Wall clock time and date at job start Mon Mar 30 2020 03:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46962 * 110.99999 * 2 1 4 4 C 1.53043 * 109.38325 * 183.17921 * 3 2 1 5 5 N 1.46958 * 109.36503 * 301.63163 * 4 3 2 6 6 C 1.46904 * 110.99682 * 183.16873 * 5 4 3 7 7 C 1.53775 * 113.61128 * 155.31886 * 6 5 4 8 8 C 1.53961 * 87.01924 * 220.04636 * 7 6 5 9 9 C 1.53778 * 113.61434 * 57.70886 * 6 5 4 10 10 C 1.46956 * 110.89414 * 59.29215 * 5 4 3 11 11 C 1.46953 * 111.00593 * 123.80217 * 2 1 3 12 12 H 1.08998 * 109.49033 * 296.80561 * 11 2 1 13 13 C 1.50696 * 109.48680 * 56.84348 * 11 2 1 14 14 H 1.08001 * 120.00171 * 35.11203 * 13 11 2 15 15 C 1.37876 * 120.00172 * 215.10487 * 13 11 2 16 16 N 1.31519 * 120.00108 * 5.20200 * 15 13 11 17 17 Si 1.86808 * 120.00261 * 185.20167 * 15 13 11 18 18 H 1.48497 * 109.47023 * 89.99975 * 17 15 13 19 19 H 1.48496 * 109.47114 * 210.00052 * 17 15 13 20 20 H 1.48497 * 109.46704 * 330.00075 * 17 15 13 21 21 H 1.08991 * 109.47291 * 54.19109 * 1 2 3 22 22 H 1.09005 * 109.46635 * 174.18899 * 1 2 3 23 23 H 1.09003 * 109.47037 * 294.18282 * 1 2 3 24 24 H 1.08999 * 109.48743 * 303.16251 * 3 2 1 25 25 H 1.09001 * 109.48512 * 63.20134 * 3 2 1 26 26 H 1.08998 * 109.49072 * 61.58349 * 4 3 2 27 27 H 1.09008 * 109.48475 * 181.64514 * 4 3 2 28 28 H 1.09005 * 112.84520 * 286.51218 * 6 5 4 29 29 H 1.08997 * 113.61614 * 334.56373 * 7 6 5 30 30 H 1.08997 * 113.61770 * 105.47179 * 7 6 5 31 31 H 1.08999 * 113.53647 * 270.81014 * 8 7 6 32 32 H 1.09000 * 113.74417 * 139.94237 * 8 7 6 33 33 H 1.08994 * 113.61583 * 254.52901 * 9 6 5 34 34 H 1.09000 * 113.61541 * 25.35331 * 9 6 5 35 35 H 1.09009 * 109.48407 * 180.71982 * 10 5 4 36 36 H 1.09000 * 109.50972 * 60.66767 * 10 5 4 37 37 H 0.96998 * 120.00170 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5234 1.3296 -0.0801 5 7 4.0501 0.5660 1.0597 6 6 5.5191 0.5661 1.0596 7 6 6.1352 0.3422 2.4507 8 6 7.1815 1.4056 2.0699 9 6 6.1351 1.9746 1.0972 10 6 3.5235 -0.8060 1.0596 11 6 1.9958 -0.7632 1.1400 12 1 1.6935 -0.2824 2.0703 13 6 1.4506 -2.1675 1.0997 14 1 1.2868 -2.6563 0.1507 15 6 1.1611 -2.8286 2.2745 16 7 1.2630 -2.1999 3.4252 17 14 0.6239 -4.6173 2.2319 18 1 1.8182 -5.4950 2.3228 19 1 -0.2795 -4.8902 3.3784 20 1 -0.0940 -4.8882 0.9606 21 1 -0.3633 0.6012 -0.8333 22 1 -0.3633 -1.0225 -0.1041 23 1 -0.3633 0.4210 0.9375 24 1 1.6012 1.9129 -0.8602 25 1 1.6934 1.8775 0.9172 26 1 3.8256 0.8488 -1.0104 27 1 3.9174 2.3456 -0.0507 28 1 5.9423 -0.0751 0.2863 29 1 5.4837 0.6447 3.2705 30 1 6.5542 -0.6546 2.5874 31 1 8.0602 0.9935 1.5739 32 1 7.4345 2.0838 2.8848 33 1 6.5540 2.2936 0.1429 34 1 5.4830 2.7245 1.5451 35 1 3.9180 -1.3470 1.9198 36 1 3.8254 -1.3117 0.1424 37 1 1.0589 -2.6649 4.2517 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261014902.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:37 Heat of formation + Delta-G solvation = 30.045943 kcal Electronic energy + Delta-G solvation = -16329.287805 eV Core-core repulsion = 13914.051629 eV Total energy + Delta-G solvation = -2415.236176 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.14954 -37.17669 -33.47174 -32.67317 -29.82749 -27.40285 -25.68024 -24.71235 -23.88967 -22.11050 -21.48148 -18.97166 -18.69825 -16.53583 -15.69757 -15.11347 -14.65386 -14.12623 -14.04989 -13.73268 -13.28073 -12.99681 -12.50774 -12.10118 -12.05506 -11.50769 -11.21384 -11.12313 -10.94675 -10.84056 -10.72433 -10.54751 -10.33654 -10.16911 -9.95496 -9.68024 -9.52839 -8.94408 -8.50964 -7.57810 -7.05814 -6.03396 -4.08653 3.29555 3.36550 3.40151 4.39140 4.61301 4.90262 4.98357 5.10141 5.18753 5.23859 5.39360 5.71065 5.86447 5.88572 5.94565 6.01870 6.05662 6.12934 6.27552 6.30789 6.34714 6.49522 6.52742 6.60686 6.69107 6.76082 6.84829 6.96715 7.28594 7.63911 7.77798 7.84982 7.96370 8.12742 8.30991 8.68270 9.08397 9.57226 11.03535 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.028011 B = 0.009102 C = 0.007333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.358138 B = 3075.657820 C = 3817.573459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.547 5.547 3 C 0.056 3.944 4 C 0.065 3.935 5 N -0.532 5.532 6 C 0.055 3.945 7 C -0.124 4.124 8 C -0.143 4.143 9 C -0.131 4.131 10 C 0.078 3.922 11 C 0.207 3.793 12 H 0.042 0.958 13 C -0.507 4.507 14 H 0.060 0.940 15 C 0.065 3.935 16 N -0.888 5.888 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.273 1.273 21 H 0.037 0.963 22 H 0.074 0.926 23 H 0.012 0.988 24 H 0.059 0.941 25 H 0.028 0.972 26 H 0.029 0.971 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.019 0.981 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.777 6.680 -3.721 10.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.273 5.273 3 C -0.073 4.073 4 C -0.063 4.063 5 N -0.257 5.257 6 C -0.054 4.054 7 C -0.162 4.162 8 C -0.181 4.181 9 C -0.168 4.168 10 C -0.050 4.050 11 C 0.100 3.900 12 H 0.059 0.941 13 C -0.546 4.546 14 H 0.078 0.922 15 C -0.138 4.138 16 N -0.526 5.526 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.198 1.198 21 H 0.056 0.944 22 H 0.093 0.907 23 H 0.031 0.969 24 H 0.077 0.923 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.038 0.962 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.745 6.647 -3.517 10.102 hybrid contribution -0.259 -1.036 0.060 1.070 sum 6.487 5.611 -3.457 9.247 Atomic orbital electron populations 1.22006 0.88495 1.01931 0.97532 1.62347 1.07232 1.10526 1.47205 1.22046 0.94088 0.92037 0.99113 1.21974 0.95001 0.97288 0.92079 1.62559 1.04896 1.16698 1.41523 1.23073 0.88755 0.96433 0.97123 1.22939 0.97065 0.98395 0.97776 1.22759 0.96804 0.99051 0.99453 1.22966 0.97741 0.97075 0.99063 1.22400 0.97949 0.85580 0.99025 1.19447 0.89022 0.93300 0.88189 0.94059 1.21001 1.42939 0.98142 0.92520 0.92165 1.25018 0.94939 0.98238 0.95588 1.69958 1.48792 1.36201 0.97616 0.86575 0.78532 0.85156 0.77627 1.20596 1.21292 1.19783 0.94420 0.90733 0.96900 0.92290 0.95355 0.95247 0.91804 0.92671 0.89181 0.92090 0.90783 0.91599 0.92332 0.89546 0.91261 0.96245 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.04 9.23 60.06 0.55 1.60 16 2 N -0.55 -12.49 4.78 -236.14 -1.13 -13.62 16 3 C 0.06 1.10 5.62 -3.77 -0.02 1.08 16 4 C 0.06 1.19 5.43 -3.77 -0.02 1.17 16 5 N -0.53 -10.63 4.67 -225.51 -1.05 -11.68 16 6 C 0.06 0.92 3.20 -66.90 -0.21 0.71 16 7 C -0.12 -1.93 7.67 -25.83 -0.20 -2.12 16 8 C -0.14 -1.79 8.09 -25.82 -0.21 -1.99 16 9 C -0.13 -1.78 6.59 -25.92 -0.17 -1.95 16 10 C 0.08 1.83 4.85 -3.77 -0.02 1.82 16 11 C 0.21 5.31 2.11 -68.81 -0.15 5.16 16 12 H 0.04 1.22 7.24 -51.93 -0.38 0.84 16 13 C -0.51 -13.93 6.98 -34.44 -0.24 -14.17 16 14 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 15 C 0.07 1.80 5.45 -17.82 -0.10 1.70 16 16 N -0.89 -25.64 12.77 55.43 0.71 -24.94 16 17 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 22 H 0.07 1.68 7.08 -51.93 -0.37 1.31 16 23 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.06 1.01 8.11 -51.93 -0.42 0.59 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 1.01 7.04 -51.92 -0.37 0.64 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.09 1.22 7.98 -51.93 -0.41 0.80 16 35 H 0.07 1.74 7.98 -51.92 -0.41 1.33 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 289.35 15.07 4.36 4.36 Total: -1.00 -28.55 289.35 -9.47 -38.02 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -6.55 Total: -1.36 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -0.78 Total: -7.01 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -1.47 Total: -50.23 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.55 -9.47 -38.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261014902.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.061 kcal (2) G-P(sol) polarization free energy of solvation -28.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds