Wall clock time and date at job start Mon Mar 30 2020 03:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46881 * 119.99970 * 2 1 3 5 5 C 1.52999 * 109.47169 * 172.86753 * 4 2 1 6 6 H 1.08997 * 109.47200 * 307.74670 * 5 4 2 7 7 C 1.50697 * 109.47264 * 67.74864 * 5 4 2 8 8 H 1.08000 * 119.99703 * 35.35705 * 7 5 4 9 9 C 1.37878 * 120.00130 * 215.35063 * 7 5 4 10 10 N 1.31513 * 119.99710 * 355.49134 * 9 7 5 11 11 Si 1.86799 * 120.00014 * 175.48161 * 9 7 5 12 12 H 1.48500 * 109.46841 * 90.00755 * 11 9 7 13 13 H 1.48500 * 109.47165 * 210.00433 * 11 9 7 14 14 H 1.48494 * 109.47306 * 330.00509 * 11 9 7 15 15 C 1.53008 * 109.47145 * 187.74990 * 5 4 2 16 16 C 1.52998 * 109.46975 * 185.07457 * 15 5 4 17 17 C 1.52996 * 109.46904 * 179.97438 * 16 15 5 18 18 C 1.53000 * 109.47145 * 60.00491 * 17 16 15 19 19 C 1.53003 * 109.46849 * 300.00076 * 18 17 16 20 20 C 1.52991 * 109.47504 * 59.99746 * 19 18 17 21 21 H 1.09000 * 109.47239 * 299.99911 * 1 2 3 22 22 H 1.09001 * 109.46935 * 59.99959 * 1 2 3 23 23 H 1.09002 * 109.46982 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47468 * 239.99373 * 2 1 3 25 25 H 1.08994 * 109.47133 * 190.28044 * 3 2 1 26 26 H 1.09001 * 109.47008 * 310.28231 * 3 2 1 27 27 H 1.08998 * 109.46883 * 70.27621 * 3 2 1 28 28 H 1.09003 * 109.47455 * 52.86118 * 4 2 1 29 29 H 1.09003 * 109.47237 * 292.86124 * 4 2 1 30 30 H 0.97005 * 120.00325 * 5.12849 * 10 9 7 31 31 H 1.08993 * 109.46791 * 305.07479 * 15 5 4 32 32 H 1.09001 * 109.47587 * 300.00273 * 16 15 5 33 33 H 1.09005 * 109.47331 * 59.99978 * 16 15 5 34 34 H 1.09001 * 109.47864 * 300.00297 * 17 16 15 35 35 H 1.09008 * 109.47298 * 179.97438 * 17 16 15 36 36 H 1.09005 * 109.47578 * 179.97438 * 18 17 16 37 37 H 1.09002 * 109.47411 * 59.99278 * 18 17 16 38 38 H 1.09001 * 109.46668 * 299.99280 * 19 18 17 39 39 H 1.09004 * 109.46882 * 180.02562 * 19 18 17 40 40 H 1.08996 * 109.47587 * 180.02562 * 20 19 18 41 41 H 1.09001 * 109.47122 * 59.99730 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5594 -0.8783 1.1630 6 1 3.8236 -1.3389 0.2112 7 6 4.2110 0.4769 1.2633 8 1 3.7827 1.2361 1.9009 9 6 5.3539 0.7474 0.5411 10 7 5.9255 -0.2030 -0.1656 11 14 6.0902 2.4640 0.5663 12 1 7.0678 2.5669 1.6793 13 1 6.7786 2.7263 -0.7230 14 1 5.0095 3.4634 0.7627 15 6 4.0466 -1.7646 2.3111 16 6 5.5755 -1.8189 2.3001 17 6 6.0627 -2.7047 3.4485 18 6 5.5010 -4.1174 3.2765 19 6 3.9720 -4.0632 3.2874 20 6 3.4848 -3.1774 2.1391 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 3.1144 1.4479 -0.1834 26 1 1.5347 2.0065 -0.7840 27 1 1.8342 1.9006 0.9674 28 1 1.5761 -1.7054 1.3155 29 1 1.7846 -0.1390 2.1347 30 1 5.5035 -1.0733 -0.2392 31 1 3.7045 -1.3510 3.2597 32 1 5.9177 -2.2325 1.3514 33 1 5.9758 -0.8124 2.4230 34 1 5.7206 -2.2907 4.3971 35 1 7.1520 -2.7437 3.4404 36 1 5.8484 -4.7487 4.0944 37 1 5.8430 -4.5315 2.3279 38 1 3.6300 -3.6493 4.2360 39 1 3.5719 -5.0697 3.1653 40 1 2.3956 -3.1383 2.1471 41 1 3.8270 -3.5913 1.1905 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261142600.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:10 Heat of formation + Delta-G solvation = -65.063595 kcal Electronic energy + Delta-G solvation = -16883.102273 eV Core-core repulsion = 14567.282181 eV Total energy + Delta-G solvation = -2315.820092 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 224.184 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.02807 -37.53347 -34.94955 -32.74326 -31.35539 -29.21659 -27.94891 -26.34730 -24.00890 -23.20509 -21.52152 -20.83570 -20.32812 -18.45554 -16.30983 -16.00468 -15.67130 -15.50996 -14.92681 -14.76338 -14.59316 -14.18075 -14.01328 -13.52212 -13.04789 -12.92482 -12.83441 -12.68221 -12.52532 -12.32850 -12.07268 -11.98693 -11.87582 -11.66553 -11.41688 -11.34973 -11.21712 -11.02585 -10.81187 -10.56038 -10.11355 -10.04218 -8.32949 -5.91977 1.54636 1.60424 1.76422 2.64584 3.40970 3.90165 4.03867 4.05076 4.15088 4.29713 4.35086 4.47795 4.52932 4.72301 4.78699 4.80535 4.82255 4.87548 4.88838 4.93402 4.98248 5.07085 5.15816 5.18679 5.24220 5.27647 5.31403 5.36073 5.40200 5.47817 5.49258 5.64004 5.69748 5.76652 5.87232 5.92191 6.01260 6.39622 6.48517 6.93001 7.72263 9.05151 Molecular weight = 224.18amu Principal moments of inertia in cm(-1) A = 0.019035 B = 0.012726 C = 0.008188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.591959 B = 2199.643158 C = 3418.877511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.083 4.083 3 C -0.140 4.140 4 C -0.091 4.091 5 C 0.027 3.973 6 H 0.003 0.997 7 C -0.554 4.554 8 H 0.036 0.964 9 C -0.019 4.019 10 N -0.943 5.943 11 Si 1.085 2.915 12 H -0.284 1.284 13 H -0.292 1.292 14 H -0.273 1.273 15 C -0.068 4.068 16 C -0.086 4.086 17 C -0.118 4.118 18 C -0.112 4.112 19 C -0.111 4.111 20 C -0.113 4.113 21 H 0.054 0.946 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.038 0.962 25 H 0.068 0.932 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.049 0.951 29 H 0.039 0.961 30 H 0.261 0.739 31 H 0.040 0.960 32 H 0.028 0.972 33 H 0.038 0.962 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.017 -4.437 4.954 8.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 C -0.197 4.197 4 C -0.128 4.128 5 C 0.008 3.992 6 H 0.021 0.979 7 C -0.592 4.592 8 H 0.054 0.946 9 C -0.218 4.218 10 N -0.582 5.582 11 Si 0.911 3.089 12 H -0.211 1.211 13 H -0.218 1.218 14 H -0.198 1.198 15 C -0.087 4.087 16 C -0.124 4.124 17 C -0.156 4.156 18 C -0.149 4.149 19 C -0.149 4.149 20 C -0.150 4.150 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.056 0.944 25 H 0.086 0.914 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.749 -3.524 4.420 7.383 hybrid contribution -0.913 -0.651 0.251 1.149 sum -5.662 -4.176 4.671 8.445 Atomic orbital electron populations 1.21812 0.94414 1.01562 1.01609 1.20897 0.95423 0.96529 0.97354 1.22054 1.03044 0.95348 0.99276 1.21584 0.96738 0.97960 0.96536 1.19029 0.92248 0.94558 0.93346 0.97895 1.21908 1.11919 0.98404 1.27014 0.94595 1.26410 0.95447 1.05764 0.94184 1.70858 1.39669 1.04961 1.42748 0.83345 0.75962 0.73276 0.76288 1.21079 1.21787 1.19767 1.21183 0.94609 0.94276 0.98675 1.21272 0.96220 0.98315 0.96581 1.21591 0.99429 0.96175 0.98386 1.21494 0.95926 0.96028 1.01496 1.21502 0.95485 0.99559 0.98323 1.21649 0.99860 0.95466 0.98047 0.92710 0.92439 0.92437 0.94376 0.91369 0.94420 0.94379 0.93236 0.94214 0.92704 0.94102 0.95277 0.94365 0.92320 0.92945 0.90475 0.93176 0.91917 0.90814 0.91949 0.94225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.09 9.17 71.98 0.66 -3.43 16 2 C -0.08 -3.21 2.90 -10.79 -0.03 -3.24 16 3 C -0.14 -5.75 7.86 71.98 0.57 -5.19 16 4 C -0.09 -3.66 4.23 30.59 0.13 -3.53 16 5 C 0.03 1.27 1.36 -11.54 -0.02 1.25 16 6 H 0.00 0.15 6.31 -2.39 -0.02 0.14 16 7 C -0.55 -28.73 3.99 25.60 0.10 -28.63 16 8 H 0.04 1.91 7.29 -2.91 -0.02 1.89 16 9 C -0.02 -1.06 3.82 84.66 0.32 -0.73 16 10 N -0.94 -55.12 12.71 21.45 0.27 -54.85 16 11 Si 1.09 50.19 29.77 68.60 2.04 52.24 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 13 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 14 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 15 C -0.07 -2.89 1.77 -10.79 -0.02 -2.91 16 16 C -0.09 -3.84 3.85 30.59 0.12 -3.72 16 17 C -0.12 -4.16 5.92 30.59 0.18 -3.98 16 18 C -0.11 -3.31 5.92 30.60 0.18 -3.13 16 19 C -0.11 -3.20 5.92 30.59 0.18 -3.02 16 20 C -0.11 -3.96 4.97 30.59 0.15 -3.81 16 21 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.04 1.58 8.11 -2.39 -0.02 1.56 16 25 H 0.07 3.28 4.91 -2.39 -0.01 3.27 16 26 H 0.04 1.35 8.11 -2.39 -0.02 1.33 16 27 H 0.04 1.53 7.82 -2.39 -0.02 1.51 16 28 H 0.05 1.81 6.24 -2.39 -0.01 1.80 16 29 H 0.04 1.62 8.06 -2.39 -0.02 1.60 16 30 H 0.26 15.47 5.18 -92.70 -0.48 14.99 16 31 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.03 1.42 6.84 -2.39 -0.02 1.40 16 33 H 0.04 1.96 6.36 -2.38 -0.02 1.94 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.06 2.05 6.41 -2.39 -0.02 2.03 16 41 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -57.06 296.67 6.08 -50.97 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 1.24 Total: 15.70 kcal Atomic # 6 Polarization: -66.59 SS G_CDS: 2.53 Total: -64.06 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.27 Total: -54.85 kcal Atomic # 14 Polarization: 50.19 SS G_CDS: 2.04 Total: 52.24 kcal Total: -57.06 6.08 -50.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261142600.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.090 kcal (2) G-P(sol) polarization free energy of solvation -57.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds