Wall clock time and date at job start Mon Mar 30 2020 03:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47269 * 2 1 4 4 C 1.52998 * 109.47488 * 239.99929 * 2 1 3 5 5 C 1.53005 * 109.46796 * 119.99671 * 2 1 3 6 6 C 1.53001 * 109.46801 * 53.88429 * 5 2 1 7 7 H 1.09000 * 109.47049 * 307.31916 * 6 5 2 8 8 C 1.50701 * 109.47362 * 67.31884 * 6 5 2 9 9 H 1.07992 * 120.00114 * 242.49203 * 8 6 5 10 10 C 1.37884 * 119.99868 * 62.49249 * 8 6 5 11 11 N 1.31509 * 119.99837 * 193.51188 * 10 8 6 12 12 Si 1.86799 * 119.99815 * 13.50850 * 10 8 6 13 13 H 1.48510 * 109.47020 * 84.81092 * 12 10 8 14 14 H 1.48499 * 109.47054 * 204.80367 * 12 10 8 15 15 H 1.48498 * 109.47560 * 324.80836 * 12 10 8 16 16 C 1.53006 * 109.46880 * 187.31752 * 6 5 2 17 17 C 1.54264 * 110.03150 * 177.16290 * 16 6 5 18 18 C 1.54889 * 104.19751 * 217.10595 * 17 16 6 19 19 C 1.54891 * 102.74589 * 37.94456 * 18 17 16 20 20 C 1.53878 * 110.02893 * 60.00100 * 16 6 5 21 21 H 1.08998 * 109.47288 * 300.00283 * 1 2 3 22 22 H 1.08999 * 109.46916 * 60.00179 * 1 2 3 23 23 H 1.08996 * 109.47207 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47004 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47006 * 299.99766 * 3 2 1 26 26 H 1.09003 * 109.47292 * 60.00117 * 3 2 1 27 27 H 1.09010 * 109.46626 * 311.45230 * 4 2 1 28 28 H 1.08997 * 109.47124 * 71.44498 * 4 2 1 29 29 H 1.08999 * 109.47288 * 191.45450 * 4 2 1 30 30 H 1.09001 * 109.47545 * 293.88348 * 5 2 1 31 31 H 1.09002 * 109.46879 * 173.88151 * 5 2 1 32 32 H 0.97000 * 120.00300 * 180.02562 * 11 10 8 33 33 H 1.08998 * 110.01695 * 298.60945 * 16 6 5 34 34 H 1.09005 * 110.49070 * 335.78838 * 17 16 6 35 35 H 1.09006 * 110.48514 * 98.42886 * 17 16 6 36 36 H 1.08997 * 110.75761 * 279.63209 * 18 17 16 37 37 H 1.08997 * 110.91300 * 156.33087 * 18 17 16 38 38 H 1.08997 * 110.48351 * 203.37252 * 19 18 17 39 39 H 1.08996 * 110.59536 * 80.79337 * 19 18 17 40 40 H 1.09002 * 110.02954 * 238.56649 * 20 16 6 41 41 H 1.08995 * 110.03590 * 0.02562 * 20 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7212 1.2493 6 6 1.4082 -2.1125 1.3285 7 1 0.3245 -2.0244 1.2506 8 6 1.9256 -2.9642 0.1981 9 1 1.2435 -3.3429 -0.5486 10 6 3.2699 -3.2601 0.1173 11 7 3.7659 -3.7682 -0.9896 12 14 4.3864 -2.9392 1.5801 13 1 4.3291 -4.0958 2.5098 14 1 5.7816 -2.7536 1.1065 15 1 3.9363 -1.7132 2.2869 16 6 1.7723 -2.7626 2.6649 17 6 1.0836 -4.1374 2.7888 18 6 0.6946 -4.2340 4.2849 19 6 0.2616 -2.7850 4.6197 20 6 1.2496 -1.9027 3.8290 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.5197 -1.6730 -1.3571 28 1 1.8529 -0.1033 -2.1274 29 1 3.1107 -0.9014 -1.1530 30 1 1.7687 -0.1481 2.1360 31 1 3.1244 -0.8171 1.1963 32 1 4.7115 -3.9767 -1.0464 33 1 2.8535 -2.8774 2.7416 34 1 0.1941 -4.1766 2.1600 35 1 1.7758 -4.9362 2.5222 36 1 1.5524 -4.5301 4.8887 37 1 -0.1341 -4.9275 4.4274 38 1 0.3538 -2.5969 5.6893 39 1 -0.7608 -2.6041 4.2883 40 1 2.0771 -1.6010 4.4712 41 1 0.7362 -1.0226 3.4420 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261148593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:19 Heat of formation + Delta-G solvation = -30.702667 kcal Electronic energy + Delta-G solvation = -17255.757611 eV Core-core repulsion = 14941.427521 eV Total energy + Delta-G solvation = -2314.330090 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 224.184 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.28241 -37.94717 -34.74009 -32.66017 -29.59745 -28.35347 -27.99284 -27.58017 -26.47492 -22.86909 -21.54929 -20.87977 -19.38032 -17.98491 -17.29258 -16.08263 -15.87596 -15.47018 -14.99607 -14.93299 -14.60673 -14.13139 -13.86653 -13.59685 -13.05190 -12.80904 -12.79771 -12.67889 -12.42074 -12.15645 -12.03797 -11.82412 -11.71504 -11.57567 -11.50881 -11.33247 -11.29781 -11.14096 -10.83605 -10.66447 -10.18270 -10.06113 -8.16924 -6.01888 1.31590 1.37285 1.43683 2.41047 3.21252 3.88284 3.91331 4.00676 4.22663 4.24581 4.28690 4.57695 4.69254 4.76814 4.83714 4.84960 4.91906 4.93309 4.95192 5.03913 5.07071 5.10721 5.14365 5.19172 5.22954 5.26699 5.28793 5.36541 5.39905 5.53441 5.56046 5.57954 5.63526 5.66439 5.83569 5.86242 5.99563 6.12568 6.48253 6.90372 7.53617 9.00022 Molecular weight = 224.18amu Principal moments of inertia in cm(-1) A = 0.021257 B = 0.014501 C = 0.010630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.914535 B = 1930.474286 C = 2633.371850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.061 4.061 3 C -0.135 4.135 4 C -0.116 4.116 5 C -0.107 4.107 6 C 0.024 3.976 7 H 0.055 0.945 8 C -0.467 4.467 9 H 0.032 0.968 10 C 0.033 3.967 11 N -0.943 5.943 12 Si 0.913 3.087 13 H -0.292 1.292 14 H -0.327 1.327 15 H -0.218 1.218 16 C -0.107 4.107 17 C -0.104 4.104 18 C -0.125 4.125 19 C -0.113 4.113 20 C -0.121 4.121 21 H 0.062 0.938 22 H 0.052 0.948 23 H 0.047 0.953 24 H 0.038 0.962 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.028 0.972 29 H 0.017 0.983 30 H 0.058 0.942 31 H 0.033 0.967 32 H 0.254 0.746 33 H 0.031 0.969 34 H 0.061 0.939 35 H 0.030 0.970 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.706 7.062 9.433 13.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.061 4.061 3 C -0.192 4.192 4 C -0.173 4.173 5 C -0.145 4.145 6 C 0.005 3.995 7 H 0.073 0.927 8 C -0.505 4.505 9 H 0.050 0.950 10 C -0.164 4.164 11 N -0.584 5.584 12 Si 0.746 3.254 13 H -0.221 1.221 14 H -0.258 1.258 15 H -0.142 1.142 16 C -0.125 4.125 17 C -0.142 4.142 18 C -0.162 4.162 19 C -0.151 4.151 20 C -0.159 4.159 21 H 0.081 0.919 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.047 0.953 29 H 0.036 0.964 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.573 7.019 9.350 13.413 hybrid contribution 1.412 -0.597 -0.058 1.534 sum -5.161 6.422 9.293 12.419 Atomic orbital electron populations 1.21808 0.94241 1.01293 1.01305 1.20395 0.95999 0.94482 0.95182 1.21861 1.00078 0.95373 1.01923 1.21877 0.99659 1.00216 0.95519 1.22083 0.98973 0.97081 0.96342 1.19285 0.97290 0.91855 0.91050 0.92712 1.20865 0.92163 1.29173 1.08335 0.94954 1.25344 0.99034 0.95631 0.96368 1.70076 1.13275 1.47812 1.27265 0.86827 0.76354 0.80444 0.81759 1.22085 1.25799 1.14217 1.22278 0.97325 0.95992 0.96907 1.22180 0.99418 0.96070 0.96513 1.22547 1.00740 0.97850 0.95079 1.22310 0.99038 0.93850 0.99875 1.22281 0.98818 0.98781 0.95998 0.91892 0.92846 0.93404 0.94259 0.92241 0.91680 0.91757 0.95308 0.96409 0.92375 0.94837 0.93647 0.95154 0.91978 0.95149 0.92362 0.90420 0.90411 0.90848 0.92771 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 7.94 71.98 0.57 -3.53 16 2 C -0.06 -2.21 0.80 -52.18 -0.04 -2.25 16 3 C -0.14 -4.11 8.45 71.98 0.61 -3.50 16 4 C -0.12 -5.08 7.12 71.98 0.51 -4.56 16 5 C -0.11 -4.25 3.18 30.60 0.10 -4.15 16 6 C 0.02 1.03 1.07 -11.54 -0.01 1.02 16 7 H 0.05 2.24 5.89 -2.39 -0.01 2.22 16 8 C -0.47 -24.63 5.31 25.60 0.14 -24.49 16 9 H 0.03 1.92 7.47 -2.91 -0.02 1.90 16 10 C 0.03 1.83 4.47 84.66 0.38 2.21 16 11 N -0.94 -58.01 13.96 21.45 0.30 -57.71 16 12 Si 0.91 45.55 22.80 68.60 1.56 47.11 16 13 H -0.29 -14.64 7.10 99.48 0.71 -13.93 16 14 H -0.33 -17.12 7.11 99.48 0.71 -16.41 16 15 H -0.22 -9.75 4.64 99.48 0.46 -9.28 16 16 C -0.11 -4.26 1.68 -10.07 -0.02 -4.27 16 17 C -0.10 -3.97 5.76 31.67 0.18 -3.79 16 18 C -0.12 -3.62 6.91 31.89 0.22 -3.40 16 19 C -0.11 -2.92 6.83 31.67 0.22 -2.70 16 20 C -0.12 -3.78 5.82 31.32 0.18 -3.59 16 21 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 22 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.05 1.67 6.17 -2.39 -0.01 1.66 16 24 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.06 3.21 5.16 -2.38 -0.01 3.20 16 28 H 0.03 1.12 8.10 -2.39 -0.02 1.10 16 29 H 0.02 0.85 7.38 -2.39 -0.02 0.83 16 30 H 0.06 2.01 6.29 -2.39 -0.02 1.99 16 31 H 0.03 1.48 4.29 -2.39 -0.01 1.47 16 32 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 33 H 0.03 1.36 2.17 -2.39 -0.01 1.35 16 34 H 0.06 2.39 7.84 -2.38 -0.02 2.37 16 35 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.07 2.18 6.37 -2.39 -0.02 2.16 16 Total: -1.00 -60.68 285.93 5.62 -55.05 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.73 Total: 12.58 kcal Atomic # 6 Polarization: -60.07 SS G_CDS: 3.03 Total: -57.04 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.30 Total: -57.71 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.56 Total: 47.11 kcal Total: -60.68 5.62 -55.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261148593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.351 kcal (2) G-P(sol) polarization free energy of solvation -60.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds