Wall clock time and date at job start Mon Mar 30 2020 02:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46275 * 2 1 4 4 C 1.50704 * 109.47049 * 119.99673 * 2 1 3 5 5 H 1.07999 * 119.99550 * 120.00562 * 4 2 1 6 6 C 1.37872 * 120.00084 * 299.99975 * 4 2 1 7 7 N 1.31519 * 120.00405 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99958 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46819 * 60.00455 * 8 6 4 10 10 H 1.48498 * 109.47505 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47443 * 300.00433 * 8 6 4 12 12 N 1.46893 * 109.47131 * 240.00124 * 2 1 3 13 13 C 1.48651 * 111.00231 * 63.18588 * 12 2 1 14 14 C 1.54635 * 104.63027 * 158.52816 * 13 12 2 15 15 C 1.53605 * 104.71945 * 336.31613 * 14 13 12 16 16 C 1.53625 * 111.07737 * 120.82885 * 15 14 13 17 17 C 1.55163 * 102.66403 * 99.99624 * 16 15 14 18 18 N 1.48623 * 103.36462 * 36.58109 * 17 16 15 19 19 C 1.48187 * 105.85448 * 321.37915 * 18 17 16 20 20 C 1.48798 * 110.99945 * 178.79753 * 12 2 1 21 21 H 1.09009 * 109.47073 * 185.54713 * 1 2 3 22 22 H 1.08999 * 109.47472 * 305.54086 * 1 2 3 23 23 H 1.08999 * 109.47445 * 65.54862 * 1 2 3 24 24 H 0.96994 * 120.00028 * 179.97438 * 7 6 4 25 25 H 1.08994 * 110.40520 * 277.31965 * 13 12 2 26 26 H 1.08998 * 110.40360 * 39.74686 * 13 12 2 27 27 H 1.09004 * 110.39141 * 95.10423 * 14 13 12 28 28 H 1.08998 * 110.39763 * 217.50115 * 14 13 12 29 29 H 1.09004 * 110.77179 * 218.28667 * 16 15 14 30 30 H 1.08992 * 110.77128 * 341.70322 * 16 15 14 31 31 H 1.09005 * 110.63958 * 278.11393 * 17 16 15 32 32 H 1.09001 * 110.77771 * 155.12061 * 17 16 15 33 33 H 1.00893 * 110.99893 * 200.84308 * 18 17 16 34 34 H 1.08998 * 110.01523 * 265.82771 * 19 18 17 35 35 H 1.09005 * 110.05185 * 144.45896 * 19 18 17 36 36 H 1.08997 * 110.45690 * 320.50112 * 20 12 2 37 37 H 1.08999 * 110.45298 * 82.93420 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8298 2.6035 8 14 2.3225 -1.1194 4.0080 9 1 3.8076 -1.1186 4.0077 10 1 1.8270 -0.4198 5.2205 11 1 1.8282 -2.5196 4.0083 12 7 2.0197 -0.6924 -1.1994 13 6 1.6070 0.0247 -2.4344 14 6 2.6050 -0.4524 -3.5150 15 6 3.8424 -0.9104 -2.7285 16 6 4.1559 -2.3889 -3.0038 17 6 5.3043 -2.3051 -4.0439 18 7 6.0871 -1.1235 -3.5970 19 6 5.0902 -0.1266 -3.1405 20 6 3.5068 -0.6871 -1.2484 21 1 -0.3634 -1.0229 0.0993 22 1 -0.3634 0.5973 0.8362 23 1 -0.3634 0.4254 -0.9355 24 1 0.7082 1.1609 3.4844 25 1 0.5887 -0.2487 -2.7103 26 1 1.6870 1.1025 -2.2926 27 1 2.1845 -1.2848 -4.0792 28 1 2.8626 0.3691 -4.1834 29 1 4.4929 -2.8883 -2.0954 30 1 3.2883 -2.8959 -3.4259 31 1 4.9047 -2.1450 -5.0454 32 1 5.9178 -3.2056 -4.0159 33 1 6.6478 -0.7552 -4.3506 34 1 4.8490 0.5588 -3.9529 35 1 5.4806 0.4288 -2.2876 36 1 3.8957 0.2734 -0.9104 37 1 3.9109 -1.4961 -0.6399 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306474813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:38 Heat of formation + Delta-G solvation = 7.045328 kcal Electronic energy + Delta-G solvation = -16259.239958 eV Core-core repulsion = 13843.006400 eV Total energy + Delta-G solvation = -2416.233558 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.67778 -36.51964 -33.47531 -31.19667 -29.30574 -28.69340 -27.94005 -25.08847 -23.30044 -21.72865 -21.46995 -19.43623 -18.58087 -16.33289 -16.08573 -15.10840 -14.90873 -14.64431 -14.11932 -13.49089 -13.02565 -12.58182 -12.40380 -12.07490 -12.05051 -11.61399 -11.33679 -11.31734 -11.07092 -10.83005 -10.67068 -10.58150 -10.20077 -10.11585 -10.02834 -9.93098 -9.66069 -8.84556 -8.45514 -8.40285 -7.27091 -5.98189 -4.02131 3.35038 3.38749 3.42265 4.34347 4.44033 4.69488 4.86531 5.00779 5.24757 5.32945 5.36676 5.44196 5.61817 5.65780 5.79111 5.94785 6.02901 6.08783 6.21261 6.31567 6.39869 6.44326 6.51477 6.59637 6.74114 6.86816 6.91351 7.07703 7.11266 7.35679 7.51677 7.63776 7.86594 8.15539 8.34048 8.58890 9.04045 9.62868 11.09210 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.034315 B = 0.007869 C = 0.006917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.779216 B = 3557.449348 C = 4046.745181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.202 3.798 3 H -0.001 1.001 4 C -0.502 4.502 5 H 0.061 0.939 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.505 5.505 13 C 0.032 3.968 14 C -0.111 4.111 15 C -0.079 4.079 16 C -0.102 4.102 17 C 0.036 3.964 18 N -0.673 5.673 19 C 0.052 3.948 20 C 0.068 3.932 21 H 0.034 0.966 22 H 0.080 0.920 23 H 0.006 0.994 24 H 0.260 0.740 25 H 0.070 0.930 26 H 0.032 0.968 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.331 0.669 34 H 0.039 0.961 35 H 0.080 0.920 36 H 0.037 0.963 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.525 -2.422 -12.333 13.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.096 3.904 3 H 0.017 0.983 4 C -0.541 4.541 5 H 0.079 0.921 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.229 5.229 13 C -0.097 4.097 14 C -0.149 4.149 15 C -0.080 4.080 16 C -0.139 4.139 17 C -0.094 4.094 18 N -0.301 5.301 19 C -0.078 4.078 20 C -0.060 4.060 21 H 0.054 0.946 22 H 0.099 0.901 23 H 0.025 0.975 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.050 0.950 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.095 0.905 33 H 0.145 0.855 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.056 0.944 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.403 -3.088 -11.473 13.052 hybrid contribution 0.161 0.844 0.031 0.859 sum 5.563 -2.244 -11.442 12.919 Atomic orbital electron populations 1.21768 0.97632 1.00337 0.98884 1.19422 0.92516 0.91986 0.86514 0.98343 1.21074 1.30999 1.12246 0.89758 0.92105 1.24928 0.95207 0.95066 0.99006 1.69896 1.36992 1.23082 1.23463 0.86592 0.79135 0.79769 0.82108 1.20299 1.21382 1.20238 1.65540 1.06413 1.48861 1.02112 1.23077 0.98472 0.96254 0.91864 1.22497 0.95150 1.00076 0.97202 1.21587 0.93798 0.95223 0.97369 1.22493 0.97039 0.95447 0.98971 1.23128 0.95158 0.94389 0.96679 1.63152 1.21497 1.06839 1.38659 1.22782 0.91363 0.93845 0.99772 1.22828 0.90426 1.00629 0.92144 0.94632 0.90096 0.97458 0.92987 0.91184 0.94957 0.91506 0.92385 0.90496 0.90942 0.94594 0.90530 0.85450 0.94289 0.90209 0.94428 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.93 37.16 0.33 -2.87 16 2 C 0.20 5.21 1.82 -68.87 -0.13 5.08 16 3 H 0.00 -0.03 7.98 -51.93 -0.41 -0.44 16 4 C -0.50 -14.02 8.11 -34.44 -0.28 -14.30 16 5 H 0.06 1.70 7.05 -52.49 -0.37 1.33 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -25.90 11.38 55.43 0.63 -25.27 16 8 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.50 -11.05 5.19 -223.59 -1.16 -12.22 16 13 C 0.03 0.59 5.49 -1.99 -0.01 0.58 16 14 C -0.11 -1.67 6.34 -25.56 -0.16 -1.83 16 15 C -0.08 -1.23 0.90 -153.66 -0.14 -1.37 16 16 C -0.10 -1.45 6.19 -25.26 -0.16 -1.61 16 17 C 0.04 0.43 7.56 -1.72 -0.01 0.41 16 18 N -0.67 -8.59 7.53 -110.22 -0.83 -9.42 16 19 C 0.05 0.72 6.88 -3.11 -0.02 0.70 16 20 C 0.07 1.36 4.79 -2.56 -0.01 1.35 16 21 H 0.03 0.88 8.14 -51.92 -0.42 0.46 16 22 H 0.08 2.19 6.24 -51.93 -0.32 1.87 16 23 H 0.01 0.15 6.77 -51.93 -0.35 -0.21 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.07 1.26 7.58 -51.93 -0.39 0.86 16 26 H 0.03 0.62 7.92 -51.93 -0.41 0.20 16 27 H 0.07 0.94 7.29 -51.93 -0.38 0.56 16 28 H 0.06 0.78 7.20 -51.93 -0.37 0.40 16 29 H 0.08 1.19 7.45 -51.93 -0.39 0.80 16 30 H 0.07 1.00 7.37 -51.93 -0.38 0.61 16 31 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.33 3.45 8.92 -39.30 -0.35 3.10 16 34 H 0.04 0.49 7.18 -51.93 -0.37 0.12 16 35 H 0.08 1.20 7.37 -51.93 -0.38 0.82 16 36 H 0.04 0.80 7.33 -51.93 -0.38 0.42 16 37 H 0.08 1.65 6.79 -51.93 -0.35 1.30 16 LS Contribution 280.45 15.07 4.23 4.23 Total: -1.00 -28.96 280.45 -8.87 -37.83 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.03 Total: 0.45 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -0.68 Total: -12.29 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -1.36 Total: -46.91 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.96 -8.87 -37.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306474813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.873 kcal (2) G-P(sol) polarization free energy of solvation -28.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds