Wall clock time and date at job start Mon Mar 30 2020 03:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47269 * 2 1 4 4 C 1.52998 * 109.47488 * 239.99929 * 2 1 3 5 5 C 1.53005 * 109.46796 * 119.99671 * 2 1 3 6 6 C 1.53001 * 109.46801 * 53.88429 * 5 2 1 7 7 H 1.09000 * 109.47049 * 307.31916 * 6 5 2 8 8 C 1.50701 * 109.47362 * 67.31884 * 6 5 2 9 9 H 1.07992 * 120.00114 * 242.49203 * 8 6 5 10 10 C 1.37884 * 119.99868 * 62.49249 * 8 6 5 11 11 N 1.31509 * 119.99837 * 193.51188 * 10 8 6 12 12 Si 1.86799 * 119.99815 * 13.50850 * 10 8 6 13 13 H 1.48510 * 109.47020 * 84.81092 * 12 10 8 14 14 H 1.48499 * 109.47054 * 204.80367 * 12 10 8 15 15 H 1.48498 * 109.47560 * 324.80836 * 12 10 8 16 16 C 1.53006 * 109.46880 * 187.31752 * 6 5 2 17 17 C 1.54264 * 110.03150 * 177.16290 * 16 6 5 18 18 C 1.54889 * 104.19751 * 217.10595 * 17 16 6 19 19 C 1.54891 * 102.74589 * 37.94456 * 18 17 16 20 20 C 1.53878 * 110.02893 * 60.00100 * 16 6 5 21 21 H 1.08998 * 109.47288 * 300.00283 * 1 2 3 22 22 H 1.08999 * 109.46916 * 60.00179 * 1 2 3 23 23 H 1.08996 * 109.47207 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47004 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47006 * 299.99766 * 3 2 1 26 26 H 1.09003 * 109.47292 * 60.00117 * 3 2 1 27 27 H 1.09010 * 109.46626 * 311.45230 * 4 2 1 28 28 H 1.08997 * 109.47124 * 71.44498 * 4 2 1 29 29 H 1.08999 * 109.47288 * 191.45450 * 4 2 1 30 30 H 1.09001 * 109.47545 * 293.88348 * 5 2 1 31 31 H 1.09002 * 109.46879 * 173.88151 * 5 2 1 32 32 H 0.97000 * 120.00300 * 180.02562 * 11 10 8 33 33 H 1.08998 * 110.01695 * 298.60945 * 16 6 5 34 34 H 1.09005 * 110.49070 * 335.78838 * 17 16 6 35 35 H 1.09006 * 110.48514 * 98.42886 * 17 16 6 36 36 H 1.08997 * 110.75761 * 279.63209 * 18 17 16 37 37 H 1.08997 * 110.91300 * 156.33087 * 18 17 16 38 38 H 1.08997 * 110.48351 * 203.37252 * 19 18 17 39 39 H 1.08996 * 110.59536 * 80.79337 * 19 18 17 40 40 H 1.09002 * 110.02954 * 238.56649 * 20 16 6 41 41 H 1.08995 * 110.03590 * 0.02562 * 20 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7212 1.2493 6 6 1.4082 -2.1125 1.3285 7 1 0.3245 -2.0244 1.2506 8 6 1.9256 -2.9642 0.1981 9 1 1.2435 -3.3429 -0.5486 10 6 3.2699 -3.2601 0.1173 11 7 3.7659 -3.7682 -0.9896 12 14 4.3864 -2.9392 1.5801 13 1 4.3291 -4.0958 2.5098 14 1 5.7816 -2.7536 1.1065 15 1 3.9363 -1.7132 2.2869 16 6 1.7723 -2.7626 2.6649 17 6 1.0836 -4.1374 2.7888 18 6 0.6946 -4.2340 4.2849 19 6 0.2616 -2.7850 4.6197 20 6 1.2496 -1.9027 3.8290 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.5197 -1.6730 -1.3571 28 1 1.8529 -0.1033 -2.1274 29 1 3.1107 -0.9014 -1.1530 30 1 1.7687 -0.1481 2.1360 31 1 3.1244 -0.8171 1.1963 32 1 4.7115 -3.9767 -1.0464 33 1 2.8535 -2.8774 2.7416 34 1 0.1941 -4.1766 2.1600 35 1 1.7758 -4.9362 2.5222 36 1 1.5524 -4.5301 4.8887 37 1 -0.1341 -4.9275 4.4274 38 1 0.3538 -2.5969 5.6893 39 1 -0.7608 -2.6041 4.2883 40 1 2.0771 -1.6010 4.4712 41 1 0.7362 -1.0226 3.4420 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261148593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:20 Heat of formation + Delta-G solvation = -16.527128 kcal Electronic energy + Delta-G solvation = -17255.142913 eV Core-core repulsion = 14941.427521 eV Total energy + Delta-G solvation = -2313.715393 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 224.184 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.67866 -36.46878 -32.85197 -30.87653 -28.16011 -26.85091 -26.50583 -25.94027 -24.65472 -21.07227 -20.11192 -19.35860 -17.79520 -16.06579 -15.56083 -14.57530 -14.24988 -13.76703 -13.43166 -13.38332 -12.78855 -12.74447 -12.22481 -11.97080 -11.57827 -11.20422 -11.14392 -10.98330 -10.81067 -10.60404 -10.38928 -10.31059 -10.23071 -10.10214 -9.90807 -9.72331 -9.61287 -9.49470 -9.17751 -8.82012 -8.27396 -8.14273 -6.01474 -3.87437 3.32898 3.42188 3.46903 4.48764 5.22014 5.28943 5.31269 5.40641 5.66235 5.72842 5.78373 5.99933 6.10997 6.13159 6.21190 6.22593 6.28038 6.35154 6.42091 6.43477 6.46840 6.51360 6.60066 6.61801 6.69560 6.72103 6.83039 6.90763 7.03161 7.05928 7.13937 7.15860 7.26066 7.40049 7.51398 7.59639 7.91125 7.96300 8.61646 9.01278 9.66498 11.11810 Molecular weight = 224.18amu Principal moments of inertia in cm(-1) A = 0.021257 B = 0.014501 C = 0.010630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.914535 B = 1930.474286 C = 2633.371850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.057 4.057 3 C -0.140 4.140 4 C -0.125 4.125 5 C -0.109 4.109 6 C 0.022 3.978 7 H 0.045 0.955 8 C -0.493 4.493 9 H 0.071 0.929 10 C 0.077 3.923 11 N -0.895 5.895 12 Si 0.870 3.130 13 H -0.287 1.287 14 H -0.310 1.310 15 H -0.248 1.248 16 C -0.098 4.098 17 C -0.099 4.099 18 C -0.131 4.131 19 C -0.121 4.121 20 C -0.124 4.124 21 H 0.038 0.962 22 H 0.038 0.962 23 H 0.065 0.935 24 H 0.046 0.954 25 H 0.044 0.956 26 H 0.041 0.959 27 H 0.096 0.904 28 H 0.011 0.989 29 H 0.049 0.951 30 H 0.031 0.969 31 H 0.057 0.943 32 H 0.260 0.740 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.046 0.954 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.022 4.899 6.860 9.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.057 4.057 3 C -0.197 4.197 4 C -0.182 4.182 5 C -0.146 4.146 6 C 0.003 3.997 7 H 0.064 0.936 8 C -0.531 4.531 9 H 0.089 0.911 10 C -0.124 4.124 11 N -0.533 5.533 12 Si 0.703 3.297 13 H -0.215 1.215 14 H -0.239 1.239 15 H -0.174 1.174 16 C -0.116 4.116 17 C -0.136 4.136 18 C -0.169 4.169 19 C -0.159 4.159 20 C -0.161 4.161 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.084 0.916 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.115 0.885 28 H 0.030 0.970 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.862 4.838 6.750 9.624 hybrid contribution 0.968 0.117 0.844 1.290 sum -3.894 4.955 7.595 9.869 Atomic orbital electron populations 1.21888 0.96143 1.01833 0.99362 1.20358 0.94447 0.93283 0.97620 1.21925 1.00526 0.97228 1.00019 1.22053 1.02225 1.01026 0.92885 1.22145 1.00629 0.97482 0.94366 1.19307 0.96845 0.91763 0.91796 0.93641 1.20731 0.93239 1.30490 1.08606 0.91078 1.24854 0.97667 0.95032 0.94844 1.69945 1.13391 1.44782 1.25190 0.87509 0.78749 0.79489 0.83919 1.21517 1.23893 1.17426 1.22286 0.98461 0.94678 0.96192 1.22184 1.00436 0.97459 0.93526 1.22575 0.99831 0.96186 0.98259 1.22326 0.99198 0.95710 0.98629 1.22315 0.97906 0.98767 0.97152 0.94303 0.94294 0.91623 0.93466 0.93734 0.93950 0.88522 0.96998 0.93198 0.95041 0.92486 0.93018 0.93030 0.91398 0.92322 0.92584 0.92519 0.93021 0.92096 0.93483 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 7.94 37.15 0.29 -2.05 16 2 C -0.06 -1.10 0.80 -154.51 -0.12 -1.23 16 3 C -0.14 -2.36 8.45 37.16 0.31 -2.05 16 4 C -0.13 -2.72 7.12 37.16 0.26 -2.46 16 5 C -0.11 -2.27 3.18 -26.73 -0.09 -2.35 16 6 C 0.02 0.48 1.07 -91.77 -0.10 0.38 16 7 H 0.05 0.96 5.89 -51.93 -0.31 0.66 16 8 C -0.49 -12.58 5.31 -34.44 -0.18 -12.76 16 9 H 0.07 2.00 7.47 -52.49 -0.39 1.61 16 10 C 0.08 2.09 4.47 -17.82 -0.08 2.01 16 11 N -0.90 -26.09 13.96 55.43 0.77 -25.32 16 12 Si 0.87 21.58 22.80 -169.99 -3.88 17.70 16 13 H -0.29 -7.17 7.10 56.52 0.40 -6.76 16 14 H -0.31 -7.97 7.11 56.52 0.40 -7.57 16 15 H -0.25 -5.77 4.64 56.52 0.26 -5.51 16 16 C -0.10 -2.04 1.68 -89.50 -0.15 -2.19 16 17 C -0.10 -1.92 5.76 -25.07 -0.14 -2.07 16 18 C -0.13 -2.11 6.91 -24.74 -0.17 -2.28 16 19 C -0.12 -1.85 6.83 -25.07 -0.17 -2.02 16 20 C -0.12 -2.18 5.82 -25.61 -0.15 -2.33 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 1.21 6.17 -51.93 -0.32 0.89 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.10 2.33 5.16 -51.92 -0.27 2.06 16 28 H 0.01 0.22 8.10 -51.93 -0.42 -0.20 16 29 H 0.05 1.20 7.38 -51.93 -0.38 0.81 16 30 H 0.03 0.61 6.29 -51.93 -0.33 0.28 16 31 H 0.06 1.31 4.29 -51.93 -0.22 1.08 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.05 1.18 2.17 -51.93 -0.11 1.07 16 34 H 0.07 1.32 7.84 -51.93 -0.41 0.91 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 1.11 6.37 -51.93 -0.33 0.78 16 LS Contribution 285.93 15.07 4.31 4.31 Total: -1.00 -26.87 285.93 -6.69 -33.56 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -7.41 Total: 1.14 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: -0.48 Total: -31.39 kcal Atomic # 7 Polarization: -26.09 SS G_CDS: 0.77 Total: -25.32 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -3.88 Total: 17.70 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -26.87 -6.69 -33.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261148593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.030 kcal (2) G-P(sol) polarization free energy of solvation -26.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds