227 0.99101 1.61959 1.04020 1.13957 1.42655 1.21821 0.95911 0.87998 0.98471 1.21351 0.93768 1.00774 0.93433 1.22102 0.95119 0.89381 0.99084 1.61920 1.57834 1.01630 1.00823 1.22305 0.97567 0.99032 0.93126 1.21995 0.95154 0.95923 0.92326 1.21436 0.95018 0.99376 0.94339 1.21792 0.95115 0.95810 0.91688 1.18813 0.95380 0.88789 0.93367 1.21130 1.29567 1.00760 1.02983 0.92743 1.24920 0.94651 0.97823 0.96261 1.69942 1.28583 1.15938 1.38278 0.86739 0.78571 0.80161 0.83527 1.20828 1.21335 1.19999 0.92683 0.92841 0.97308 0.94645 0.93908 0.89210 0.96679 0.92905 0.92549 0.92463 0.97449 0.96655 0.92714 0.91874 0.93627 0.94973 0.95377 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.59 60.06 0.58 1.07 16 2 N -0.50 -9.80 2.99 -242.81 -0.73 -10.53 16 3 C 0.09 1.84 4.71 -3.77 -0.02 1.82 16 4 C -0.07 -1.69 2.70 -90.26 -0.24 -1.93 16 5 C 0.07 1.43 4.91 -3.78 -0.02 1.41 16 6 N -0.50 -9.28 2.99 -242.81 -0.73 -10.01 16 7 C 0.03 0.44 9.59 60.07 0.58 1.02 16 8 C 0.07 1.40 4.91 -3.77 -0.02 1.38 16 9 C -0.08 -1.73 2.86 -90.26 -0.26 -1.98 16 10 C 0.08 1.67 4.70 -3.78 -0.02 1.65 16 11 C 0.06 1.34 1.80 -91.39 -0.16 1.18 16 12 C -0.51 -13.42 6.63 -34.44 -0.23 -13.65 16 13 H 0.05 1.46 6.61 -52.49 -0.35 1.11 16 14 C 0.06 1.76 5.25 -17.82 -0.09 1.66 16 15 N -0.89 -25.01 12.05 55.43 0.67 -24.35 16 16 Si 0.88 21.11 29.54 -169.99 -5.02 16.09 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 21 H 0.05 0.81 8.09 -51.93 -0.42 0.39 16 22 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 23 H 0.04 0.84 7.20 -51.93 -0.37 0.47 16 24 H 0.04 0.86 8.13 -51.93 -0.42 0.44 16 25 H 0.09 2.30 6.83 -51.93 -0.35 1.95 16 26 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 1.00 8.09 -51.93 -0.42 0.58 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 30 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.94 8.13 -51.93 -0.42 0.51 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 35 H 0.03 0.70 6.54 -51.93 -0.34 0.36 16 36 H 0.03 0.77 8.13 -51.93 -0.42 0.35 16 37 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 275.78 15.07 4.16 4.16 Total: -1.00 -27.45 275.78 -8.02 -35.47 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -6.46 Total: -4.47 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 0.09 Total: -6.36 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: -0.79 Total: -44.89 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.45 -8.02 -35.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260976362.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.941 kcal (2) G-P(sol) polarization free energy of solvation -27.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds