Wall clock time and date at job start Mon Mar 30 2020 03:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46297 * 110.99937 * 2 1 4 4 C 1.53998 * 112.35023 * 179.21570 * 3 2 1 5 5 C 1.51445 * 106.73044 * 55.29692 * 4 3 2 6 6 H 1.09005 * 109.86822 * 56.77872 * 5 4 3 7 7 C 1.52204 * 117.91394 * 183.70115 * 5 4 3 8 8 N 1.48737 * 105.74267 * 145.96894 * 7 5 4 9 9 C 1.46904 * 110.99846 * 118.55203 * 8 7 5 10 10 C 1.50696 * 109.46794 * 169.99487 * 9 8 7 11 11 H 1.07999 * 120.00319 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99717 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99913 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 C 1.49151 * 108.27469 * 356.48150 * 8 7 5 19 19 C 1.52932 * 103.30678 * 335.58428 * 18 8 7 20 20 H 1.08999 * 111.21000 * 284.56985 * 19 18 8 21 21 C 1.47761 * 110.99680 * 232.27247 * 2 1 3 22 22 H 1.08997 * 109.47680 * 187.73288 * 1 2 3 23 23 H 1.09000 * 109.47252 * 307.73144 * 1 2 3 24 24 H 1.09003 * 109.47359 * 67.72933 * 1 2 3 25 25 H 1.09011 * 108.97813 * 299.60459 * 3 2 1 26 26 H 1.09000 * 108.98003 * 58.31489 * 3 2 1 27 27 H 1.08998 * 109.71915 * 296.15416 * 4 3 2 28 28 H 1.09002 * 110.29889 * 174.75815 * 4 3 2 29 29 H 1.08993 * 110.19400 * 26.90161 * 7 5 4 30 30 H 1.08997 * 110.19326 * 265.03793 * 7 5 4 31 31 H 1.09005 * 109.47078 * 49.99771 * 9 8 7 32 32 H 1.09002 * 109.47005 * 289.99987 * 9 8 7 33 33 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 34 34 H 1.08994 * 110.65284 * 94.03936 * 18 8 7 35 35 H 1.08997 * 110.65076 * 217.13083 * 18 8 7 36 36 H 1.08999 * 109.98088 * 65.56986 * 21 2 1 37 37 H 1.09000 * 110.05154 * 304.26763 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9932 1.3658 0.0000 4 6 3.5327 1.4022 0.0195 5 6 4.0031 0.5811 -1.1629 6 1 3.5740 0.9774 -2.0833 7 6 5.5012 0.3755 -1.3367 8 7 5.6573 -0.9865 -1.9135 9 6 6.2982 -0.9286 -3.2341 10 6 6.6621 -2.3222 -3.6774 11 1 6.4392 -3.1665 -3.0419 12 6 7.2787 -2.5195 -4.8948 13 7 7.5958 -3.7357 -5.2818 14 14 7.6636 -1.0592 -5.9942 15 1 6.5137 -0.8036 -6.8985 16 1 7.9097 0.1410 -5.1551 17 1 8.8735 -1.3541 -6.8033 18 6 4.3075 -1.6147 -2.0017 19 6 3.5048 -0.8760 -0.9298 20 1 3.7733 -1.2180 0.0697 21 6 1.9984 -0.8441 -1.0911 22 1 -0.3634 -1.0183 0.1383 23 1 -0.3634 0.6289 0.8128 24 1 -0.3634 0.3895 -0.9510 25 1 1.6448 1.8793 -0.8963 26 1 1.6148 1.8908 0.8771 27 1 3.8992 0.9632 0.9474 28 1 3.8879 2.4284 -0.0744 29 1 6.0036 0.4352 -0.3713 30 1 5.9067 1.1221 -2.0195 31 1 7.2001 -0.3194 -3.1739 32 1 5.6087 -0.4868 -3.9536 33 1 8.0292 -3.8745 -6.1384 34 1 3.8719 -1.4532 -2.9876 35 1 4.3633 -2.6793 -1.7746 36 1 1.7363 -0.4121 -2.0569 37 1 1.5941 -1.8533 -1.0127 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306604578.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:11 Heat of formation + Delta-G solvation = -9.640322 kcal Electronic energy + Delta-G solvation = -16026.064444 eV Core-core repulsion = 13609.107342 eV Total energy + Delta-G solvation = -2416.957102 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.17123 -38.05591 -35.13415 -33.69748 -32.51027 -30.07064 -28.48852 -27.03844 -24.85764 -22.94371 -22.53726 -21.48802 -20.84885 -18.98953 -16.85801 -16.45352 -16.17338 -15.98808 -15.75144 -15.71110 -14.93922 -14.66560 -14.34227 -14.05392 -13.69555 -13.43038 -13.09687 -13.04575 -12.85868 -12.66637 -12.49986 -12.06667 -11.88420 -11.76623 -11.66380 -11.55068 -11.29744 -10.93663 -10.80969 -9.22887 -9.06823 -8.30588 -6.34290 1.31226 1.33617 1.44667 2.32022 2.85156 3.02274 3.22549 3.43053 3.78489 3.82275 4.17107 4.29259 4.38144 4.44483 4.49870 4.53984 4.60195 4.63844 4.69860 4.74668 4.81165 4.88724 4.91389 4.96612 5.01398 5.03056 5.12201 5.20202 5.25271 5.46912 5.52892 5.96957 6.08806 6.20069 6.22283 6.60292 6.71728 7.29552 8.86404 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.046804 B = 0.006474 C = 0.006158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.101966 B = 4323.784397 C = 4545.516940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.566 5.566 3 C 0.065 3.935 4 C -0.094 4.094 5 C -0.111 4.111 6 H 0.057 0.943 7 C 0.047 3.953 8 N -0.539 5.539 9 C 0.169 3.831 10 C -0.518 4.518 11 H 0.035 0.965 12 C 0.008 3.992 13 N -0.947 5.947 14 Si 0.948 3.052 15 H -0.268 1.268 16 H -0.250 1.250 17 H -0.278 1.278 18 C 0.069 3.931 19 C -0.089 4.089 20 H 0.086 0.914 21 C 0.081 3.919 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.023 0.977 25 H 0.024 0.976 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.028 0.972 32 H -0.016 1.016 33 H 0.268 0.732 34 H 0.030 0.970 35 H 0.057 0.943 36 H 0.029 0.971 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.283 13.143 9.885 21.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.291 5.291 3 C -0.063 4.063 4 C -0.132 4.132 5 C -0.131 4.131 6 H 0.075 0.925 7 C -0.081 4.081 8 N -0.263 5.263 9 C 0.042 3.958 10 C -0.557 4.557 11 H 0.053 0.947 12 C -0.189 4.189 13 N -0.588 5.588 14 Si 0.771 3.229 15 H -0.193 1.193 16 H -0.174 1.174 17 H -0.203 1.203 18 C -0.059 4.059 19 C -0.109 4.109 20 H 0.104 0.896 21 C -0.047 4.047 22 H 0.091 0.909 23 H 0.100 0.900 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.111 0.889 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.002 0.998 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.047 0.953 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.719 12.556 10.477 20.717 hybrid contribution -0.225 0.641 -2.221 2.322 sum -12.944 13.197 8.256 20.246 Atomic orbital electron populations 1.22341 0.85603 1.03058 1.00719 1.61061 1.08594 1.13351 1.46079 1.22047 0.94983 0.88176 1.01102 1.21368 0.94535 1.00325 0.97008 1.22072 0.95187 0.96473 0.99337 0.92482 1.22593 0.95832 0.89380 1.00263 1.64235 1.19804 1.18153 1.24148 1.20115 0.93697 0.95610 0.86420 1.21256 1.38537 0.92918 1.02944 0.94693 1.25866 0.95047 0.98773 0.99232 1.70053 1.43352 1.22944 1.22455 0.85702 0.78352 0.79945 0.78871 1.19281 1.17404 1.20328 1.22447 0.88054 0.98565 0.96834 1.21938 0.94480 0.95286 0.99181 0.89552 1.21691 0.93345 0.97932 0.91725 0.90911 0.89950 0.95844 0.95734 0.88888 0.90714 0.89359 0.89955 0.93030 0.95395 0.99794 0.92352 0.95182 0.92469 0.95292 0.89998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.63 127.69 1.23 1.74 16 2 N -0.57 -12.32 4.78 -922.58 -4.41 -16.73 16 3 C 0.06 1.24 5.41 86.75 0.47 1.71 16 4 C -0.09 -1.96 5.89 30.42 0.18 -1.78 16 5 C -0.11 -3.10 2.30 -10.62 -0.02 -3.12 16 6 H 0.06 1.67 7.97 -2.38 -0.02 1.65 16 7 C 0.05 1.57 6.58 85.68 0.56 2.13 16 8 N -0.54 -23.53 5.21 -891.25 -4.65 -28.18 16 9 C 0.17 8.47 3.45 85.55 0.30 8.77 16 10 C -0.52 -31.11 9.37 25.60 0.24 -30.87 16 11 H 0.03 2.34 8.02 -2.91 -0.02 2.32 16 12 C 0.01 0.48 5.47 84.66 0.46 0.95 16 13 N -0.95 -60.38 13.96 21.45 0.30 -60.08 16 14 Si 0.95 44.90 27.47 68.60 1.88 46.78 16 15 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 16 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 C 0.07 2.75 5.82 85.84 0.50 3.25 16 19 C -0.09 -2.71 2.62 -10.35 -0.03 -2.74 16 20 H 0.09 2.70 8.07 -2.39 -0.02 2.68 16 21 C 0.08 2.07 5.32 85.66 0.46 2.53 16 22 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.08 1.10 8.07 -2.39 -0.02 1.08 16 24 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 25 H 0.02 0.48 8.14 -2.38 -0.02 0.46 16 26 H 0.09 1.42 8.09 -2.39 -0.02 1.40 16 27 H 0.07 1.58 8.09 -2.39 -0.02 1.56 16 28 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 2.55 8.09 -2.39 -0.02 2.53 16 30 H 0.05 1.71 7.56 -2.39 -0.02 1.69 16 31 H 0.03 1.39 7.07 -2.38 -0.02 1.37 16 32 H -0.02 -0.77 7.29 -2.39 -0.02 -0.78 16 33 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 34 H 0.03 1.26 7.67 -2.39 -0.02 1.24 16 35 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.03 0.77 8.00 -2.39 -0.02 0.75 16 37 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -67.58 285.19 -1.58 -69.16 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 0.95 Total: 6.48 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: 4.34 Total: -17.43 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -8.76 Total: -104.99 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.78 kcal Total: -67.58 -1.58 -69.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306604578.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.516 kcal (2) G-P(sol) polarization free energy of solvation -67.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds