Wall clock time and date at job start Mon Mar 30 2020 02:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46844 * 111.00007 * 2 1 4 4 C 1.53169 * 109.46434 * 185.52715 * 3 2 1 5 5 C 1.53154 * 109.11501 * 58.73241 * 4 3 2 6 6 N 1.46833 * 109.47800 * 301.24684 * 5 4 3 7 7 C 1.46906 * 111.00117 * 174.48951 * 6 5 4 8 8 C 1.46840 * 111.36891 * 298.70320 * 6 5 4 9 9 C 1.53172 * 109.46062 * 61.30148 * 8 6 5 10 10 C 1.46836 * 111.00589 * 124.42883 * 2 1 3 11 11 C 1.53371 * 108.84489 * 300.08081 * 9 8 6 12 12 C 1.50697 * 109.68961 * 179.12738 * 11 9 8 13 13 H 1.08001 * 119.99710 * 356.31003 * 12 11 9 14 14 C 1.37877 * 120.00055 * 176.30908 * 12 11 9 15 15 N 1.31516 * 119.99823 * 352.66391 * 14 12 11 16 16 Si 1.86794 * 119.99956 * 172.66772 * 14 12 11 17 17 H 1.48501 * 109.47023 * 265.09330 * 16 14 12 18 18 H 1.48499 * 109.47431 * 145.09718 * 16 14 12 19 19 H 1.48501 * 109.47642 * 25.09178 * 16 14 12 20 20 H 1.08995 * 109.47208 * 59.99758 * 1 2 3 21 21 H 1.09001 * 109.46990 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46822 * 299.99589 * 1 2 3 23 23 H 1.08996 * 109.47102 * 65.52622 * 3 2 1 24 24 H 1.09000 * 109.47268 * 305.52410 * 3 2 1 25 25 H 1.09002 * 110.52970 * 179.49240 * 4 3 2 26 26 H 1.09004 * 109.47167 * 181.24389 * 5 4 3 27 27 H 1.09001 * 109.47351 * 61.25178 * 5 4 3 28 28 H 1.08994 * 109.46975 * 184.43028 * 7 6 5 29 29 H 1.09000 * 109.46688 * 304.42433 * 7 6 5 30 30 H 1.08997 * 109.47491 * 64.42514 * 7 6 5 31 31 H 1.08997 * 109.47149 * 301.30959 * 8 6 5 32 32 H 1.08997 * 109.47512 * 181.30424 * 8 6 5 33 33 H 1.08997 * 109.72994 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.46676 * 54.47919 * 10 2 1 35 35 H 1.09002 * 109.46686 * 294.49003 * 10 2 1 36 36 H 1.08997 * 109.69207 * 299.66885 * 11 9 8 37 37 H 0.96996 * 119.99761 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5201 1.3323 -0.1391 5 6 3.8870 0.6119 -1.4399 6 7 3.3339 -0.7481 -1.4192 7 6 3.5535 -1.4254 -2.7041 8 6 3.8874 -1.5339 -0.3090 9 6 3.5202 -0.8678 1.0205 10 6 1.9953 -0.7750 1.1307 11 6 4.1057 0.5496 1.0428 12 6 3.7371 1.2309 2.3355 13 1 3.0946 0.7310 3.0452 14 6 4.2201 2.4923 2.6120 15 7 5.1145 3.0422 1.8200 16 14 3.6041 3.4202 4.1117 17 1 2.4895 4.3178 3.7151 18 1 4.7112 4.2285 4.6829 19 1 3.1219 2.4522 5.1293 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.7280 1.8627 0.9353 24 1 1.5680 1.9241 -0.8364 25 1 3.9287 2.3427 -0.1501 26 1 4.9718 0.5616 -1.5339 27 1 3.4740 1.1592 -2.2873 28 1 3.0662 -2.4003 -2.6889 29 1 3.1339 -0.8221 -3.5092 30 1 4.6231 -1.5564 -2.8678 31 1 4.9721 -1.5825 -0.4036 32 1 3.4747 -2.5424 -0.3364 33 1 3.9286 -1.4480 1.8479 34 1 1.5682 -1.7777 1.1140 35 1 1.7278 -0.2817 2.0651 36 1 5.1905 0.5003 0.9500 37 1 5.4540 3.9298 2.0144 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260976362.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:59 Heat of formation + Delta-G solvation = 5.231464 kcal Electronic energy + Delta-G solvation = -17175.603777 eV Core-core repulsion = 14759.291565 eV Total energy + Delta-G solvation = -2416.312213 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.12389 -36.87426 -35.32178 -33.33452 -32.85406 -28.56927 -27.53888 -27.07841 -25.60847 -23.34205 -22.48735 -22.30341 -19.15128 -17.79467 -17.08183 -16.41000 -15.83275 -15.62528 -15.49997 -14.98667 -14.68041 -14.59624 -14.21290 -13.85796 -13.26147 -13.22432 -12.89893 -12.70323 -12.64461 -12.58419 -12.27044 -12.09841 -12.07703 -11.73812 -11.54756 -11.04056 -10.59476 -10.44660 -10.30814 -9.07932 -8.35275 -8.09944 -6.16264 1.36096 1.38707 1.47067 2.42105 3.19915 3.26888 3.48790 4.11410 4.20546 4.31798 4.43817 4.55613 4.68126 4.70396 4.75677 4.76292 4.84670 4.93856 4.95414 5.00412 5.04410 5.10361 5.14596 5.15367 5.25390 5.29825 5.39003 5.61460 5.65720 5.87668 5.96475 6.38366 6.46068 6.57970 6.59753 6.67840 6.93067 7.48471 8.97872 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.033008 B = 0.011228 C = 0.010040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.063330 B = 2493.270872 C = 2788.213488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.500 5.500 3 C 0.097 3.903 4 C -0.073 4.073 5 C 0.081 3.919 6 N -0.502 5.502 7 C 0.030 3.970 8 C 0.080 3.920 9 C -0.084 4.084 10 C 0.090 3.910 11 C 0.054 3.946 12 C -0.512 4.512 13 H 0.049 0.951 14 C 0.018 3.982 15 N -0.918 5.918 16 Si 0.939 3.061 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.270 1.270 20 H 0.068 0.932 21 H 0.076 0.924 22 H 0.004 0.996 23 H 0.004 0.996 24 H 0.057 0.943 25 H 0.052 0.948 26 H -0.001 1.001 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.009 0.991 31 H 0.005 0.995 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.008 0.992 36 H -0.016 1.016 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.386 -7.241 -6.082 11.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.223 5.223 3 C -0.032 4.032 4 C -0.092 4.092 5 C -0.047 4.047 6 N -0.225 5.225 7 C -0.118 4.118 8 C -0.048 4.048 9 C -0.103 4.103 10 C -0.038 4.038 11 C 0.035 3.965 12 C -0.551 4.551 13 H 0.067 0.933 14 C -0.180 4.180 15 N -0.558 5.558 16 Si 0.765 3.235 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.195 1.195 20 H 0.087 0.913 21 H 0.094 0.906 22 H 0.022 0.978 23 H 0.022 0.978 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.017 0.983 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.028 0.972 31 H 0.023 0.977 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.027 0.973 36 H 0.002 0.998 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.633 -7.279 -6.461 11.778 hybrid contribution 0.859 1.370 1.643 2.305 sum -5.774 -5.909 -4.818 9.564 Atomic orbital electron populations 1.22352 0.88046 1.01887 0.99556 1.61960 1.06012 1.12231 1.42114 1.21622 0.94793 0.89348 0.97409 1.21166 0.94800 0.98864 0.94412 1.21912 0.94280 0.90723 0.97828 1.61893 1.57419 1.00862 1.02350 1.22372 0.98138 0.99854 0.91465 1.21937 0.94810 0.96924 0.91168 1.21398 0.95884 0.97098 0.95933 1.21736 0.94207 0.97057 0.90808 1.18734 0.92959 0.91474 0.93297 1.21386 1.28924 1.00982 1.03758 0.93327 1.25592 0.94880 0.98728 0.98819 1.70067 1.29704 1.16134 1.39864 0.85837 0.78020 0.78977 0.80640 1.20481 1.21143 1.19452 0.91285 0.90559 0.97767 0.97765 0.92494 0.92965 0.98327 0.91382 0.90490 0.91279 0.97203 0.97658 0.89844 0.92135 0.90705 0.97337 0.99752 0.93246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 9.59 127.69 1.23 2.12 16 2 N -0.50 -18.37 2.99 -922.11 -2.76 -21.13 16 3 C 0.10 4.09 4.71 86.37 0.41 4.50 16 4 C -0.07 -3.39 2.70 -10.56 -0.03 -3.42 16 5 C 0.08 3.22 4.91 86.37 0.42 3.64 16 6 N -0.50 -17.45 2.99 -922.13 -2.76 -20.21 16 7 C 0.03 0.82 9.59 127.69 1.23 2.04 16 8 C 0.08 2.84 4.91 86.37 0.42 3.27 16 9 C -0.08 -3.47 2.86 -10.56 -0.03 -3.50 16 10 C 0.09 3.42 4.70 86.37 0.41 3.83 16 11 C 0.05 2.71 1.80 -11.29 -0.02 2.69 16 12 C -0.51 -27.95 6.63 25.60 0.17 -27.78 16 13 H 0.05 2.65 6.61 -2.91 -0.02 2.64 16 14 C 0.02 1.02 5.25 84.65 0.44 1.46 16 15 N -0.92 -53.61 12.05 21.45 0.26 -53.35 16 16 Si 0.94 44.14 29.54 68.60 2.03 46.17 16 17 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 18 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 20 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 21 H 0.08 1.96 8.09 -2.39 -0.02 1.94 16 22 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 23 H 0.00 0.20 7.20 -2.39 -0.02 0.18 16 24 H 0.06 2.23 8.13 -2.39 -0.02 2.21 16 25 H 0.05 2.80 6.83 -2.39 -0.02 2.79 16 26 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 27 H 0.07 2.48 8.09 -2.39 -0.02 2.46 16 28 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.07 1.74 8.09 -2.39 -0.02 1.72 16 30 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.01 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.08 2.53 8.13 -2.39 -0.02 2.51 16 33 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.07 2.43 8.09 -2.39 -0.02 2.41 16 35 H 0.01 0.36 6.54 -2.39 -0.02 0.35 16 36 H -0.02 -0.91 8.13 -2.39 -0.02 -0.93 16 37 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -59.95 275.78 2.42 -57.53 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: 1.01 Total: 2.13 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: 4.65 Total: -11.14 kcal Atomic # 7 Polarization: -89.43 SS G_CDS: -5.26 Total: -94.69 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -59.95 2.42 -57.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260976362.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.766 kcal (2) G-P(sol) polarization free energy of solvation -59.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds